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  1. paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_scratch.csv +11 -0
  2. paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_realism.csv +75 -0
  3. paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_signal.csv +114 -0
  4. paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_slide_numbers.csv +242 -0
paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_scratch.csv ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,label,scored_arm,comp_l1,coverage,logfc_r,deg,minutes,steps,unmasked_comp_l1,unmasked_coverage,unmasked_logfc_r,source
2
+ cal,Calibration,xcalL_K1000,0.44428,0.460894,0.0964165,10,,0,0.443804,0.463821,0.0966877,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/xcalL_K1000/summary.json
3
+ r16,LoRA r16,locoL_lora16sat_s26750_K1000,0.490833,0.344797,0.106466,4,20.31,26750,0.491321,0.341382,0.10171,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_lora16sat_s26750_K1000/summary.json
4
+ r64,LoRA r64,locoL_lora64sat_s59000_K1000,0.568429,0.284065,0.226307,5,44.2267,59000,0.569603,0.289187,0.227913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_lora64sat_s59000_K1000/summary.json
5
+ full,Full FT,locoL_fullsat_s108500_K1000,0.584654,0.340407,0.0843829,3,93.34,108500,0.584617,0.345691,0.0729786,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_fullsat_s108500_K1000/summary.json
6
+ scratch,From scratch,locoL_scratchsat_s162000_K1000,0.499422,0.327724,0.228508,1,127.222,162000,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_scratchsat_s162000_K1000/summary.json
7
+ own,Own-cohort LoRA,within_real_lora__raw,0.361805,0.827805,0.525667,28,6.33567,,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/within_real_lora__raw/summary.json
8
+ scratch_milestone,locoL_scratchsat_s50000_K1000,locoL_scratchsat_s50000_K1000,0.491896,0.338537,0.246713,2,,,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_scratchsat_s50000_K1000/summary.json
9
+ scratch_milestone,locoL_scratchsat_s100000_K1000,locoL_scratchsat_s100000_K1000,0.496571,0.342602,0.244987,1,,,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_scratchsat_s100000_K1000/summary.json
10
+ scratch_milestone,locoL_scratchsat_s150000_K1000,locoL_scratchsat_s150000_K1000,0.509536,0.330244,0.24743,1,,,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_scratchsat_s150000_K1000/summary.json
11
+ scratch_milestone,locoL_scratchsat_s162000_K1000,locoL_scratchsat_s162000_K1000,0.499422,0.327724,0.228508,1,,,,,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_masked/ye2026_sepsis/locoL_scratchsat_s162000_K1000/summary.json
paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_realism.csv ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ panel,dataset,series,pairs,value,source,y_axis_break
2
+ comp_l1,immicro,zero_shot,0,0.4548664935416326,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
3
+ comp_l1,immicro,zs_len,0,0.4201346549583402,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/summary.json,True
4
+ comp_l1,immicro,zs_cal_budget,5,0.19164257165311652,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n5,True
5
+ comp_l1,immicro,zs_cal_budget,10,0.1996025683151641,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n10,True
6
+ comp_l1,immicro,zs_cal_budget,20,0.19112138214206625,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n20,True
7
+ comp_l1,immicro,zs_cal_budget,40,0.19600612924651933,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n40,True
8
+ comp_l1,immicro,zs_cal_budget,all,0.19850275515696958,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),True
9
+ comp_l1,immicro,scsemi,5,0.21844931529389827,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n5__raw,True
10
+ comp_l1,immicro,scsemi,10,0.22693199886759646,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n10__raw,True
11
+ comp_l1,immicro,scsemi,20,0.22324856671652038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n20__raw,True
12
+ comp_l1,immicro,scsemi,40,0.221315298938025,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n40__raw,True
13
+ comp_l1,immicro,scsemi,all,0.2170087237986556,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled arm scsemi__raw,True
14
+ comp_l1,immicro,lora,5,0.17145118443734877,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
15
+ comp_l1,immicro,lora,10,0.18788133961403,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
16
+ comp_l1,immicro,lora,20,0.17232428387355106,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
17
+ comp_l1,immicro,lora,40,0.17138488720357878,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
18
+ comp_l1,immicro,lora,all,0.16172890350786212,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
19
+ comp_l1,immicro,ref_pseudo,,0.20433690901119841,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
20
+ comp_l1,immicro,ref_null,,0.1606372707722086,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,True
21
+ coverage,immicro,zero_shot,0,0.1918380062305296,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
22
+ coverage,immicro,zs_len,0,0.5048598130841121,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/summary.json,False
23
+ coverage,immicro,zs_cal_budget,5,0.5270404984423676,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n5,False
24
+ coverage,immicro,zs_cal_budget,10,0.5287227414330218,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n10,False
25
+ coverage,immicro,zs_cal_budget,20,0.5287227414330218,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n20,False
26
+ coverage,immicro,zs_cal_budget,40,0.5223676012461059,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n40,False
27
+ coverage,immicro,zs_cal_budget,all,0.527227414330218,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
28
+ coverage,immicro,scsemi,5,0.038193146417445485,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n5__raw,False
29
+ coverage,immicro,scsemi,10,0.038006230529595016,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n10__raw,False
30
+ coverage,immicro,scsemi,20,0.03719626168224299,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n20__raw,False
31
+ coverage,immicro,scsemi,40,0.03844236760124611,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n40__raw,False
32
+ coverage,immicro,scsemi,all,0.03844236760124611,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled arm scsemi__raw,False
33
+ coverage,immicro,lora,5,0.839190031152648,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
34
+ coverage,immicro,lora,10,0.7856697819314642,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
35
+ coverage,immicro,lora,20,0.755202492211838,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
36
+ coverage,immicro,lora,40,0.7784423676012461,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
37
+ coverage,immicro,lora,all,0.7842990654205607,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
38
+ coverage,immicro,ref_pseudo,,0.5244236760124611,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,False
39
+ meta,immicro,n_scored_donors,,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,
40
+ meta,immicro,n_pairs_all,all,78–79,RUN.json train_rows: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/RUN.json,
41
+ meta,immicro,n_inner_val,,7,"RUN.json inner_val_rows (all LoRA arms, 5 folds)",
42
+ meta,immicro,n_test_donors_per_fold,,22/22/21/21/21,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/PREPARE.json fold_sizes test,
43
+ meta,immicro,n_alpha_fit_pairs,0,85–86,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/PREPARE.json fold_sizes train+inner_val; prepare_dataset.py fit = fold != f,
44
+ comp_l1,ye2026_sepsis,zero_shot,0,0.5108261993151957,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
45
+ comp_l1,ye2026_sepsis,zs_len,0,0.5569249480786996,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,False
46
+ comp_l1,ye2026_sepsis,zs_cal_budget,5,0.4119864488366454,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
47
+ comp_l1,ye2026_sepsis,zs_cal_budget,10,0.4139614715438767,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
48
+ comp_l1,ye2026_sepsis,zs_cal_budget,20,0.40747903968889737,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
49
+ comp_l1,ye2026_sepsis,zs_cal_budget,40,0.4041847565927502,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
50
+ comp_l1,ye2026_sepsis,zs_cal_budget,all,0.40065324062398555,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
51
+ comp_l1,ye2026_sepsis,lora,5,0.4280613786711354,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
52
+ comp_l1,ye2026_sepsis,lora,10,0.38966522903618334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
53
+ comp_l1,ye2026_sepsis,lora,20,0.3802570478327888,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
54
+ comp_l1,ye2026_sepsis,lora,40,0.3647568921706022,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
55
+ comp_l1,ye2026_sepsis,lora,all,0.3618246783833512,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
56
+ comp_l1,ye2026_sepsis,ref_pseudo,,0.233165273351523,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
57
+ comp_l1,ye2026_sepsis,ref_null,,0.515468004498372,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
58
+ coverage,ye2026_sepsis,zero_shot,0,0.06731707317073171,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
59
+ coverage,ye2026_sepsis,zs_len,0,0.39926829268292685,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,False
60
+ coverage,ye2026_sepsis,zs_cal_budget,5,0.4353658536585366,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
61
+ coverage,ye2026_sepsis,zs_cal_budget,10,0.44146341463414634,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
62
+ coverage,ye2026_sepsis,zs_cal_budget,20,0.42520325203252035,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
63
+ coverage,ye2026_sepsis,zs_cal_budget,40,0.432520325203252,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
64
+ coverage,ye2026_sepsis,zs_cal_budget,all,0.4308130081300813,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
65
+ coverage,ye2026_sepsis,lora,5,0.7666666666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
66
+ coverage,ye2026_sepsis,lora,10,0.7858536585365854,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
67
+ coverage,ye2026_sepsis,lora,20,0.8066666666666666,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
68
+ coverage,ye2026_sepsis,lora,40,0.817560975609756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
69
+ coverage,ye2026_sepsis,lora,all,0.829349593495935,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
70
+ coverage,ye2026_sepsis,ref_pseudo,,0.48,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,False
71
+ meta,ye2026_sepsis,n_scored_donors,,82,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,
72
+ meta,ye2026_sepsis,n_pairs_all,all,58–59,RUN.json train_rows: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/real_lora/RUN.json,
73
+ meta,ye2026_sepsis,n_inner_val,,7–8,"RUN.json inner_val_rows (all LoRA arms, 5 folds)",
74
+ meta,ye2026_sepsis,n_test_donors_per_fold,,17/17/16/16/16,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/PREPARE.json fold_sizes test,
75
+ meta,ye2026_sepsis,n_alpha_fit_pairs,0,65–66,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/PREPARE.json fold_sizes train+inner_val; prepare_dataset.py fit = fold != f,
paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_signal.csv ADDED
@@ -0,0 +1,114 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ panel,dataset,series,pairs,value,source,y_axis_break
2
+ nk_fraction_r,immicro,zero_shot,0,0.49394160824576405,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
3
+ nk_fraction_r,immicro,zs_len,0,0.48976906486571425,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/per_donor.csv,False
4
+ nk_fraction_r,immicro,zs_cal_budget,5,0.5019382482162618,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n5,False
5
+ nk_fraction_r,immicro,zs_cal_budget,10,0.5149641511550681,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n10,False
6
+ nk_fraction_r,immicro,zs_cal_budget,20,0.5251026675518605,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n20,False
7
+ nk_fraction_r,immicro,zs_cal_budget,40,0.4999646152855758,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n40,False
8
+ nk_fraction_r,immicro,zs_cal_budget,all,0.5003961466692975,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
9
+ nk_fraction_r,immicro,scsemi,5,0.26505801664469764,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n5__raw,False
10
+ nk_fraction_r,immicro,scsemi,10,0.32997008942342126,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n10__raw,False
11
+ nk_fraction_r,immicro,scsemi,20,0.4761866180371444,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n20__raw,False
12
+ nk_fraction_r,immicro,scsemi,40,0.4937087576279337,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n40__raw,False
13
+ nk_fraction_r,immicro,scsemi,all,0.42450333083084973,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled arm scsemi__raw,False
14
+ nk_fraction_r,immicro,lora,5,0.19927421883785934,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
15
+ nk_fraction_r,immicro,lora,10,0.39716857270640143,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
16
+ nk_fraction_r,immicro,lora,20,0.5643593920183632,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
17
+ nk_fraction_r,immicro,lora,40,0.6993357449065651,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
18
+ nk_fraction_r,immicro,lora,all,0.7019256538365702,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
19
+ nk_fraction_r,immicro,ref_pseudo,,0.6035440889137252,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
20
+ other_fraction_r,immicro,T cell,0,0.6043108678294739,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
21
+ other_fraction_r,immicro,T cell,0+cal,0.6726477127429659,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
22
+ other_fraction_r,immicro,T cell,5,0.6315475665249287,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
23
+ other_fraction_r,immicro,T cell,10,0.5957704370194421,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
24
+ other_fraction_r,immicro,T cell,20,0.6410965355365116,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
25
+ other_fraction_r,immicro,T cell,40,0.6991147198279736,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
26
+ other_fraction_r,immicro,T cell,all,0.7406200271862474,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
27
+ other_fraction_r,immicro,B cell,0,0.5279396755398866,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
28
+ other_fraction_r,immicro,B cell,0+cal,0.7220915715108555,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
29
+ other_fraction_r,immicro,B cell,5,0.729131301837333,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
30
+ other_fraction_r,immicro,B cell,10,0.7212947581946606,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
31
+ other_fraction_r,immicro,B cell,20,0.7429431917092265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
32
+ other_fraction_r,immicro,B cell,40,0.7669770248551714,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
33
+ other_fraction_r,immicro,B cell,all,0.7522272982606778,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
34
+ other_fraction_r,immicro,Monocyte,0,0.8368172275114304,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
35
+ other_fraction_r,immicro,Monocyte,0+cal,0.8459417571453376,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
36
+ other_fraction_r,immicro,Monocyte,5,0.8134328996487339,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
37
+ other_fraction_r,immicro,Monocyte,10,0.7612668103183707,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
38
+ other_fraction_r,immicro,Monocyte,20,0.7864676702206632,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
39
+ other_fraction_r,immicro,Monocyte,40,0.8072462606251652,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
40
+ other_fraction_r,immicro,Monocyte,all,0.8641118040407296,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
41
+ logfc_r,ye2026_sepsis,zero_shot,0,-0.011802666469938328,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
42
+ logfc_r,ye2026_sepsis,zs_len,0,0.10712583647600069,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/contrast.csv,False
43
+ logfc_r,ye2026_sepsis,zs_cal_budget,5,0.07938905362315378,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
44
+ logfc_r,ye2026_sepsis,zs_cal_budget,10,0.09542918105844352,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
45
+ logfc_r,ye2026_sepsis,zs_cal_budget,20,0.10253144906014951,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
46
+ logfc_r,ye2026_sepsis,zs_cal_budget,40,0.11880840796993535,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
47
+ logfc_r,ye2026_sepsis,zs_cal_budget,all,0.12267970089558217,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
48
+ logfc_r,ye2026_sepsis,lora,5,0.29404452074006043,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
49
+ logfc_r,ye2026_sepsis,lora,10,0.4222959020688887,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
50
+ logfc_r,ye2026_sepsis,lora,20,0.3671933060907342,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
51
+ logfc_r,ye2026_sepsis,lora,40,0.47588059575028696,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
52
+ logfc_r,ye2026_sepsis,lora,all,0.5267612711229187,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
53
+ logfc_r,ye2026_sepsis,ref_pseudo,,0.4675925305606039,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
54
+ logfc_r,ye2026_sepsis,ref_broadcast,,0.31594581626202856,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
55
+ top50_deg,ye2026_sepsis,zero_shot,0,9.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
56
+ top50_deg,ye2026_sepsis,zs_len,0,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/contrast.csv,False
57
+ top50_deg,ye2026_sepsis,zs_cal_budget,5,12.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
58
+ top50_deg,ye2026_sepsis,zs_cal_budget,10,10.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
59
+ top50_deg,ye2026_sepsis,zs_cal_budget,20,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
60
+ top50_deg,ye2026_sepsis,zs_cal_budget,40,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
61
+ top50_deg,ye2026_sepsis,zs_cal_budget,all,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
62
+ top50_deg,ye2026_sepsis,lora,5,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
63
+ top50_deg,ye2026_sepsis,lora,10,8.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
64
+ top50_deg,ye2026_sepsis,lora,20,18.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
65
+ top50_deg,ye2026_sepsis,lora,40,22.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
66
+ top50_deg,ye2026_sepsis,lora,all,23.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
67
+ top50_deg,ye2026_sepsis,ref_pseudo,,22.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
68
+ top50_deg,ye2026_sepsis,ref_broadcast,,21.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
69
+ top50_deg_by_type,ye2026_sepsis,T cell,0,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
70
+ top50_deg_by_type,ye2026_sepsis,T cell,0+cal,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
71
+ top50_deg_by_type,ye2026_sepsis,T cell,5,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
72
+ top50_deg_by_type,ye2026_sepsis,T cell,10,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
73
+ top50_deg_by_type,ye2026_sepsis,T cell,20,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
74
+ top50_deg_by_type,ye2026_sepsis,T cell,40,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
75
+ top50_deg_by_type,ye2026_sepsis,T cell,all,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
76
+ top50_deg_by_type,ye2026_sepsis,T cell,pseudo,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
77
+ top50_deg_by_type,ye2026_sepsis,T cell,broadcast,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
78
+ top50_deg_by_type,ye2026_sepsis,B cell,0,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
79
+ top50_deg_by_type,ye2026_sepsis,B cell,0+cal,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
80
+ top50_deg_by_type,ye2026_sepsis,B cell,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
81
+ top50_deg_by_type,ye2026_sepsis,B cell,10,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
82
+ top50_deg_by_type,ye2026_sepsis,B cell,20,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
83
+ top50_deg_by_type,ye2026_sepsis,B cell,40,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
84
+ top50_deg_by_type,ye2026_sepsis,B cell,all,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
85
+ top50_deg_by_type,ye2026_sepsis,B cell,pseudo,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
86
+ top50_deg_by_type,ye2026_sepsis,B cell,broadcast,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
87
+ top50_deg_by_type,ye2026_sepsis,Monocyte,0,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
88
+ top50_deg_by_type,ye2026_sepsis,Monocyte,0+cal,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
89
+ top50_deg_by_type,ye2026_sepsis,Monocyte,5,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
90
+ top50_deg_by_type,ye2026_sepsis,Monocyte,10,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
91
+ top50_deg_by_type,ye2026_sepsis,Monocyte,20,13.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
92
+ top50_deg_by_type,ye2026_sepsis,Monocyte,40,12.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
93
+ top50_deg_by_type,ye2026_sepsis,Monocyte,all,19.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
94
+ top50_deg_by_type,ye2026_sepsis,Monocyte,pseudo,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
95
+ top50_deg_by_type,ye2026_sepsis,Monocyte,broadcast,13.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
96
+ top50_deg_by_type,ye2026_sepsis,NK cell,0,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
97
+ top50_deg_by_type,ye2026_sepsis,NK cell,0+cal,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
98
+ top50_deg_by_type,ye2026_sepsis,NK cell,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
99
+ top50_deg_by_type,ye2026_sepsis,NK cell,10,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
100
+ top50_deg_by_type,ye2026_sepsis,NK cell,20,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
101
+ top50_deg_by_type,ye2026_sepsis,NK cell,40,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
102
+ top50_deg_by_type,ye2026_sepsis,NK cell,all,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
103
+ top50_deg_by_type,ye2026_sepsis,NK cell,pseudo,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
104
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105
+ top50_deg_by_type,ye2026_sepsis,DC,0,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
106
+ top50_deg_by_type,ye2026_sepsis,DC,0+cal,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
107
+ top50_deg_by_type,ye2026_sepsis,DC,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
108
+ top50_deg_by_type,ye2026_sepsis,DC,10,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
109
+ top50_deg_by_type,ye2026_sepsis,DC,20,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
110
+ top50_deg_by_type,ye2026_sepsis,DC,40,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
111
+ top50_deg_by_type,ye2026_sepsis,DC,all,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
112
+ top50_deg_by_type,ye2026_sepsis,DC,pseudo,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
113
+ top50_deg_by_type,ye2026_sepsis,DC,broadcast,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
114
+ meta,ye2026_sepsis,n_case_vs_control,,61 vs 21,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,
paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_slide_numbers.csv ADDED
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1
+ key,value,source
2
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3
+ immicro.coverage.zs_cal,0.527,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
4
+ immicro.coverage.zs_len,0.505,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/summary.json
5
+ immicro.coverage.lora_n5,0.839,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
6
+ immicro.coverage.lora_all,0.784,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
7
+ immicro.coverage.zs_pseudo,0.524,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
8
+ immicro.comp_l1.zero_shot,0.455,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
9
+ immicro.comp_l1.zs_cal,0.199,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
10
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11
+ immicro.comp_l1.lora_n5,0.171,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
12
+ immicro.comp_l1.lora_all,0.162,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
13
+ immicro.comp_l1.zs_pseudo,0.204,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
14
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15
+ immicro.comp_l1.lora_5_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
16
+ immicro.comp_l1.lora_5_minus_zero_shot.frac_donors_lower,0.94,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
17
+ immicro.comp_l1.lora_5_vs_zero_shot.wilcoxon_p,7.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
18
+ immicro.comp_l1.lora_10_minus_zero_shot.mean,-0.267,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
19
+ immicro.comp_l1.lora_10_minus_zero_shot.frac_donors_lower,0.92,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
20
+ immicro.comp_l1.lora_10_vs_zero_shot.wilcoxon_p,5.8e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
21
+ immicro.comp_l1.lora_20_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
22
+ immicro.comp_l1.lora_20_minus_zero_shot.frac_donors_lower,0.94,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
23
+ immicro.comp_l1.lora_20_vs_zero_shot.wilcoxon_p,4.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
24
+ immicro.comp_l1.lora_40_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
25
+ immicro.comp_l1.lora_40_minus_zero_shot.frac_donors_lower,0.95,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
26
+ immicro.comp_l1.lora_40_vs_zero_shot.wilcoxon_p,1.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
27
+ immicro.comp_l1.lora_all_minus_zero_shot.mean,-0.293,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
28
+ immicro.comp_l1.lora_all_minus_zero_shot.frac_donors_lower,0.96,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
29
+ immicro.comp_l1.lora_all_vs_zero_shot.wilcoxon_p,1.7e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
30
+ immicro.comp_l1.lora_5_minus_zs_cal.mean,-0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
31
+ immicro.comp_l1.lora_5_minus_zs_cal.frac_donors_lower,0.66,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
32
+ immicro.comp_l1.lora_5_vs_zs_cal.wilcoxon_p,2.3e-05,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
33
+ immicro.comp_l1.lora_10_minus_zs_cal.mean,-0.011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
34
+ immicro.comp_l1.lora_10_minus_zs_cal.frac_donors_lower,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
35
+ immicro.comp_l1.lora_10_vs_zs_cal.wilcoxon_p,0.057,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
36
+ immicro.comp_l1.lora_20_minus_zs_cal.mean,-0.026,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
37
+ immicro.comp_l1.lora_20_minus_zs_cal.frac_donors_lower,0.67,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
38
+ immicro.comp_l1.lora_20_vs_zs_cal.wilcoxon_p,4e-05,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
39
+ immicro.comp_l1.lora_40_minus_zs_cal.mean,-0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
40
+ immicro.comp_l1.lora_40_minus_zs_cal.frac_donors_lower,0.68,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
41
+ immicro.comp_l1.lora_40_vs_zs_cal.wilcoxon_p,0.00011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
42
+ immicro.comp_l1.lora_all_minus_zs_cal.mean,-0.037,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
43
+ immicro.comp_l1.lora_all_minus_zs_cal.frac_donors_lower,0.69,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
44
+ immicro.comp_l1.lora_all_vs_zs_cal.wilcoxon_p,1.9e-07,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
45
+ immicro.comp_l1.zs_cal_minus_zero_shot.mean,-0.256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
46
+ immicro.comp_l1.zs_cal_vs_zero_shot.wilcoxon_p,9.5e-17,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
47
+ immicro.coverage.lora_5_minus_zs_cal.mean,0.312,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
48
+ immicro.coverage.lora_5_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
49
+ immicro.coverage.lora_5_vs_zs_cal.wilcoxon_p,2.7e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
50
+ immicro.coverage.lora_10_minus_zs_cal.mean,0.258,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
51
+ immicro.coverage.lora_10_minus_zs_cal.frac_donors_lower,0.01,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
52
+ immicro.coverage.lora_10_vs_zs_cal.wilcoxon_p,2.9e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
53
+ immicro.coverage.lora_20_minus_zs_cal.mean,0.228,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
54
+ immicro.coverage.lora_20_minus_zs_cal.frac_donors_lower,0.03,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
55
+ immicro.coverage.lora_20_vs_zs_cal.wilcoxon_p,5.2e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
56
+ immicro.coverage.lora_40_minus_zs_cal.mean,0.251,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
57
+ immicro.coverage.lora_40_minus_zs_cal.frac_donors_lower,0.03,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
58
+ immicro.coverage.lora_40_vs_zs_cal.wilcoxon_p,5.9e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
59
+ immicro.coverage.lora_all_minus_zs_cal.mean,0.257,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
60
+ immicro.coverage.lora_all_minus_zs_cal.frac_donors_lower,0.04,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
61
+ immicro.coverage.lora_all_vs_zs_cal.wilcoxon_p,7.3e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
62
+ immicro.coverage.zs_cal_minus_zero_shot.mean,0.335,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
63
+ immicro.coverage.zs_cal_vs_zero_shot.wilcoxon_p,2.7e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
64
+ immicro.cal_alpha_fit_pairs,85–86,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/PREPARE.json fold_sizes train+inner_val; tools/prepare_dataset.py fit = fold != f
65
+ immicro.fewshot_n5.coverage.zs_cal_same5,0.535,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/fewshot_n5/aggregate.json
66
+ immicro.fewshot_n5.coverage.lora5_fixed3k,0.792,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/fewshot_n5/aggregate.json
67
+ immicro.n_scored_donors,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
68
+ immicro.selected_step.lora_n5.range,2750–5000,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n5/RUN.json
69
+ immicro.n_train.all,78–79,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/RUN.json
70
+ immicro.n_inner_val,7,"RUN.json inner_val_rows (all LoRA arms, 5 folds)"
71
+ immicro.folds_cap_limited.lora_n5,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n5/RUN.json
72
+ immicro.folds_cap_limited.lora_n10,1/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n10/RUN.json
73
+ immicro.folds_cap_limited.lora_n20,4/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n20/RUN.json
74
+ immicro.folds_cap_limited.lora_n40,5/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n40/RUN.json
75
+ immicro.folds_cap_limited.real_lora,5/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/RUN.json
76
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77
+ ye2026_sepsis.coverage.zero_shot,0.067,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
78
+ ye2026_sepsis.coverage.zs_cal,0.431,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
79
+ ye2026_sepsis.coverage.zs_len,0.399,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
80
+ ye2026_sepsis.coverage.lora_n5,0.767,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
81
+ ye2026_sepsis.coverage.lora_all,0.829,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
82
+ ye2026_sepsis.coverage.zs_pseudo,0.48,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
83
+ ye2026_sepsis.comp_l1.zero_shot,0.511,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
84
+ ye2026_sepsis.comp_l1.zs_cal,0.401,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
85
+ ye2026_sepsis.comp_l1.zs_len,0.557,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
86
+ ye2026_sepsis.comp_l1.lora_n5,0.428,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
87
+ ye2026_sepsis.comp_l1.lora_all,0.362,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
88
+ ye2026_sepsis.comp_l1.zs_pseudo,0.233,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
89
+ ye2026_sepsis.comp_l1.null,0.515,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
90
+ ye2026_sepsis.comp_l1.lora_5_minus_zero_shot.mean,-0.083,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
91
+ ye2026_sepsis.comp_l1.lora_5_minus_zero_shot.frac_donors_lower,0.61,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
92
+ ye2026_sepsis.comp_l1.lora_5_vs_zero_shot.wilcoxon_p,0.042,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
93
+ ye2026_sepsis.comp_l1.lora_10_minus_zero_shot.mean,-0.121,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
94
+ ye2026_sepsis.comp_l1.lora_10_minus_zero_shot.frac_donors_lower,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
95
+ ye2026_sepsis.comp_l1.lora_10_vs_zero_shot.wilcoxon_p,0.0053,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
96
+ ye2026_sepsis.comp_l1.lora_20_minus_zero_shot.mean,-0.131,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
97
+ ye2026_sepsis.comp_l1.lora_20_minus_zero_shot.frac_donors_lower,0.62,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
98
+ ye2026_sepsis.comp_l1.lora_20_vs_zero_shot.wilcoxon_p,0.0012,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
99
+ ye2026_sepsis.comp_l1.lora_40_minus_zero_shot.mean,-0.146,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
100
+ ye2026_sepsis.comp_l1.lora_40_minus_zero_shot.frac_donors_lower,0.68,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
101
+ ye2026_sepsis.comp_l1.lora_40_vs_zero_shot.wilcoxon_p,0.00026,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
102
+ ye2026_sepsis.comp_l1.lora_all_minus_zero_shot.mean,-0.149,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
103
+ ye2026_sepsis.comp_l1.lora_all_minus_zero_shot.frac_donors_lower,0.67,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
104
+ ye2026_sepsis.comp_l1.lora_all_vs_zero_shot.wilcoxon_p,0.00063,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
105
+ ye2026_sepsis.comp_l1.lora_5_minus_zs_cal.mean,0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
106
+ ye2026_sepsis.comp_l1.lora_5_minus_zs_cal.frac_donors_lower,0.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
107
+ ye2026_sepsis.comp_l1.lora_5_vs_zs_cal.wilcoxon_p,0.61,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
108
+ ye2026_sepsis.comp_l1.lora_10_minus_zs_cal.mean,-0.011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
109
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110
+ ye2026_sepsis.comp_l1.lora_10_vs_zs_cal.wilcoxon_p,0.46,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
111
+ ye2026_sepsis.comp_l1.lora_20_minus_zs_cal.mean,-0.02,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
112
+ ye2026_sepsis.comp_l1.lora_20_minus_zs_cal.frac_donors_lower,0.62,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
113
+ ye2026_sepsis.comp_l1.lora_20_vs_zs_cal.wilcoxon_p,0.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
114
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115
+ ye2026_sepsis.comp_l1.lora_40_minus_zs_cal.frac_donors_lower,0.59,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
116
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117
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118
+ ye2026_sepsis.comp_l1.lora_all_minus_zs_cal.frac_donors_lower,0.54,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
119
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120
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121
+ ye2026_sepsis.comp_l1.zs_cal_vs_zero_shot.wilcoxon_p,0.00014,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
122
+ ye2026_sepsis.coverage.lora_5_minus_zs_cal.mean,0.336,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
123
+ ye2026_sepsis.coverage.lora_5_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
124
+ ye2026_sepsis.coverage.lora_5_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
125
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126
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127
+ ye2026_sepsis.coverage.lora_10_vs_zs_cal.wilcoxon_p,3.8e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
128
+ ye2026_sepsis.coverage.lora_20_minus_zs_cal.mean,0.376,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
129
+ ye2026_sepsis.coverage.lora_20_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
130
+ ye2026_sepsis.coverage.lora_20_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
131
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132
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133
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134
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135
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136
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137
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138
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139
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140
+ ye2026_sepsis.fewshot_n5.coverage.zs_cal_same5,0.428,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fewshot_n5/aggregate.json
141
+ ye2026_sepsis.fewshot_n5.coverage.lora5_fixed3k,0.694,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fewshot_n5/aggregate.json
142
+ ye2026_sepsis.n_scored_donors,82,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
143
+ ye2026_sepsis.selected_step.lora_n5.range,2000–3000,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n5/RUN.json
144
+ ye2026_sepsis.n_train.all,58–59,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/real_lora/RUN.json
145
+ ye2026_sepsis.n_inner_val,7–8,"RUN.json inner_val_rows (all LoRA arms, 5 folds)"
146
+ ye2026_sepsis.folds_cap_limited.lora_n5,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n5/RUN.json
147
+ ye2026_sepsis.folds_cap_limited.lora_n10,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n10/RUN.json
148
+ ye2026_sepsis.folds_cap_limited.lora_n20,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n20/RUN.json
149
+ ye2026_sepsis.folds_cap_limited.lora_n40,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n40/RUN.json
150
+ ye2026_sepsis.folds_cap_limited.real_lora,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/real_lora/RUN.json
151
+ immicro.nk_fraction_r.zero_shot,0.49,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
152
+ sepsis.logfc_r.zero_shot,-0.01,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
153
+ sepsis.top50_deg.zero_shot,9,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
154
+ immicro.nk_fraction_r.zs_cal,0.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
155
+ sepsis.logfc_r.zs_cal,0.12,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
156
+ sepsis.top50_deg.zs_cal,11,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
157
+ immicro.nk_fraction_r.5,0.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
158
+ sepsis.logfc_r.5,0.29,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
159
+ sepsis.top50_deg.5,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
160
+ immicro.nk_fraction_r.10,0.4,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
161
+ sepsis.logfc_r.10,0.42,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
162
+ sepsis.top50_deg.10,8,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
163
+ immicro.nk_fraction_r.20,0.56,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
164
+ sepsis.logfc_r.20,0.37,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
165
+ sepsis.top50_deg.20,18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
166
+ immicro.nk_fraction_r.40,0.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
167
+ sepsis.logfc_r.40,0.48,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
168
+ sepsis.top50_deg.40,22,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
169
+ immicro.nk_fraction_r.all,0.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
170
+ sepsis.logfc_r.all,0.53,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
171
+ sepsis.top50_deg.all,23,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
172
+ immicro.nk_fraction_r.pseudo,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
173
+ sepsis.logfc_r.pseudo,0.47,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
174
+ sepsis.top50_deg.pseudo,22,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
175
+ sepsis.logfc_r.broadcast,0.32,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
176
+ sepsis.top50_deg.broadcast,21,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
177
+ sepsis.logfc_r.first_n_above_broadcast,10,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
178
+ sepsis.logfc_r.first_n_above_zero_shot,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
179
+ sepsis.top50_deg.first_n_at_or_above_broadcast,40,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
180
+ sepsis.top50_deg.first_n_above_zero_shot,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
181
+ sepsis.logfc_r.first_n_above_zs_cal,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
182
+ sepsis.top50_deg.first_n_above_zs_cal,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
183
+ immicro.nk_fraction_r.first_n_above_zs_cal,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
184
+ immicro.coverage.first_n_better_than_zs_cal,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
185
+ immicro.comp_l1.first_n_better_than_zs_cal,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
186
+ ye2026_sepsis.coverage.first_n_better_than_zs_cal,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
187
+ ye2026_sepsis.comp_l1.first_n_better_than_zs_cal,10,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
188
+ immicro.fraction_r.T.first_n_at_or_above_zero_shot,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
189
+ immicro.fraction_r.T.zero_shot,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
190
+ immicro.fraction_r.T.zs_cal,0.67,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
191
+ immicro.fraction_r.T.first_n_at_or_above_zs_cal,40,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
192
+ immicro.fraction_r.T.lora_5_10_20_40_all,0.63/0.60/0.64/0.70/0.74,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
193
+ immicro.fraction_r.B.first_n_at_or_above_zero_shot,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
194
+ immicro.fraction_r.B.zero_shot,0.53,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
195
+ immicro.fraction_r.B.zs_cal,0.72,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
196
+ immicro.fraction_r.B.first_n_at_or_above_zs_cal,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
197
+ immicro.fraction_r.B.lora_5_10_20_40_all,0.73/0.72/0.74/0.77/0.75,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
198
+ immicro.fraction_r.Mono.first_n_at_or_above_zero_shot,all,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
199
+ immicro.fraction_r.Mono.zero_shot,0.84,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
200
+ immicro.fraction_r.Mono.zs_cal,0.85,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
201
+ immicro.fraction_r.Mono.first_n_at_or_above_zs_cal,all,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
202
+ immicro.fraction_r.Mono.lora_5_10_20_40_all,0.81/0.76/0.79/0.81/0.86,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
203
+ immicro.fraction_r.NK.first_n_at_or_above_zero_shot,20,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
204
+ immicro.fraction_r.NK.zero_shot,0.49,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
205
+ immicro.fraction_r.NK.zs_cal,0.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
206
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207
+ immicro.fraction_r.NK.lora_5_10_20_40_all,0.20/0.40/0.56/0.70/0.70,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
208
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209
+ sepsis.top50_deg.T.zs_cal,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
210
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211
+ sepsis.top50_deg.B.zero_shot_5_10_20_40_all,0/0/1/1/3/1,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
212
+ sepsis.top50_deg.B.zs_cal,1,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
213
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214
+ sepsis.top50_deg.Mono.zero_shot_5_10_20_40_all,4/1/4/13/12/19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
215
+ sepsis.top50_deg.Mono.zs_cal,4,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
216
+ sepsis.top50_deg.Mono.broadcast,13,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
217
+ sepsis.top50_deg.NK.zero_shot_5_10_20_40_all,1/0/0/0/0/0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
218
+ sepsis.top50_deg.NK.zs_cal,0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
219
+ sepsis.top50_deg.NK.broadcast,2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
220
+ sepsis.top50_deg.DC.zero_shot_5_10_20_40_all,1/0/0/4/7/2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
221
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222
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223
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224
+ sepsis.n_control,21,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
225
+ final_checkpoint,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt,RUN.json source_checkpoint (all 50 LoRA runs)
226
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228
+ immicro.cal_budget.n_drawn,"5,10,20,40",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores
229
+ ye2026_sepsis.cal_budget.n_drawn,"5,10,20,40",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores
230
+ scsemi.found,immicro:/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled:scsemi_n5__raw:drawn;immicro:/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled:scsemi_n10__raw:drawn;immicro:/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled:scsemi_n20__raw:drawn;immicro:/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled:scsemi_n40__raw:drawn;immicro:/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled:scsemi__raw:drawn,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/<dataset>/{scsemi_budget_20261002,scsemi_cv_20261002}/pooled*"
231
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232
+ immicro.coverage.scsemi_5,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
233
+ immicro.comp_l1.scsemi_5,0.218,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
234
+ immicro.coverage.scsemi_10,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
235
+ immicro.comp_l1.scsemi_10,0.227,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
236
+ immicro.coverage.scsemi_20,0.037,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
237
+ immicro.comp_l1.scsemi_20,0.223,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
238
+ immicro.coverage.scsemi_40,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
239
+ immicro.comp_l1.scsemi_40,0.221,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
240
+ immicro.coverage.scsemi_all,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled/summary.json
241
+ immicro.comp_l1.scsemi_all,0.217,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled/summary.json
242
+ ye2026_sepsis.scsemi.pairs_drawn,none,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis