Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3k4_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.25259791004071913,0.2661097105588459,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1265907212904372,0.0421969070968124,0.18294553267905653,0.07704169597294296,0.44593484249515214,0.15529166778264375,0.3499041522987945
+lora3k4_raw_s13,BD,ifng_response_log2fc_high_vs_other,-0.958838078102648,-1.0312460238787668,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.46742058337335984,0.15580686112445327,0.5362649112015833,-1.714369200994842,-0.24401665854319182,-1.3181293441488184,-0.5995468120564775
+lora3k4_raw_s13,BD,ifng_response_c1q_high_minus_other,0.09178556006018036,0.09609646056079033,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.030815812196802305,0.010271937398934101,0.02768679353271919,0.04603017058762443,0.1485923259469977,0.06809842994168,0.11547269017868073
+lora3k4_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.07355825108226952,0.060807490186024445,0.8888888888888888,0.7777777777777778,0.0390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.07834232023701962,0.026114106745673205,0.09032510198572585,-0.08807148304045508,0.17517795094506852,0.013339012939584102,0.13377748922495492
+lora3k4_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-0.7947260710406286,-0.7619533242574126,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2563198804860543,0.0854399601620181,0.35840087112363583,-1.228753936782877,-0.3551411839770392,-0.9917509724859216,-0.5977011695953357
+lora3k4_raw_s13,BD,proinflammatory_c1q_high_minus_other,0.019808350594375586,0.017859016257278343,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.01380156108912946,0.004600520363043153,0.0052420395795051145,0.0029227072799311027,0.05090088355144615,0.009199531613107105,0.030417169575644068
+lora3k4_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.312150548531237,0.26589744178680436,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1948254350190475,0.06494181167301584,0.2786640131901199,0.07616894209818954,0.6864696457517693,0.16239446226561233,0.4619066347968617
+lora3k4_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.6839684584879225,-0.7150264683495531,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.19203311639771578,0.0640110387992386,0.15991076816672012,-0.9269318973465934,-0.33065178874363793,-0.831578178657681,-0.536358738318164
+lora3k4_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.12266602673124377,0.10328670412660174,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.04809890588405046,0.01603296862801682,0.026102282678955424,0.08129554702790781,0.22544722587316474,0.08569393477543832,0.15963811868704922
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.298362678421569,1.1336378493238222,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.5425205785887645,0.1808401928629215,0.7403191122727105,0.7632501319574989,2.221229274551765,0.8813444458685531,1.7153809109745848
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.6009295795197345,0.5577912230337596,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.4019805717029762,0.13399352390099206,0.27286431394885097,0.09017638575493277,1.5102378399947085,0.29193995931346856,0.9099191997260003
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7219425933785271,0.6644876751251361,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.15040777970452915,0.050135926568176385,0.1266338898986088,0.5390417705554955,0.9587279945366025,0.60632893939002,0.8375562473670342
+lora3k4_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.3714886053058244,0.21222950671825858,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3010105156337208,0.09518788290642799,0.5211441694364045,0.04357552931343755,0.8236421594265816,0.1561586541774515,0.5868185564341972
+lora3k4_raw_s13,HC,ifng_response_log2fc_high_vs_other,-1.680653958465692,-1.6862081844129233,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.4936587520023817,0.15610860432037338,0.9282477594067191,-2.3517581685933595,-1.098122598307585,-2.0337961559034556,-1.3275117610279286
+lora3k4_raw_s13,HC,ifng_response_c1q_high_minus_other,0.11726652724228866,0.10127311042431884,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04208774327209332,0.013309313031624269,0.05498773848664912,0.0691525493628789,0.18645066220372042,0.08715876943587633,0.14737428504870098
+lora3k4_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.08704750766741105,0.0708257001927577,0.6,0.2,0.193359375,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.1818363734997419,0.05750171017242673,0.1882543880372042,-0.22947598137348646,0.4183940921504788,-0.043030397872290474,0.2171254132071126
+lora3k4_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-1.2622551339456063,-1.2168530790720449,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.3239072918026266,0.10242847928330866,0.4094627678197269,-1.8544417805776532,-0.7679447358019676,-1.4939644520308706,-1.030545815860342
+lora3k4_raw_s13,HC,proinflammatory_c1q_high_minus_other,0.025071891976256134,0.015380200121548268,0.9,0.8,0.01953125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.02906154927197377,0.009190068803264527,0.04133396562265195,-0.015612584433362775,0.07862097104254653,0.004282512006342956,0.04586127194616931
+lora3k4_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.3963754064003884,0.3743204067110885,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.12354554674913959,0.039068532249809225,0.174951013779856,0.2400659783397957,0.6210655489539708,0.30799624633146977,0.484754566469307
+lora3k4_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.2746799919911047,-1.2884404664953664,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.327652097296132,0.10361269075868744,0.22669513621357207,-1.8108736292559042,-0.8485427875978885,-1.5090681825476648,-1.0402918014345446
+lora3k4_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.12712813936313258,0.11212999525483874,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.042312187759105266,0.013380288610346854,0.05981551923193079,0.060965884101868706,0.2039843897832304,0.09685982364292921,0.15739645508333594
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.7995048782553198,1.813561187194348,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.49766870557358955,0.15737666298002767,0.673214180696105,1.062509525668246,2.613642785424349,1.443494132837771,2.1555156236728683
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.3161709188302968,0.41859032284302233,0.6,0.2,0.275390625,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.7602968130280102,0.24042696269356917,1.024364148734379,-1.007340778741566,1.2522362052644294,-0.22771265695677745,0.860054494617371
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7740804644074621,0.7850664660704924,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.16887915508495166,0.053404277939325374,0.22771996167325503,0.5227881370658098,1.065564544245056,0.653271594542951,0.8948893342719733

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3k4_raw_s13,BDU1,BD,generated,792,15,0.01893939393939394,0.3399720080935075,0.2438755475327172,0.09609646056079033,0.1791544521848792,0.1593651066859728,0.019789345498906374,0.5519001193979408,0.4297705065128649,0.1221296128850759,0.32319684518451675,0.05509176945387369,0.26589744178680436,1.2774482055088667,-0.7339622908754225,-0.721514195044098,-0.6906053051663918,0.639911573935309,1.959950498292688,1.2080164978686292,0.7519340004240589,-0.5980567482986312
+lora3k4_raw_s13,BDU2,BD,generated,600,5,0.008333333333333333,0.3591964542630209,0.2619084584190024,0.09728799584401848,0.18132241603842664,0.1634633997811483,0.017859016257278343,0.5506080317681628,0.4545807015620423,0.09602733020612048,0.33520945375913175,0.17517795094506852,0.4586148384113477,1.6338902452894377,-1.412532851742157,-1.0109983820586643,-0.9269318973465934,0.5577912230337596,2.002660524292158,1.2432841457327126,0.7593763785594452,-0.9162106193795512
+lora3k4_raw_s13,BDU3,BD,generated,873,17,0.019473081328751432,0.3346003328685692,0.2885701622809448,0.04603017058762443,0.19518854532582489,0.17644816467997904,0.01874038064584585,0.5247157567010828,0.443420209673175,0.08129554702790781,0.2661097105588459,0.060807490186024445,0.12884478446374747,0.8239633830074456,-0.6464749750384285,-0.6458896382039676,-0.6496521491704766,0.34593629463028214,1.7656416178269576,1.226599847271462,0.5390417705554955,-0.5192981730514078
+lora3k4_raw_s13,BDV1,BD,generated,900,25,0.027777777777777776,0.39264740809948573,0.28932953243710835,0.10331787566237738,0.2067579322426576,0.1773464477319912,0.029411484510666386,0.5505533113424561,0.4472666072158544,0.10328670412660174,0.378456960689734,0.14234818459447307,0.21431885870788359,0.9082397064863296,-0.24401665854319182,-0.3551411839770392,-0.33065178874363793,0.6023221828347995,1.9032615711300993,1.2652957529229911,0.6379658182071082,-0.38885614054407114
+lora3k4_raw_s13,BDV2,BD,generated,800,11,0.01375,0.35521312572638286,0.27958204359672467,0.07563108212965819,0.18347755683956934,0.16893025092016808,0.01454730591940126,0.5546185429358969,0.45009723974479915,0.1045213031910977,0.1524718033600086,-0.08807148304045508,0.3349768596955465,0.8935711330167272,-1.1671977777301523,-1.012506420719572,-0.7533974134290495,0.09017638575493277,1.898175592813834,1.301674336637429,0.5965012561764049,-0.7028912089618494
+lora3k4_raw_s13,BDV3,BD,generated,804,12,0.014925373134328358,0.3750190513879392,0.25755166299875354,0.11746738838918563,0.17613560940905137,0.16042073285719582,0.01571487655185555,0.6229786024132237,0.4430057278626618,0.17997287455056188,0.07704169597294296,0.030136569280022788,0.46411274064461744,2.0300341766522267,-1.0312460238787668,-0.7619533242574126,-0.4344046245937959,1.5102378399947085,2.1442386018380866,1.185510607301484,0.9587279945366025,-0.6212499293505452
+lora3k4_raw_s13,BDV4,BD,generated,678,12,0.017699115044247787,0.3210819332024958,0.2624064993633584,0.05867543383913737,0.16173192470186798,0.15880921742193688,0.0029227072799311027,0.5533002008806084,0.45152863078672945,0.10177157009387894,0.14269595726606452,0.13994205847582453,0.17995082522122782,1.1336378493238222,-1.1827398862400118,-0.7631800473869975,-0.8095629173371968,0.45054611766463687,1.9398330276250129,1.2753453524998768,0.6644876751251361,-0.697694111090454
+lora3k4_raw_s13,BDV5,BD,generated,937,16,0.017075773745997867,0.3646521493167565,0.28168084173492264,0.08297130758183385,0.19775275472903414,0.1893635995949849,0.008389155134049253,0.5240053533376405,0.43446328071085577,0.08954207262678476,0.44593484249515214,0.0969747633554951,0.07616894209818954,0.7632501319574989,-0.49700303788085914,-0.6525975109350285,-0.7150264683495531,0.367047259986458,1.8584101108330615,1.2256676221722251,0.6327424886608364,-0.5456252138603832
+lora3k4_raw_s13,BDV6,BD,generated,1027,5,0.004868549172346641,0.39125453623826506,0.24266221029126736,0.1485923259469977,0.213682955584302,0.16278207203285586,0.05090088355144615,0.6269853659958222,0.4015381401226575,0.22544722587316474,0.15226392108007522,0.04961695649009867,0.6864696457517693,2.221229274551765,-1.714369200994842,-1.228753936782877,-0.8454835622546066,0.8443973378427236,2.076146724247319,1.1194407660856631,0.9567059581616559,-0.94670997941542
+lora3k4_raw_s13,HC1,HC,generated,842,5,0.0059382422802850355,0.32855204711608577,0.22778102248560875,0.10077102463047702,0.16310102198212045,0.15377029307525775,0.009330728906862706,0.5111151647258076,0.41236621189567285,0.0987489528301348,0.04357552931343755,-0.02147285973319081,0.536663362816978,2.613642785424349,-2.208165892594752,-1.536410770259548,-1.3387775770674784,0.9487231415630589,1.9509547417511341,1.1321237244028997,0.8188310173482345,-1.1804528168421624
+lora3k4_raw_s13,HC10,HC,generated,618,6,0.009708737864077669,0.34747915233376997,0.2480995841758627,0.09937956815790727,0.2075656782600305,0.15984983373611922,0.04771584452391128,0.5739696974152118,0.4257391557294457,0.14823054168576605,0.09238357919520591,-0.002018599158486767,0.30622174673071145,1.062509525668246,-1.672582944984738,-1.104018771312604,-1.116598498149349,-0.08657823773359563,1.8743916549488258,1.158080614596768,0.7163110403520578,-0.917342594730876
+lora3k4_raw_s13,HC2,HC,generated,664,7,0.010542168674698794,0.3092184792176788,0.2400659298547999,0.0691525493628789,0.17849585550317237,0.1597847208048963,0.018711134698276066,0.47351664221209794,0.41255075811022923,0.060965884101868706,0.20443408530000096,0.11806043241772043,0.3440573796362617,1.6693510789706034,-1.6998334238411086,-1.1795369876809012,-1.2913041930060367,0.28049851393130887,1.7370715970744404,1.1615833871623238,0.5754882099121166,-0.9821434313316278
+lora3k4_raw_s13,HC3,HC,generated,467,5,0.010706638115631691,0.3988263164695183,0.2479454281089563,0.15088088836056202,0.1949506869470865,0.1540035986834321,0.040947088263654396,0.601554383440243,0.43613350021414243,0.1654208832261006,0.7506218282445966,0.18950664712434573,0.6210655489539708,1.9577712954180924,-1.155801278901987,-1.0716015995026522,-0.8698642805762746,0.5566821317547358,1.9250337543542588,1.1737318395615086,0.7513019147927502,-0.9560839817750583
+lora3k4_raw_s13,HC4,HC,generated,770,9,0.011688311688311689,0.3735040726082997,0.25169756030966955,0.12180651229863015,0.1664308848480557,0.16328820803541647,0.0031426768126392446,0.5480553107759516,0.4363102552473095,0.11174505552864211,0.5478684031609421,0.2871791518236397,0.43438960260712406,2.1339056433739643,-1.098122598307585,-0.7679447358019676,-0.8485427875978885,1.2522362052644294,2.055812204121686,1.1723569487734757,0.8834552553482105,-0.8668529835031421
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_D/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_D/sample.csv

@@ -0,0 +1,20 @@
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