Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.1518249998569311,0.14661082649173393,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.055667416568959585,0.027833708284479793,0.08827488900532798,0.10292543990636448,0.21115290653789204,0.06324571776464386,0.24040428194921834
+obs,BD,ifng_response_log2fc_high_vs_other,-0.10153681440041029,-0.09594379187906449,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.02849149964538936,0.01424574982269468,0.02053744477969352,-0.14103217247716932,-0.0732275013663429,-0.14687314828964101,-0.056200480511179575
+obs,BD,ifng_response_c1q_high_minus_other,0.08066913939814763,0.08434315821569213,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.020696057668239027,0.010348028834119513,0.019906417207518956,0.052733588674245324,0.10125665248696092,0.04773709326803471,0.11360118552826054
+obs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.0981192454885574,-0.07284355086316222,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.07405049424048453,0.037025247120242265,0.04765299518205079,-0.2066497007226209,-0.04014017950528428,-0.21595010638858864,0.019711615411473843
+obs,BD,proinflammatory_log2fc_high_vs_other,-0.3196987263643405,-0.2933367399528915,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.10456527732135275,0.052282638660676374,0.06594100250446261,-0.4685397443974781,-0.22358168115410088,-0.48608541660049315,-0.15331203612818783
+obs,BD,proinflammatory_c1q_high_minus_other,0.009533942960585982,0.010015989362484698,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.009708527084273319,0.0048542635421366595,0.0073696915229772356,-0.0027793682177810752,0.02088316133515561,-0.005914490113960233,0.024982376035132196
+obs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.165468081182499,0.1650213049328983,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.030112576524752677,0.015056288262376339,0.038639711153646866,0.13198984110195272,0.19983987376224677,0.11755225223061297,0.21338391013438504
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+obs,BD,phagocytosis_antigen_c1q_high_minus_other,0.08765580592720032,0.08614091802722257,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.01143279162547724,0.00571639581273862,0.00998075695705039,0.07549274459259836,0.10284864306175778,0.06946368319341104,0.1058479286609896
+obs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.8747509840956689,0.771431158851158,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.29290589953471907,0.14645294976735954,0.24435432171791893,0.6551351874639535,1.3010064312164056,0.40867233521063506,1.3408296329807028
+obs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.7229826216639694,0.6490923212013493,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2883742549492278,0.1441871274746139,0.22820610423102572,0.46193959514673105,1.1318062491064484,0.2641148305629134,1.1818504127650256
+obs,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5351600667484149,0.509312417296732,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09709528684447978,0.04854764342223989,0.09230321938053299,0.4505830697838489,0.6714323626163468,0.38065979830907665,0.689660335187753
+obs,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.1708025670542706,0.05717753500451294,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.26872525170563966,0.13436262585281983,0.21495182890248105,0.0014055853345070664,0.5674496128735494,-0.25679927515925305,0.5984044092677943
+obs,HC,ifng_response_log2fc_high_vs_other,-0.22919093496497456,-0.19732754751271928,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.13184486073439675,0.06592243036719837,0.09987425583285925,-0.41537459746485167,-0.10673404736960797,-0.4389855299223875,-0.019396340007561602
+obs,HC,ifng_response_c1q_high_minus_other,0.10101500454142905,0.10879106309177422,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.0400819131185186,0.0200409565592593,0.047377178673462056,0.048380463781095506,0.13809742820107224,0.037235736385063,0.1647942726977951
+obs,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.1819969415038049,-0.22481201352904745,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.19757653215635756,0.09878826607817878,0.25640593227776615,-0.3508743420532893,0.07251060309616468,-0.49638529388968883,0.132391410882079
+obs,HC,proinflammatory_log2fc_high_vs_other,-0.5540247265659528,-0.580380335845619,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.17192588241574167,0.08596294120787083,0.15716284006429915,-0.7316172427718872,-0.323720991800686,-0.8275971712042619,-0.2804522819276437
+obs,HC,proinflammatory_c1q_high_minus_other,0.02717464238892575,0.027274846165858235,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.027795073270132767,0.013897536635066383,0.03546552053637923,-0.004311401572141937,0.05846027879612847,-0.017053521727886232,0.07140280650573774
+obs,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.08785292732519934,0.10968727123917328,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.09873967273556138,0.04936983636778069,0.135367261377163,-0.036599426680319895,0.16863659350277072,-0.06926392601590553,0.2449697806663042
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+obs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.649563440387698,0.6433442588166847,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.14590655593821963,0.07295327796910982,0.08952497080637312,0.47730099188615294,0.8342642520312696,0.4173935504565691,0.8817333303188268
+obs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.4216168306343105,0.4680338457166753,0.75,0.5,0.25,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.32906647502487135,0.16453323751243568,0.2712670599226427,-0.019370126448388432,0.7697697575522799,-0.10200136318350722,0.9452350244521281
+obs,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.49791312123111703,0.4918551168200973,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.041579259007184545,0.020789629503592272,0.06019259483195566,0.4608917537411803,0.5470504975430932,0.43175124162919265,0.5640750008330414

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_A/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs,PBMC_BD_1,BD,real,489,51,0.10429447852760736,0.4194482267395919,0.3299213010210064,0.0895269257185855,0.2658118476594372,0.2567652310534479,0.009046616605989322,0.6498951496001496,0.5658487531327674,0.08404639646738221,0.21115290653789204,-0.2066497007226209,0.1505698362738494,0.6551351874639535,-0.09833464321372243,-0.4685397443974781,-0.12632979053198062,0.46193959514673105,1.9934429644383833,1.5428598946545344,0.4505830697838489,-0.28428821550356626
+obs,PBMC_BD_2,BD,real,946,85,0.08985200845665962,0.4196622455140532,0.3405028548012544,0.07915939071279876,0.2367380463308614,0.22575268421188133,0.010985362118980074,0.6593912196480116,0.5711557800609487,0.08823543958706292,0.10579881159343653,-0.07686062744830663,0.13198984110195272,0.8266888327043619,-0.14103217247716932,-0.2964710644153037,-0.06640332018926369,0.6895852816954134,1.9595699467111716,1.4255302652995006,0.534039681411671,-0.233602831394094
+obs,PBMC_BD_3,BD,real,735,62,0.08435374149659863,0.41134142351749503,0.3586078348432497,0.052733588674245324,0.2600920789878426,0.26287144720562367,-0.0027793682177810752,0.6268011695809382,0.5513084249883399,0.07549274459259836,0.10292543990636448,-0.06882647427801779,0.1794727735919472,0.716173484997954,-0.0732275013663429,-0.22358168115410088,-0.0037153357981063867,0.608599360707285,1.8122068000966258,1.3276216469148328,0.48458515318179307,-0.21228115624950403
+obs,PBMC_BD_4,BD,real,1402,67,0.04778887303851641,0.40881598649139705,0.30755933400443614,0.10125665248696092,0.24582676490581173,0.22494360357065613,0.02088316133515561,0.6095187334167086,0.5066700903549508,0.10284864306175778,0.18742284139003132,-0.04014017950528428,0.19983987376224677,1.3010064312164056,-0.09355294054440653,-0.2902024154904793,-0.0702218534582338,1.1318062491064484,1.9702811225515255,1.2988487599351788,0.6714323626163468,-0.3053312657575048
+obs,PBMC_HC_1,HC,real,272,29,0.10661764705882353,0.4730902520218244,0.3349928238207522,0.13809742820107224,0.30318583458671555,0.24472555579058708,0.05846027879612847,0.7279011866868133,0.5970751665968287,0.13082602008998456,0.008216986992699305,-0.3508743420532893,0.05364843368491304,0.6431548216366221,-0.2124702930520848,-0.5435878176312864,-0.16149803539394936,0.517355238331659,1.8189473694637694,1.3580556157225891,0.4608917537411803,-0.21605395914241993
+obs,PBMC_HC_2,HC,real,743,29,0.039030955585464336,0.39188911405680077,0.34350865027570526,0.048380463781095506,0.264037161840121,0.26834856341226293,-0.004311401572141937,0.6297503796054894,0.5375994774890361,0.09215090211645327,0.0014055853345070664,-0.3251851441893159,-0.036599426680319895,0.6435336959967474,-0.41537459746485167,-0.7316172427718872,-0.42199790845381896,0.41871245310169153,1.8993374629297781,1.4332509520306658,0.46608651089911235,-0.4351877387213858
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+obs,PBMC_HC_4,HC,real,473,22,0.046511627906976744,0.4033757041374731,0.2779526826667203,0.1254230214707528,0.2500043276800575,0.20954774788465816,0.04045657979539932,0.6494823422825414,0.5176051257018527,0.13187721658068874,0.5674496128735494,0.07251060309616468,0.16863659350277072,0.47730099188615294,-0.18218480197335374,-0.6171728540599515,-0.524959116871535,-0.019370126448388432,1.7838460173523734,1.266222294611291,0.5176237227410823,-0.7080401533280913

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_B/sample.csv

@@ -0,0 +1,9 @@
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