Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.21907696834421114,0.20068891261828817,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.138318339679323,0.046106113226441,0.16112848710951125,-0.04201565193297238,0.3899200067661996,0.11275608058584671,0.32539785610257554
+lora3_raw_s13,BD,ifng_response_log2fc_high_vs_other,-0.389696478025976,-0.3293668889537021,0.1111111111111111,-0.7777777777777778,0.0078125,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.23035434796313906,0.07678478265437969,0.18201088876903693,-0.7884429257073028,0.023753143087708418,-0.5667625043477287,-0.21263045170422334
+lora3_raw_s13,BD,ifng_response_c1q_high_minus_other,0.07859297066279286,0.07935026646353655,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.015256526599685771,0.005085508866561924,0.02465325363886306,0.05720883829880824,0.09843334920221619,0.06686576618688361,0.09032017513870211
+lora3_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.0033740977088800353,0.0032325217871542744,0.6666666666666666,0.3333333333333333,0.734375,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.10120649231599389,0.03373549743866463,0.07380642980154166,-0.19109963263815397,0.19681628538902693,-0.07442009888785014,0.0811682943056102
+lora3_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-0.4568112719463234,-0.466450149624842,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.16607809387796432,0.05535936462598811,0.1196937296124917,-0.6676015545284579,-0.10516771946033902,-0.5844701956961272,-0.3291523481965196
+lora3_raw_s13,BD,proinflammatory_c1q_high_minus_other,0.008479937300918663,0.00949768478633592,0.7777777777777778,0.5555555555555556,0.0390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.010159023986925093,0.003386341328975031,0.00781800376261449,-0.008867010679295184,0.0214474323105511,0.0006710201930894711,0.016288854408747853
+lora3_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.17796739583249332,0.16199351157137315,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.09497164919258518,0.031657216397528394,0.0848550881977548,0.05301181238824034,0.3882664564388676,0.10496572391073972,0.25096906775424693
+lora3_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.3372133858903863,-0.35074102306750876,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.1427309800661308,0.047576993355376934,0.1272782103485352,-0.5531568577535445,-0.09601124542826624,-0.44692612930846665,-0.22750064247230595
+lora3_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.10213579416110169,0.10137684795927909,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.011471851817620823,0.003823950605873608,0.010824799650122952,0.08763880736685487,0.12445185100133105,0.09331774825114067,0.11095384007106271
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9867719207748765,0.979127104609334,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.18916872545515184,0.06305624181838394,0.24215654496020333,0.6563988027623674,1.2492981344970264,0.8413639663912493,1.1321798751585037
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.6548699740837809,0.6687622800683302,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.1382876842178072,0.04609589473926907,0.13517758205880404,0.3585043562795147,0.8565906977295208,0.5485726501990905,0.7611672979684713
+lora3_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6403698533686164,0.6237266089846545,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.05046886178081938,0.016822953926939794,0.08341918988018238,0.5830607177081053,0.7222105198299344,0.6015760520467441,0.6791636546904887
+lora3_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.34206393343754476,0.2791070338870163,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.15566756232702075,0.049226405475960654,0.13354825960701489,0.2160794373614273,0.649948823790345,0.2307060676912916,0.45342179918379794
+lora3_raw_s13,HC,ifng_response_log2fc_high_vs_other,-0.6427307522804051,-0.6187934890747497,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.27255421142245656,0.08618920939660436,0.3199363500856457,-1.2041350703042295,-0.2584013790577109,-0.837704289672848,-0.44775721488796216
+lora3_raw_s13,HC,ifng_response_c1q_high_minus_other,0.10158311235047698,0.09388645758698984,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.02600127926088116,0.008222326454248387,0.027306743621469107,0.06761322720276064,0.1502847911798503,0.08298291766713382,0.12018330703382014
+lora3_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.0954069138799052,0.06626244470809063,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.08619278034568904,0.02725655037549726,0.13543668066961523,0.005361795828228488,0.25487863278044487,0.033748313214803975,0.15706551454500642
+lora3_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-0.5846137267518963,-0.5774129870669189,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.14726786096508426,0.046570186679066886,0.12497364849999837,-0.9023954344599567,-0.33984351041134836,-0.6899628081207969,-0.47926464538299557
+lora3_raw_s13,HC,proinflammatory_c1q_high_minus_other,0.014411877512358529,0.012941208690639042,0.9,0.8,0.00390625,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.011129595245924467,0.003519487041290314,0.0072102988601536536,-0.010315082222710742,0.03085638921191916,0.006450244692528183,0.022373510332188873
+lora3_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.2978975160164779,0.29973125100702935,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.13721607920705342,0.04339153418923599,0.15225101802493496,0.04385489650818001,0.5277291463322674,0.1997390461454945,0.39605598588746127
+lora3_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.5255884665662339,-0.5102931824182155,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.16962426170063974,0.053639901339848785,0.1268201868089296,-0.8723085369737985,-0.27523372484571273,-0.6469303535939619,-0.40424657953850596
+lora3_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.1199058913235834,0.11985697050955224,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.015898323410977966,0.005027491295666757,0.021344706242733255,0.09176027791468128,0.14202064917853685,0.10853291587818521,0.13127886676898157
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.3584727657386955,1.4708991142672647,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3275462487717254,0.10357921851627816,0.5930048292406291,0.8393504228483334,1.7119939478760378,1.1241602946550564,1.5927852368223345
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.7332158636756569,0.6771091712759024,1.0,1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2848654034213703,0.09008235013942523,0.5556534798788735,0.4146430284224832,1.068784418149932,0.5294354300660603,0.9369962972852536
+lora3_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7788743925097187,0.7524306960804957,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09211987399934836,0.029130861960566523,0.16973728929352772,0.6538205003539099,0.8976170010389404,0.7129758044671374,0.8447729805523

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3_raw_s13,BDU1,BD,generated,808,28,0.034653465346534656,0.3428220762556666,0.24438872705345038,0.09843334920221619,0.18109555821372267,0.16124462157329333,0.019850936640429334,0.5344372882956409,0.43306044033636176,0.10137684795927909,0.3899200067661996,0.04492671191677829,0.05301181238824034,0.6563988027623674,-0.32594403214675144,-0.466450149624842,-0.5531568577535445,0.3585043562795147,1.8359563407830695,1.212229731798415,0.6237266089846545,-0.37505703237937776
+lora3_raw_s13,BDU2,BD,generated,560,18,0.03214285714285714,0.3392390534048697,0.25988878694133316,0.07935026646353655,0.1549240015552408,0.15985933135048888,-0.004935329795248078,0.5387564565052954,0.44853192175654183,0.09022453474875353,0.30223260207279706,0.01762662134802723,0.3882664564388676,1.2492981344970264,-0.6212912054238277,-0.6267895344822855,-0.3551457844576591,0.7421307883812759,1.9051408845373647,1.2197317180717098,0.685409166465655,-0.5001863062405892
+lora3_raw_s13,BDU3,BD,generated,841,38,0.04518430439952437,0.3445854346281066,0.28737659632929835,0.05720883829880824,0.18233217166072152,0.17649794438088218,0.0058342272798393435,0.5364330354534429,0.44019583518965055,0.09623720026379234,0.20068891261828817,0.0018164358555996221,0.1523414633368,1.152140160860465,-0.37823930107193987,-0.46513513031641407,-0.35074102306750876,0.8565906977295208,1.8073298097981354,1.2124945702806111,0.5948352395175243,-0.34071756407667275
+lora3_raw_s13,BDV1,BD,generated,930,64,0.06881720430107527,0.37558893465635157,0.2901430032523456,0.08544593140400597,0.19969285300543127,0.17824542069488017,0.0214474323105511,0.5388101940862757,0.45117138671942086,0.08763880736685487,0.3792406448278392,0.19681628538902693,0.2339584978256832,0.79773091503918,0.023753143087708418,-0.10516771946033902,-0.09601124542826624,0.5863629813572804,1.8413763469042883,1.258315629196183,0.5830607177081053,-0.22561803229276245
+lora3_raw_s13,BDV2,BD,generated,758,50,0.06596306068601583,0.3519235166324368,0.2761693604085003,0.0757541562239365,0.17838548804626567,0.17051169843037192,0.007873789615893745,0.5528734021910814,0.44056439952562065,0.11230900266546073,0.14110411496328581,-0.03763587617488051,0.12114542990379103,0.979127104609334,-0.3204343037461592,-0.40491686838939034,-0.2882805130116506,0.7419166104603236,1.8563306082591051,1.2543406316736325,0.6019899765854726,-0.2542321207597382
+lora3_raw_s13,BDV3,BD,generated,893,40,0.04479283314669653,0.33513557180893033,0.24180088178120918,0.09333469002772116,0.17275326007516495,0.15910102903271112,0.013652231042453833,0.550603693082992,0.4261518420816609,0.12445185100133105,0.12500457997132738,-0.19109963263815397,0.11300536958243183,1.0551481638701123,-0.5024451925151961,-0.6676015545284579,-0.4155587233601858,0.6363843066851103,1.827653492978461,1.1054429731485265,0.7222105198299344,-0.351148556641253
+lora3_raw_s13,BDV4,BD,generated,683,37,0.05417276720351391,0.34980423597129917,0.25749504734830314,0.09230918862299603,0.16701629306377083,0.15505081855646288,0.01196547450730795,0.5558283148928603,0.4490204561232228,0.10680785876963755,0.29761785015245074,-0.041486741730292716,0.16199351157137315,0.9099836159002616,-0.3293668889537021,-0.509698344581223,-0.3493842547792872,0.6067390284015196,1.9162068471534457,1.2639339602702107,0.652272886883235,-0.33929144254478566
+lora3_raw_s13,BDV5,BD,generated,962,46,0.04781704781704782,0.3474451708886883,0.27978923590455534,0.06765593498413297,0.1992715622759236,0.18977387748958768,0.00949768478633592,0.5282256125898727,0.43224255347035806,0.0959830591195146,0.1778996556586845,0.0032325217871542744,0.20600051810154582,0.9207429747105116,-0.26485759575661366,-0.3409315481320772,-0.15865979113123876,0.6964387173911532,1.8032296490735364,1.1992465291560381,0.6039831199174983,-0.2538467887113861
+lora3_raw_s13,BDV6,BD,generated,1011,36,0.03560830860534125,0.2981902101213466,0.24034582938356452,0.057844380737782086,0.15561554177274237,0.16448255245203755,-0.008867010679295184,0.5062509230259242,0.4020579374706328,0.10419298555529144,-0.04201565193297238,0.03617055362666115,0.17198350334370724,1.1603774147246302,-0.7884429257073028,-0.524610598001882,-0.46798228002413494,0.6687622800683302,1.7994297627395364,1.1035893183140684,0.695840444425468,-0.4010903474265226
+lora3_raw_s13,HC1,HC,generated,912,21,0.023026315789473683,0.2925210229689013,0.22490779576614067,0.06761322720276064,0.16563714106624006,0.15344481275557298,0.012192328310667078,0.5200875022996448,0.4128866973160286,0.10720080498361623,0.22856857024325167,0.25487863278044487,0.5277291463322674,1.7119939478760378,-0.7802964722065125,-0.48184780061333377,-0.3474019508615597,1.0669667532446168,1.8207781469473714,1.1339152808746118,0.6868628660727596,-0.5836595450426268
+lora3_raw_s13,HC10,HC,generated,655,22,0.03358778625954199,0.3897601784108632,0.2394753872310129,0.1502847911798503,0.18683556724068254,0.15597917802876338,0.03085638921191916,0.5234914513831842,0.4134610409273151,0.11003041045586909,0.649948823790345,0.01924745584743685,0.04385489650818001,1.0041644108963441,-0.2584013790577109,-0.6151474968996932,-0.6959849863870601,0.4210272072821103,1.8169151363396656,1.120729245988207,0.6961858903514586,-0.49882110823155523
+lora3_raw_s13,HC2,HC,generated,671,29,0.043219076005961254,0.3260590492236426,0.23796229262428809,0.08809675659935451,0.1486323274738032,0.15894740969651394,-0.010315082222710742,0.5037126893434059,0.4119524114287246,0.09176027791468128,0.27801956645687814,0.005361795828228488,0.18321193294289115,0.9982134274753897,-0.5313794645900134,-0.5114153671322211,-0.5128136122786245,0.44762281984465196,1.782535075158159,1.128714574804249,0.6538205003539099,-0.4302970994773145
+lora3_raw_s13,HC3,HC,generated,494,16,0.032388663967611336,0.3104959572301802,0.23843504991149947,0.07206090731868073,0.16178243986502086,0.15146513930175745,0.01031730056326341,0.5462734496081643,0.424590223375321,0.12168322623284328,0.3034316148596911,0.17122906049888342,0.391993928063473,1.7105238432092786,-0.8571508723027244,-0.6462394019350429,-0.5713791477595246,0.9957345562638131,2.023749325062967,1.1377096355070986,0.8860396895558682,-0.6058020514123933
+lora3_raw_s13,HC4,HC,generated,795,36,0.045283018867924525,0.3413120082947068,0.2479237804252317,0.09338822786947512,0.17408530093799743,0.16164321722707967,0.012442083710917762,0.5316780268759478,0.42310773365878906,0.10857029321715872,0.2189187458953007,0.09017189354246687,0.2809285185997529,0.8393504228483334,-0.4453484986760985,-0.33984351041134836,-0.27523372484571273,0.4146430284224832,1.8753923069550673,1.1427075171335501,0.7326847898215172,-0.38692243893773587
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_B/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s13/rule_B/sample.csv

@@ -0,0 +1,20 @@
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