Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.18543774431851662,0.2972215819948346,0.6666666666666666,0.3333333333333333,0.07421875,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.2260446813291729,0.0753482271097243,0.42063091459627394,-0.15059878147347025,0.4287942000606354,0.011684421023189756,0.35919106761384345
+lora3_raw_s13,BD,ifng_response_log2fc_high_vs_other,-1.0725831923378424,-1.0594253052734575,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.43379902802731357,0.14459967600910453,0.842500384238548,-1.6226059387599778,-0.5285356267889082,-1.4060306431640202,-0.7391357415116647
+lora3_raw_s13,BD,ifng_response_c1q_high_minus_other,0.07628746503388188,0.07650380507386081,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.02063216391629566,0.006877387972098553,0.030892687443192735,0.04847124609402903,0.10135987985966183,0.060428179930819226,0.09214675013694454
+lora3_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.016351336620741157,0.02673610241622438,0.6666666666666666,0.3333333333333333,0.65234375,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.10530715814062061,0.03510238604687354,0.10660371332228963,-0.16506406711507768,0.19960546825480857,-0.06459491075888223,0.09729758400036455
+lora3_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-0.8834532883561435,-0.9005655326980706,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2302792898149287,0.0767597632716429,0.25379284110565015,-1.3695833270746476,-0.6249678824282535,-1.0604616198778447,-0.7064449568344421
+lora3_raw_s13,BD,proinflammatory_c1q_high_minus_other,0.007887275637086515,0.008129754366019593,0.8888888888888888,0.7777777777777778,0.0546875,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.010778754248996596,0.0035929180829988652,0.012258087113549587,-0.014370922625923821,0.020897045099758982,-0.0003980083197586935,0.016172559593931723
+lora3_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.32652549432974703,0.2773184159226413,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.14356246693067454,0.04785415564355818,0.15804074962885217,0.15476908090971103,0.5850294133826356,0.2161736135289981,0.43687737513049596
+lora3_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.720657636382499,-0.6692893669946691,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.19000907611206694,0.06333635870402231,0.362918909409618,-0.9780154917608767,-0.48671508033310845,-0.8667115414627489,-0.5746037313022492
+lora3_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.11479264012845955,0.11558389833738314,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02531027099035445,0.008436756996784816,0.02393150969332075,0.06712429727790936,0.14885068765629406,0.09533744360616109,0.134247836650758
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.286958713396211,1.1368943911016813,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.4520259982650324,0.1506753327550108,0.5394410575063946,0.6670371229258788,2.1337863444543284,0.9395007729898924,1.6344166538025298
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.5377711542506025,0.5042933891617101,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2446839917356647,0.0815613305785549,0.3290701018068664,0.1321885648433706,0.9273911514064311,0.34969038866370095,0.7258519198375041
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6631900426569275,0.615483474296475,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.1099995914794547,0.03666653049315157,0.1133585410101734,0.514168982519122,0.8648461767415427,0.5786368717161303,0.7477432135977247
+lora3_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.2711195239834569,0.18877149120505227,0.8,0.6,0.01953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3554066865070946,0.11238946250158519,0.3032959135881778,-0.17439555881445154,0.8486938045883082,0.016876896362455707,0.5253621516044581
+lora3_raw_s13,HC,ifng_response_log2fc_high_vs_other,-1.6544789016021728,-1.620661585837714,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5554683037125596,0.17565450077618516,0.6903093895020451,-2.559669643694668,-0.7248841955621989,-2.051836988710763,-1.2571208144935828
+lora3_raw_s13,HC,ifng_response_c1q_high_minus_other,0.11075061153690322,0.10707504833632236,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04397991700129765,0.013907670902926305,0.044069079965320196,0.04268899928084968,0.18004913965184527,0.0792892741860083,0.14221194888779815
+lora3_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.038969145762568436,0.009111798885117168,0.5,0.0,0.4921875,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.15871497127936784,0.050190080801101086,0.11301595745202969,-0.22463737920016325,0.37557593408586204,-0.07456870502306305,0.15250699654819994
+lora3_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-1.2281438988905076,-1.0745316799615576,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.3316002573213918,0.10486120858335234,0.5650924411791147,-1.7794245562311262,-0.8668488468788335,-1.4653564329870146,-0.9909313647940005
+lora3_raw_s13,HC,proinflammatory_c1q_high_minus_other,0.019411948708958425,0.016778154413522345,0.9,0.8,0.013671875,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.020096990093181166,0.006355226280829203,0.02125516339985655,-0.014638460310667845,0.05084690856694751,0.005035428056577248,0.0337884693613396
+lora3_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.39655116909576804,0.381228759126227,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.20772278319434895,0.06568771168034893,0.14648990561557507,0.019987884325348704,0.81350313250697,0.2479552416102434,0.5451470965812927
+lora3_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.2082334575439775,-1.1304995109225515,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.40586471623663434,0.1283456925205687,0.4834618318161473,-2.03799236025131,-0.6665598766335014,-1.498571585193678,-0.9178953298942769
+lora3_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.13504879004460074,0.14009430775057968,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.04146499735809948,0.013112383482445884,0.04893572444029501,0.05258222101009591,0.190713031277645,0.10538651782842892,0.16471106226077256
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.5629874737065872,1.436935800665909,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.640285997940625,0.20247621074062552,0.8798808985944186,0.9428964034836163,2.921505572968143,1.1049544632834423,2.021020484129732
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.1438393444522527,0.14189895548570564,0.6,0.2,0.375,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.45825813101824814,0.14491394503095203,0.38330030856445807,-0.6883541560489335,0.9741195074305091,-0.1839787742888608,0.4716574631933662
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7489780339467468,0.7131611580765675,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.15242005426175673,0.04819945325536054,0.13670139496411104,0.5089979890275642,1.0413337619407326,0.6399432955221757,0.8580127723713179

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3_raw_s13,BDU1,BD,generated,808,9,0.011138613861386138,0.3428775900421293,0.24672881968269184,0.09614877035943747,0.17698790167133094,0.1617629403530802,0.01522496131825074,0.5388951711677783,0.4354209399175596,0.1034742312502187,0.3852517433943918,-0.03805555277706431,0.2773184159226413,1.1215759247539894,-1.0594253052734575,-1.0392556514306448,-0.9479186284264207,0.35410009379931084,1.9167864562992467,1.2261513019249015,0.6906351543743452,-0.7413338344376909
+lora3_raw_s13,BDU2,BD,generated,560,5,0.008928571428571428,0.35400214641077826,0.2616144409935789,0.09238770541719937,0.14545808493316353,0.15982900755908735,-0.014370922625923821,0.5777001857728667,0.4502944448293273,0.12740574094353946,0.2972215819948346,-0.09229651897323597,0.5850294133826356,2.1337863444543284,-1.5803737428230868,-1.3695833270746476,-0.9151762850897979,0.9273911514064311,2.098887062871599,1.2340408861300562,0.8648461767415427,-0.9431753161600835
+lora3_raw_s13,BDU3,BD,generated,841,17,0.020214030915576695,0.33801048863538313,0.288970236725113,0.049040251910270116,0.17894265526607803,0.17671656155513646,0.002226093710941568,0.5465152218893718,0.4424404760101953,0.10407474587917653,0.4287942000606354,0.04617464625317315,0.33474169228004536,1.0088514823576566,-0.5285356267889082,-0.6901697201927154,-0.48671508033310845,0.5042933891617101,1.830732393144385,1.2271713859517057,0.6035610071926794,-0.564253784468315
+lora3_raw_s13,BDV1,BD,generated,930,18,0.01935483870967742,0.3579954209580744,0.29480001651018906,0.06319540444788535,0.19943834009768324,0.17933222236003898,0.020106117737644258,0.5230275617612833,0.4559032644833739,0.06712429727790936,0.35057712168115157,0.06854816054522532,0.1655068520579315,0.9680150215172051,-0.577278853261694,-0.6610279367527415,-0.6692893669946691,0.38482477108133245,1.8026575625195786,1.2884885800004566,0.514168982519122,-0.5655346527188064
+lora3_raw_s13,BDV2,BD,generated,758,10,0.013192612137203167,0.3740131606007473,0.2799250687096692,0.09408809189107809,0.19165243618157826,0.17075539108181928,0.020897045099758982,0.5902074053567686,0.44607111085578305,0.14413629450098558,0.11400538694238056,0.02673610241622438,0.48515546777747415,1.2289324093320884,-1.2016126285030897,-0.910785452471201,-0.60212321471463,0.468693804106968,1.9014133725747366,1.2859298982782617,0.615483474296475,-0.7075263938666919
+lora3_raw_s13,BDV3,BD,generated,893,10,0.011198208286674132,0.31064136365488937,0.24524933340337454,0.06539203025151483,0.1677512668231853,0.15962151245716572,0.008129754366019593,0.5789102197306653,0.4300595320743712,0.14885068765629406,-0.15059878147347025,0.07692388122021616,0.2506665196362723,1.7692431842590224,-1.6226059387599778,-0.9439625612983655,-0.9780154917608767,0.7991327645950478,1.9094293392827748,1.129054023127977,0.7803753161547977,-0.808726669888845
+lora3_raw_s13,BDV4,BD,generated,683,16,0.02342606149341142,0.3614811086154266,0.26012122875576477,0.10135987985966183,0.1650079919902445,0.15547571777959615,0.00953227421064834,0.5676827562191394,0.4520988578817563,0.11558389833738314,0.36317890165795563,-0.16506406711507768,0.2768347377358878,0.6670371229258788,-0.6724113575642977,-0.9005655326980706,-0.5522573756801799,0.1321885648433706,1.890652474458253,1.2850832864886081,0.6055691879696448,-0.5491781553341624
+lora3_raw_s13,BDV5,BD,generated,962,18,0.018711018711018712,0.3305886426842159,0.28211739659018686,0.04847124609402903,0.19638393193870618,0.19011064922696835,0.0062732827117378265,0.5320511760500086,0.4350165635477563,0.09703461250225232,-0.057452012938318295,0.024589909762400764,0.15476908090971103,1.1368943911016813,-0.8960935362632222,-0.6249678824282535,-0.5496964538929856,0.7138948728881989,1.794479662144899,1.2173281256840103,0.5771515364608888,-0.48403142109277575
+lora3_raw_s13,BDV6,BD,generated,1011,12,0.011869436201780416,0.3180013179843035,0.24149751291044266,0.07650380507386081,0.16709847227997213,0.16413159807527097,0.002966874204701153,0.5297283143604041,0.40427906155202736,0.12544925280837677,-0.062038442452911534,0.19960546825480857,0.40870726926512446,1.5482925398640512,-1.5149117418028457,-0.8107615308586509,-0.7847268305498225,0.5554209763730531,1.8367771369628978,1.119857588760045,0.7169195482028528,-0.7467534915423977
+lora3_raw_s13,HC1,HC,generated,912,6,0.006578947368421052,0.2688728298886273,0.22618383060777764,0.04268899928084968,0.155626676991881,0.15371296695988446,0.0019137100319965572,0.5075983473611126,0.4147442547160126,0.09285409264510003,-0.17439555881445154,0.08232775207715344,0.537068503212678,0.9428964034836163,-2.2701201304340444,-1.3470539315383154,-1.2041357481280475,-0.6883541560489335,1.6553805201799856,1.1463825311524214,0.5089979890275642,-1.0912975596883552
+lora3_raw_s13,HC10,HC,generated,655,9,0.013740458015267175,0.42209830268299575,0.24204916303115048,0.18004913965184527,0.20338137497928127,0.15636961268837263,0.04701176229090864,0.5570950485527578,0.4152071136229809,0.14188793492977692,0.8486938045883082,0.0763784529458895,0.3250438846718876,1.0280073736579187,-0.7248841955621989,-0.964482673453108,-0.948250352440733,-0.019174727924024533,1.8116124316058142,1.134813055457516,0.6767993761482982,-0.8243491187126704
+lora3_raw_s13,HC2,HC,generated,671,7,0.010432190760059613,0.335942940821909,0.24077696341344162,0.09516597740846738,0.16672236480224947,0.15841493669922668,0.00830742810302279,0.5250773495857388,0.4147674317486442,0.1103099178370946,0.1927445494582957,0.174344236570272,0.2149489190898583,1.0347137740229504,-1.6202890653066113,-0.9978129448292682,-1.3601801505455042,-0.2724947866027264,1.7807508078987575,1.1503961122720228,0.6303546956267347,-0.9378996571481893
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_D/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_D/sample.csv

@@ -0,0 +1,20 @@
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