Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/dataset/server_1/dependency/2927095b6a41fbcd/pairs_primary.csv

@@ -0,0 +1,66 @@
+sc_sample,Batch,Donor,Subject,Timepoint,Class,Age,Gender,Ward,Status,symptom_type,hospital_days,day_from_symptom_onset_to_hospitalization,number_of_days_hospitalized,computed_ethnicity,ever_admitted_to_icu,severity,days_of_symptoms_onset,condition,outcome,DDimer,CRP,material_type,sample_bsi_id,sample_alt_id,sample_label,batch,days_since_hospitalized,days_since_onset,severity.outcome,PC1,PC1_cat,cond_group,onset_group,intubation_vent,PC1_onset_group,sample_name,Sorted,BatchSort,n_cells_object,n_sorted_dropped,n_unsorted,n_unsorted_hto_singlet,n_unsorted_hto_doublet,n_unsorted_hto_negative,n_unsorted_not_demuxlet_singlet,n_selected,hashtags,kind,bulk_column,table_file,column_key,column_correction,subject,column_timepoint,bulk_gsm,bulk_title,geo_batch,geo_timepoint_characteristic,geo_timepoint,timepoint,timepoint_conflict,kind_bulk,id_match,sample_id
+B1_AA220014_HC,B1,AA220014,AA220014,HC,HC,67,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220014_HC,N,B1UnSort,2665,2212,453,428,25,0,0,428,HTO1,HC,AA220014,B1_bulkRNAseq_countmtx.csv,AA220014,,AA220014,,GSM4929233,Batch 1 bulkRNAseq AA220014,B1,Healthy Control,HC,HC,,HC,exact_subject_timepoint,AA220014_HC
+B1_AA220534_HC,B1,AA220534,AA220534,HC,HC,47,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220534_HC,N,B1UnSort,2000,1630,370,353,17,0,0,353,HTO2,HC,AA220534,B1_bulkRNAseq_countmtx.csv,AA220534,,AA220534,,GSM4929234,Batch1 bulkRNAseq AA220534,B1,Healthy Control,HC,HC,,HC,exact_subject_timepoint,AA220534_HC
+B1_AA220907_HC,B1,AA220907,AA220907,HC,HC,32,Female,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220907_HC,N,B1UnSort,1820,1418,402,384,18,0,0,384,HTO2,HC,AA220907,B1_bulkRNAseq_countmtx.csv,AA220907,,AA220907,,GSM4929235,Batch 1 bulk RNAseq AA220907,B1,Healthy Control,HC,HC,,HC,exact_subject_timepoint,AA220907_HC
+B1_HGR0000071_T0,B1,HGR0000071,HGR0000071,T0,COVID,71,Female,Infectious_Diseases,Deceased,phenotype,,6,,EUR,FALSE,Critical,8,COVID19,deceased,5250,309,PBMC,AA500490 0001,BS-EQ-0005:T0:PBMC,BS-EQ-0005,Batch1,2,8,Critical-Deceased,3.56953465111741,PC1_high,Critical,early,,PC1_high_early,HGR0000071_T0,N,B1UnSort,2510,2143,367,347,20,0,0,347,HTO1,COVID,HGR0000071_T0,B1_bulkRNAseq_countmtx.csv,HGR0000071_T0,,HGR0000071,T0,GSM4929237,Batch 1 bulk RNAseq HGR0000071,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000071_T0
+B1_HGR0000074_T0,B1,HGR0000074,HGR0000074,T0,COVID,52,Male,Infectious_Diseases,Alive,Comorbid,19,9,19,EUR,FALSE,Critical,18,COVID19,alive,2087,1.1,PBMC,AA500491 0001,BS-EQ-0026:T0:PBMC,BS-EQ-0026,Batch1,9,18,Critical-Alive,-0.626780069068832,PC1_low,Critical,mid,,PC1_low_mid,HGR0000074_T0,N,B1UnSort,1796,1433,363,347,16,0,0,347,HTO2,COVID,PHGR0000074_T0,B1_bulkRNAseq_countmtx.csv,HGR0000074_T0,leading 'P' removed (typo; GEO title and HTO metadata name the subject without it),HGR0000074,T0,GSM4929238,Batch 1 bulk RNAseq HGR0000074,B1,Timepoint 0,T0,T0,,COVID,subject_timepoint; bulk column name corrected,HGR0000074_T0
+B1_HGR0000078_T0,B1,HGR0000078,HGR0000078,T0,COVID,40,Female,Tropical_Diseases,Alive,phenotype,21,5,21,EUR,TRUE,Critical,18,COVID19,alive,2242,4.9,PBMC,AA500492 0001,BS-EQ-0003:T0:PBMC,BS-EQ-0003,Batch1,13,18,Critical-Alive,-0.0923749337182958,PC1_high,Critical,mid,TRUE,PC1_high_mid,HGR0000078_T0,N,B1UnSort,899,691,208,186,22,0,0,186,HTO2,COVID,HGR0000078_T0,B1_bulkRNAseq_countmtx.csv,HGR0000078_T0,,HGR0000078,T0,GSM4929239,Batch 1 bulk RNAseq HGR0000078_T0,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000078_T0
+B1_HGR0000078_T1,B1,HGR0000078,HGR0000078,T1,COVID,40,Female,Tropical_Diseases,Alive,phenotype,21,5,21,EUR,TRUE,Critical,23,COVID19,alive,2242,4.9,PBMC,AA500517 0001,BS-EQ-0003:T1:PBMC,BS-EQ-0003,Batch1,18,23,Critical-Alive,-0.0923749337182958,PC1_high,Critical,mid,TRUE,PC1_high_mid,HGR0000078_T1,N,B1UnSort,1125,908,217,204,13,0,0,204,HTO1,COVID,HGR0000078_T1,B1_bulkRNAseq_countmtx.csv,HGR0000078_T1,,HGR0000078,T1,GSM4929240,Batch 1 bulk RNAseq HGR0000078_T1,B1,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000078_T1
+B1_HGR0000079_T0,B1,HGR0000079,HGR0000079,T0,COVID,37,Female,Infectious_Diseases,Alive,phenotype,27,24,27,EUR,FALSE,Critical,30,COVID19-Negative,alive,854,96.2,PBMC,AA500493 0001,BS-EQ-0006:T0:PBMC,BS-EQ-0006,Batch1,6,30,,,,Critical,late,,NA_late,HGR0000079_T0,N,B1UnSort,1405,1282,123,119,4,0,0,119,HTO2,COVID,HGR0000079_T0,B1_bulkRNAseq_countmtx.csv,HGR0000079_T0,,HGR0000079,T0,GSM4929241,Batch 1 bulk RNAseq HGR0000079_T0,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000079_T0
+B1_HGR0000079_T1,B1,HGR0000079,HGR0000079,T1,COVID,37,Female,Infectious_Diseases,Alive,phenotype,27,24,27,EUR,FALSE,Critical,36,COVID19-Negative,alive,854,96.2,PBMC,AA500518 0001,BS-EQ-0006:T1:PBMC,BS-EQ-0006,Batch1,12,36,,,,Critical,late,,NA_late,HGR0000079_T1,N,B1UnSort,955,799,156,145,11,0,0,145,HTO1,COVID,HGR0000079_T1,B1_bulkRNAseq_countmtx.csv,HGR0000079_T1,,HGR0000079,T1,GSM4929242,Batch 1 bulk RNAseq HGR0000079_T1,B1,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000079_T1
+B1_HGR0000083_T0,B1,HGR0000083,HGR0000083,T0,COVID,55,Male,Tropical_Diseases,Alive,phenotype,11,5,11,EUR,FALSE,Moderate,6,COVID19,alive,589,124.9,PBMC,AA500494 0001,BS-EQ-0002:T0:PBMC,BS-EQ-0002,Batch1,1,6,Moderate-Alive,-1.9508583519753,PC1_low,Moderate,early,,PC1_low_early,HGR0000083_T0,N,B1UnSort,2240,2063,177,165,12,0,0,165,HTO2,COVID,HGR0000083_T0,B1_bulkRNAseq_countmtx.csv,HGR0000083_T0,,HGR0000083,T0,GSM4929243,Batch 1 bulk RNAseq HGR0000083_T0,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000083_T0
+B1_HGR0000083_T1,B1,HGR0000083,HGR0000083,T1,COVID,55,Male,Tropical_Diseases,Alive,phenotype,11,5,11,EUR,FALSE,Moderate,13,COVID19,alive,589,124.9,PBMC,AA500519 0001,BS-EQ-0002:T1:PBMC,BS-EQ-0002,Batch1,8,13,Moderate-Alive,-1.9508583519753,PC1_low,Moderate,early,,PC1_low_early,HGR0000083_T1,N,B1UnSort,1680,1365,315,304,11,0,0,304,HTO1,COVID,HGR0000083_T1,B1_bulkRNAseq_countmtx.csv,HGR0000083_T1,,HGR0000083,T1,GSM4929244,Batch 1 bulk RNAseq HGR0000083_T1,B1,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000083_T1
+B1_HGR0000089_T1,B1,HGR0000089,HGR0000089,T1,COVID,78,Male,Infectious_Diseases,Alive,phenotype,14,12,14,EUR,FALSE,Critical,20,COVID19-Negative,alive,217,19.1,PBMC,AA500520 0001,BS-EQ-0027:T1:PBMC,BS-EQ-0027,Batch1,8,20,Critical-Alive,0.0516202369908761,PC1_high,Critical,mid,,PC1_high_mid,HGR0000089_T1,N,B1UnSort,2476,2102,374,365,9,0,0,365,HTO1,COVID,HGR0000089_T1,B1_bulkRNAseq_countmtx.csv,HGR0000089_T1,,HGR0000089,T1,GSM4929245,Batch 1 bulk RNAseq HGR0000089,B1,Timepoint 0,T0,T1,column name T1 vs GEO characteristic 'Timepoint 0',COVID,subject_timepoint; GEO bulk timepoint characteristic differs,HGR0000089_T1
+B1_HGR0000091_T0,B1,HGR0000091,HGR0000091,T0,COVID,35,Male,Infectious_Diseases,Alive,phenotype,5,17,5,EUR,FALSE,Moderate,20,COVID19,alive,511,73.3,PBMC,AA500496 0001,BS-EQ-0004:T0:PBMC,BS-EQ-0004,Batch1,3,20,Moderate-Alive,-1.41813091808461,PC1_low,Moderate,mid,,PC1_low_mid,HGR0000091_T0,N,B1UnSort,1764,1383,381,368,13,0,0,368,HTO1,COVID,HGR0000091_T0,B1_bulkRNAseq_countmtx.csv,HGR0000091_T0,,HGR0000091,T0,GSM4929246,Batch 1 bulk RNAseq HGR0000091,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000091_T0
+B1_HGR0000093_T0,B1,HGR0000093,HGR0000093,T0,COVID,70,Male,Infectious_Diseases,Alive,phenotype,20,10,20,EUR,FALSE,Critical,11,COVID19,alive,327,1.5,PBMC,AA500498 0001,BS-EQ-0008:T0:PBMC,BS-EQ-0008,Batch1,1,11,Critical-Alive,-0.348888393393188,PC1_low,Critical,early,,PC1_low_early,HGR0000093_T0,N,B1UnSort,1773,1288,485,457,28,0,0,457,HTO2,COVID,HGR0000093_T0,B1_bulkRNAseq_countmtx.csv,HGR0000093_T0,,HGR0000093,T0,GSM4929247,Batch 1 bulk RNAseq HGR0000093_T0,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000093_T0
+B1_HGR0000093_T1,B1,HGR0000093,HGR0000093,T1,COVID,70,Male,Infectious_Diseases,Alive,phenotype,20,10,20,EUR,FALSE,Critical,17,COVID19,alive,327,1.5,PBMC,AA500521 0001,BS-EQ-0008:T1:PBMC,BS-EQ-0008,Batch1,7,17,Critical-Alive,-0.348888393393188,PC1_low,Critical,mid,,PC1_low_mid,HGR0000093_T1,N,B1UnSort,981,812,169,154,15,0,0,154,HTO1,COVID,HGR0000093_T1,B1_bulkRNAseq_countmtx.csv,HGR0000093_T1,,HGR0000093,T1,GSM4929248,Batch 1 bulk RNAseq HGR0000093_T1,B1,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000093_T1
+B1_HGR0000098_T0,B1,HGR0000098,HGR0000098,T0,COVID,60,Male,Infectious_Diseases,Alive,phenotype,42,,42,EUR,TRUE,Critical,,COVID19,alive,347,5.6,PBMC,AA500500 0001,BS-EQ-0009:T0:PBMC,BS-EQ-0009,Batch1,1,,Critical-Alive,2.95435018758758,PC1_high,Critical,,TRUE,PC1_high_NA,HGR0000098_T0,N,B1UnSort,2552,2128,424,407,17,0,0,407,HTO1,COVID,HGR0000098_T0,B1_bulkRNAseq_countmtx.csv,HGR0000098_T0,,HGR0000098,T0,GSM4929249,Batch 1 bulk RNAseq HGR0000098,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000098_T0
+B1_HGR0000110_T0,B1,HGR0000110,HGR0000110,T0,COVID,73,Male,Infectious_Diseases,Alive,phenotype,,3,,EUR,FALSE,Critical,3,COVID19,deceased,537,216,PBMC,AA500503 0001,BS-EQ-0013:T0:PBMC,BS-EQ-0013,Batch1,0,3,Critical-Deceased,3.68918247500143,PC1_high,Critical,early,,PC1_high_early,HGR0000110_T0,N,B1UnSort,561,427,134,129,5,0,0,129,HTO2,COVID,HGR0000110_T0,B1_bulkRNAseq_countmtx.csv,HGR0000110_T0,,HGR0000110,T0,GSM4929250,Batch 1 bulk RNAseq HGR0000110,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000110_T0
+B1_HGR0000136_T0,B1,HGR0000136,HGR0000136,T0,COVID,57,Female,Infectious_Diseases,Alive,Comorbid,3,16,3,EUR,FALSE,Moderate,17,COVID19,alive,193,10,PBMC,AA500507 0001,BS-EQ-0019:T0:PBMC,BS-EQ-0019,Batch1,1,17,Moderate-Alive,-2.91073693427368,PC1_low,Moderate,mid,,PC1_low_mid,HGR0000136_T0,N,B1UnSort,1956,1626,330,320,10,0,0,320,HTO1,COVID,HGR0000136_T0,B1_bulkRNAseq_countmtx.csv,HGR0000136_T0,,HGR0000136,T0,GSM4929251,Batch 1 bulk RNAseq HGR0000136,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000136_T0
+B1_HGR0000137_T0,B1,HGR0000137,HGR0000137,T0,COVID,79,Female,Infectious_Diseases,Alive,phenotype,3,3,3,EUR,FALSE,Severe,4,COVID19,alive,363,36.5,PBMC,AA500508 0001,BS-EQ-0020:T0:PBMC,BS-EQ-0020,Batch1,1,4,Severe-Alive,-1.2015610057303,PC1_low,Severe,early,,PC1_low_early,HGR0000137_T0,N,B1UnSort,1980,1635,345,329,16,0,0,329,HTO1,COVID,HGR0000137_T0,B1_bulkRNAseq_countmtx.csv,HGR0000137_T0,,HGR0000137,T0,GSM4929252,Batch 1 bulk RNAseq HGR0000137,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000137_T0
+B1_HGR0000141_T0,B1,HGR0000141,HGR0000141,T0,COVID,76,Male,Infectious_Diseases,Deceased,phenotype,,14,,EUR,FALSE,Critical,20,COVID19,deceased,0,294.8,PBMC,AA500509 0001,BS-EQ-0022:T0:PBMC,BS-EQ-0022,Batch1,6,20,Critical-Deceased,3.27623326424634,PC1_high,Critical,mid,,PC1_high_mid,HGR0000141_T0,N,B1UnSort,1807,1534,273,258,15,0,0,258,HTO2,COVID,HGR0000141_T0,B1_bulkRNAseq_countmtx.csv,HGR0000141_T0,,HGR0000141,T0,GSM4929253,Batch 1 bulk RNAseq HGR0000141,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000141_T0
+B1_HGR0000143_T0,B1,HGR0000143,HGR0000143,T0,COVID,54,Female,Infectious_Diseases,Alive,phenotype,34,7,34,EAS,TRUE,Critical,8,COVID19,alive,0,2.3,PBMC,AA500511 0001,BS-EQ-0024:T0:PBMC,BS-EQ-0024,Batch1,1,8,Critical-Alive,1.67405631685952,PC1_high,Critical,early,TRUE,PC1_high_early,HGR0000143_T0,N,B1UnSort,1636,1336,300,289,11,0,0,289,HTO2,COVID,HGR0000143_T0,B1_bulkRNAseq_countmtx.csv,HGR0000143_T0,,HGR0000143,T0,GSM4929254,Batch 1 bulk RNAseq HGR0000143,B1,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000143_T0
+B1_IM000040_HC,B1,IM000040,IM000040,HC,HC,37,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,IM000040_HC,N,B1UnSort,2352,1958,394,379,15,0,0,379,HTO1,HC,IM000040,B1_bulkRNAseq_countmtx.csv,IM000040,,IM000040,,GSM4929255,Batch 1 bulk RNAseq IM000040,B1,Healthy Control,HC,HC,,HC,exact_subject_timepoint,IM000040_HC
+B2_HGR0000042_T0,B2,HGR0000042,HGR0000042,T0,COVID,53,Male,Infectious_Diseases,Alive,phenotype,15,5,15,EUR,FALSE,Critical,12,COVID19,alive,0,33,PBMC,AA500488 0001,BS-EQ-0015:T0:PBMC,BS-EQ-0015,Batch2,7,12,Critical-Alive,-0.0144850947759859,PC1_high,Critical,early,,PC1_high_early,HGR0000042_T0,N,B2UnSort,4551,1141,3410,2306,5,1099,0,2306,HTO3,COVID,HGR0000042_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000042_T0,,HGR0000042,T0,GSM4929261,Batch 2 bulk RNAseq HGR0000042_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000042_T0
+B2_HGR0000042_T1,B2,HGR0000042,HGR0000042,T1,COVID,53,Male,Infectious_Diseases,Alive,phenotype,15,5,15,EUR,FALSE,Critical,18,COVID19,alive,0,33,PBMC,AA500530 0001,BS-EQ-0015:T1:PBMC,BS-EQ-0015,Batch2,13,18,Critical-Alive,-0.0144850947759859,PC1_high,Critical,mid,,PC1_high_mid,HGR0000042_T1,N,B2UnSort,6641,1944,4697,4663,2,32,0,4663,HTO2,COVID,HGR0000042_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000042_T1,,HGR0000042,T1,GSM4929262,Batch 2 bulk RNAseq HGR0000042_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000042_T1
+B2_HGR0000069_T0,B2,HGR0000069,HGR0000069,T0,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,13,COVID19,alive,593,0.8,PBMC,AA500514 0001,BS-EQ-0001:T0:PBMC,BS-EQ-0001,Batch2,1,13,Critical-Alive,1.04716869546426,PC1_high,Severe,early,,PC1_high_early,HGR0000069_T0,N,B2UnSort,6909,2351,4558,4524,3,31,0,4524,HTO2,COVID,HGR0000069_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T0,,HGR0000069,T0,GSM4929263,Batch 2 bulk RNAseq HGR0000069_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000069_T0
+B2_HGR0000069_T1,B2,HGR0000069,HGR0000069,T1,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,20,COVID19,alive,593,0.8,PBMC,AA500516 0001,BS-EQ-0001:T1:PBMC,BS-EQ-0001,Batch2,8,20,Critical-Alive,1.04716869546426,PC1_high,Severe,mid,,PC1_high_mid,HGR0000069_T1,N,B2UnSort,6981,1534,5447,4670,3,774,0,4670,HTO1,COVID,HGR0000069_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T1,,HGR0000069,T1,GSM4929264,Batch 2 bulk RNAseq HGR0000069_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000069_T1
+B2_HGR0000069_T2,B2,HGR0000069,HGR0000069,T2,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,33,COVID19,alive,593,0.8,PBMC,AA500552 0001,BS-EQ-0001:T2:PBMC,BS-EQ-0001,Batch2,21,33,Critical-Alive,1.04716869546426,PC1_high,Severe,late,,PC1_high_late,HGR0000069_T2,N,B2UnSort,5944,1658,4286,2413,7,1866,0,2413,HTO3,COVID,HGR0000069_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T2,,HGR0000069,T2,GSM4929265,Batch 2 bulk RNAseq HGR0000069_T2,B2,Timepoint 2,T2,T2,,COVID,exact_subject_timepoint,HGR0000069_T2
+B2_HGR0000092_T0,B2,HGR0000092,HGR0000092,T0,COVID,45,Male,Infectious_Diseases,Alive,phenotype,15,9,15,EUR,FALSE,Critical,11,COVID19,alive,871,179.7,PBMC,AA500497 0001,BS-EQ-0012:T0:PBMC,BS-EQ-0012,Batch2,2,11,Critical-Alive,-0.52272790656358,PC1_low,Critical,early,,PC1_low_early,HGR0000092_T0,N,B2UnSort,7743,2134,5609,5402,9,198,0,5402,HTO1,COVID,HGR0000092_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000092_T0,,HGR0000092,T0,GSM4929266,Batch 2 bulk RNAseq HGR0000092_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000092_T0
+B2_HGR0000092_T1,B2,HGR0000092,HGR0000092,T1,COVID,45,Male,Infectious_Diseases,Alive,phenotype,15,9,15,EUR,FALSE,Critical,18,COVID19,alive,871,179.7,PBMC,AA500531 0001,BS-EQ-0012:T1:PBMC,BS-EQ-0012,Batch2,9,18,Critical-Alive,-0.52272790656358,PC1_low,Critical,mid,,PC1_low_mid,HGR0000092_T1,N,B2UnSort,6429,1938,4491,3015,9,1467,0,3015,HTO3,COVID,HGR0000092_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000092_T1,,HGR0000092,T1,GSM4929267,Batch 2 bulk RNAseq HGR0000092_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000092_T1
+B2_HGR0000094_T0,B2,HGR0000094,HGR0000094,T0,COVID,61,Male,Infectious_Diseases,Alive,Comorbid,14,5,14,EUR,FALSE,Critical,6,COVID19-Negative,alive,382,0,PBMC,AA500499 0001,BS-EQ-0007:T0:PBMC,BS-EQ-0007,Batch2,1,6,Critical-Alive,0.726261730620933,PC1_high,Critical,early,,PC1_high_early,HGR0000094_T0,N,B2UnSort,4591,1418,3173,3148,2,23,0,3148,HTO2,COVID,HGR0000094_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000094_T0,,HGR0000094,T0,GSM4929268,Batch 2 bulk RNAseq HGR0000094_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000094_T0
+B2_HGR0000094_T1,B2,HGR0000094,HGR0000094,T1,COVID,61,Male,Infectious_Diseases,Alive,Comorbid,14,5,14,EUR,FALSE,Critical,13,COVID19-Negative,alive,382,0,PBMC,AA500532 0001,BS-EQ-0007:T1:PBMC,BS-EQ-0007,Batch2,8,13,Critical-Alive,0.726261730620933,PC1_high,Critical,early,,PC1_high_early,HGR0000094_T1,N,B2UnSort,2554,671,1883,967,2,914,0,967,HTO3,COVID,HGR0000094_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000094_T1,,HGR0000094,T1,GSM4929269,Batch 2 bulk RNAseq HGR0000094_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000094_T1
+B2_HGR0000115_T1,B2,HGR0000115,HGR0000115,T1,COVID,24,Male,Infectious_Diseases,Alive,phenotype,9,3,9,EUR,FALSE,Severe,11,COVID19,alive,0,14.8,PBMC,AA500535 0001,BS-EQ-0032:T1:PBMC,BS-EQ-0032,Batch2,8,11,Severe-Alive,-2.76779602430212,PC1_low,Severe,early,,PC1_low_early,HGR0000115_T1,N,B2UnSort,8138,2823,5315,5285,1,29,0,5285,HTO2,COVID,HGR0000115_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000115_T1,,HGR0000115,T1,GSM4929270,Batch 2 bulk RNAseq HGR0000115_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000115_T1
+B2_HGR0000124_T0,B2,HGR0000124,HGR0000124,T0,COVID,79,Male,Infectious_Diseases,Alive,phenotype,44,8,44,EUR,FALSE,Critical,36,COVID19,alive,0,0,PBMC,AA500504 0001,BS-EQ-0021:T0:PBMC,BS-EQ-0021,Batch2,28,36,,,,Critical,late,,NA_late,HGR0000124_T0,N,B2UnSort,14056,4842,9214,9135,6,73,0,9135,HTO2,COVID,HGR0000124_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000124_T0,,HGR0000124,T0,GSM4929271,Batch 2 bulk RNAseq HGR0000124_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000124_T0
+B2_HGR0000124_T1,B2,HGR0000124,HGR0000124,T1,COVID,79,Male,Infectious_Diseases,Alive,phenotype,44,8,44,EUR,FALSE,Critical,49,COVID19,alive,0,0,PBMC,AA500537 0001,BS-EQ-0021:T1:PBMC,BS-EQ-0021,Batch2,41,49,,,,Critical,late,,NA_late,HGR0000124_T1,N,B2UnSort,5969,1928,4041,2617,1,1423,0,2617,HTO3,COVID,HGR0000124_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000124_T1,,HGR0000124,T1,GSM4929272,Batch 2 bulk RNAseq HGR0000124_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000124_T1
+B2_HGR0000144_T0,B2,HGR0000144,HGR0000144,T0,COVID,84,Female,Infectious_Diseases,Alive,phenotype,25,12,25,EUR,FALSE,Severe,15,COVID19,alive,872,179,PBMC,AA500512 0001,BS-EQ-0028:T0:PBMC,BS-EQ-0028,Batch2,3,15,Severe-Alive,-0.158291992685593,PC1_high,Severe,early,,PC1_high_early,HGR0000144_T0,N,B2UnSort,5288,999,4289,2283,5,2001,0,2283,HTO3,COVID,HGR0000144_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000144_T0,,HGR0000144,T0,GSM4929273,Batch 2 bulk RNAseq HGR0000144_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000144_T0
+B2_HGR0000144_T2,B2,HGR0000144,HGR0000144,T2,COVID,84,Female,Infectious_Diseases,Alive,phenotype,25,12,25,EUR,FALSE,Severe,28,COVID19,alive,872,179,PBMC,AA500559 0001,BS-EQ-0028:T2:PBMC,BS-EQ-0028,Batch2,16,28,Severe-Alive,-0.158291992685593,PC1_high,Severe,late,,PC1_high_late,HGR0000144_T2,N,B2UnSort,8949,1691,7258,6434,8,816,0,6434,HTO1,COVID,HGR0000144_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000144_T2,,HGR0000144,T2,GSM4929274,Batch 2 bulk RNAseq HGR0000144_T2,B2,Timepoint 2,T2,T2,,COVID,exact_subject_timepoint,HGR0000144_T2
+B2_HGR0000391_T0,B2,HGR0000391,HGR0000391,T0,COVID,66,Male,Infectious_Diseases,Alive,Comorbid,9,5,9,EUR,FALSE,Critical,6,COVID19,alive,220,2.2,PBMC,AA500523 0001,BS-EQ-0029:T0:PBMC,BS-EQ-0029,Batch2,1,6,Critical-Alive,-1.30858460669219,PC1_low,Critical,early,,PC1_low_early,HGR0000391_T0,N,B2UnSort,9292,2382,6910,6846,5,59,0,6846,HTO1,COVID,HGR0000391_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000391_T0,,HGR0000391,T0,GSM4929275,Batch 2 bulk RNAseq HGR0000391_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000391_T0
+B2_HGR0000395_T0,B2,HGR0000395,HGR0000395,T0,COVID,50,Male,Tropical_Diseases,Alive,phenotype,8,12,8,EUR,FALSE,Severe,14,COVID19,alive,229,12.1,PBMC,AA500525 0001,BS-EQ-0034:T0:PBMC,BS-EQ-0034,Batch2,2,14,Severe-Alive,-2.51313825051465,PC1_low,Severe,early,,PC1_low_early,HGR0000395_T0,N,B2UnSort,5628,1557,4071,2871,3,1197,0,2871,HTO3,COVID,HGR0000395_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000395_T0,,HGR0000395,T0,GSM4929276,Batch 2 bulk RNAseq HGR0000395_T0,B2,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000395_T0
+B2_HGR0000418_T1,B2,HGR0000418,HGR0000418,T1,COVID,50,Male,Infectious_Diseases,Alive,phenotype,14,21,14,EUR,FALSE,Critical,32,COVID19,alive,0,95.4,PBMC,AA500546 0001,BS-EQ-0036:T1:PBMC,BS-EQ-0036,Batch2,11,32,,,,Critical,late,,NA_late,HGR0000418_T1,N,B2UnSort,8474,1828,6646,6313,5,328,0,6313,HTO1,COVID,HGR0000418_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000418_T1,,HGR0000418,T1,GSM4929277,Batch 2 bulk RNAseq HGR0000418_T1,B2,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000418_T1
+B2_SHD2_HC,B2,SHD2,SHD2,HC,HC,53,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD2_HC,N,B2UnSort,8603,2885,5718,3538,1,2179,0,3538,HTO3,HC,SHD2,B2_B3_bulkRNAseq_countmtx.csv,SHD2,,SHD2,,GSM4929278,Batch 2 bulk RNAseq SHD2,B2,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD2_HC
+B2_SHD4_HC,B2,SHD4,SHD4,HC,HC,63,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD4_HC,N,B2UnSort,10177,2890,7287,7240,7,40,0,7240,HTO1,HC,SHD4,B2_B3_bulkRNAseq_countmtx.csv,SHD4,,SHD4,,GSM4929279,Batch 2 bulk RNAseq SHD4,B2,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD4_HC
+B2_SHD7_HC,B2,SHD7,SHD7,HC,HC,77,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD7_HC,N,B2UnSort,9502,2989,6513,6488,2,23,0,6488,HTO2,HC,SHD7,B2_B3_bulkRNAseq_countmtx.csv,SHD7,,SHD7,,GSM4929280,Batch 2 bulk RNAseq SHD7,B2,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD7_HC
+B3_HGR0000051_T0,B3,HGR0000051,HGR0000051,T0,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,10,COVID19,alive,618,276.8,PBMC,AA500489 0001,BS-EQ-0014:T0:PBMC,BS-EQ-0014,Batch3,3,10,Critical-Alive,0.0824050089906214,PC1_high,Critical,early,,PC1_high_early,HGR0000051_T0,N,B3UnSort,4378,1153,3225,3158,67,0,0,3158,HTO3,COVID,HGR0000051_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T0,,HGR0000051,T0,GSM4929283,Batch 3 bulk RNAseq HGR0000051_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000051_T0
+B3_HGR0000051_T1,B3,HGR0000051,HGR0000051,T1,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,14,COVID19,alive,618,276.8,PBMC,AA500515 0001,BS-EQ-0014:T1:PBMC,BS-EQ-0014,Batch3,7,14,Critical-Alive,0.0824050089906214,PC1_high,Critical,early,,PC1_high_early,HGR0000051_T1,N,B3UnSort,6772,1715,5057,5057,0,0,0,5057,HTO2,COVID,HGR0000051_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T1,,HGR0000051,T1,GSM4929284,Batch 3 bulk RNAseq HGR0000051_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000051_T1
+B3_HGR0000051_T2,B3,HGR0000051,HGR0000051,T2,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,17,COVID19,alive,618,276.8,PBMC,AA500551 0001,BS-EQ-0014:T2:PBMC,BS-EQ-0014,Batch3,10,17,Critical-Alive,0.0824050089906214,PC1_high,Critical,mid,,PC1_high_mid,HGR0000051_T2,N,B3UnSort,6060,1773,4287,2179,71,2037,0,2179,HTO5,COVID,HGR0000051_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T2,,HGR0000051,T2,GSM4929285,Batch 3 bulk RNAseq HGR0000051_T2,B3,Timepoint 2,T2,T2,,COVID,exact_subject_timepoint,HGR0000051_T2
+B3_HGR0000051_T3,B3,HGR0000051,HGR0000051,T3,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,20,COVID19,alive,618,276.8,PBMC,AA500563 0001,BS-EQ-0014:T3:PBMC,BS-EQ-0014,Batch3,13,20,Critical-Alive,0.0824050089906214,PC1_high,Critical,mid,,PC1_high_mid,HGR0000051_T3,N,B3UnSort,7400,2207,5193,5119,74,0,0,5119,HTO1,COVID,HGR0000051_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T3,,HGR0000051,T3,GSM4929286,Batch 3 bulk RNAseq HGR0000051_T3,B3,Timepoint 3,T3,T3,,COVID,exact_subject_timepoint,HGR0000051_T3
+B3_HGR0000101_T0,B3,HGR0000101,HGR0000101,T0,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,8,COVID19,alive,5211,68,PBMC,AA500501 0001,BS-EQ-0011:T0:PBMC,BS-EQ-0011,Batch3,1,8,Critical-Alive,2.38816634675649,PC1_high,Critical,early,,PC1_high_early,HGR0000101_T0,N,B3UnSort,2904,890,2014,977,23,1014,0,977,HTO5,COVID,HGR0000101_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T0,,HGR0000101,T0,GSM4929287,Batch 3 bulk RNAseq HGR0000101_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000101_T0
+B3_HGR0000101_T1,B3,HGR0000101,HGR0000101,T1,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,14,COVID19,alive,5211,68,PBMC,AA500522 0001,BS-EQ-0011:T1:PBMC,BS-EQ-0011,Batch3,7,14,Critical-Alive,2.38816634675649,PC1_high,Critical,early,,PC1_high_early,HGR0000101_T1,N,B3UnSort,7872,2801,5071,5010,61,0,0,5010,HTO1,COVID,HGR0000101_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T1,,HGR0000101,T1,GSM4929288,Batch 3 bulk RNAseq HGR0000101_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000101_T1
+B3_HGR0000101_T3,B3,HGR0000101,HGR0000101,T3,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,27,COVID19,alive,5211,68,PBMC,AA500564 0001,BS-EQ-0011:T3:PBMC,BS-EQ-0011,Batch3,20,27,Critical-Alive,2.38816634675649,PC1_high,Critical,late,,PC1_high_late,HGR0000101_T3,N,B3UnSort,6075,1999,4076,4001,75,0,0,4001,HTO3,COVID,HGR0000101_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T3,,HGR0000101,T3,GSM4929289,Batch 3 bulk RNAseq HGR0000101_T3,B3,Timepoint 3,T3,T3,,COVID,exact_subject_timepoint,HGR0000101_T3
+B3_HGR0000102_T0,B3,HGR0000102,HGR0000102,T0,COVID,58,Male,Infectious_Diseases,Alive,phenotype,24,7,24,EUR,FALSE,Critical,10,COVID19,alive,208,4.9,PBMC,AA500502 0001,BS-EQ-0010:T0:PBMC,BS-EQ-0010,Batch3,3,10,Critical-Alive,-1.57139207217568,PC1_low,Critical,early,,PC1_low_early,HGR0000102_T0,N,B3UnSort,7555,2860,4695,4626,69,0,0,4626,HTO3,COVID,HGR0000102_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000102_T0,,HGR0000102,T0,GSM4929290,Batch 3 bulk RNAseq HGR0000102_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000102_T0
+B3_HGR0000102_T1,B3,HGR0000102,HGR0000102,T1,COVID,58,Male,Infectious_Diseases,Alive,phenotype,24,7,24,EUR,FALSE,Critical,17,COVID19,alive,208,4.9,PBMC,AA500533 0001,BS-EQ-0010:T1:PBMC,BS-EQ-0010,Batch3,10,17,Critical-Alive,-1.57139207217568,PC1_low,Critical,mid,,PC1_low_mid,HGR0000102_T1,N,B3UnSort,9292,3508,5784,5690,94,0,0,5690,HTO1,COVID,HGR0000102_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000102_T1,,HGR0000102,T1,GSM4929291,Batch 3 bulk RNAseq HGR0000102_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000102_T1
+B3_HGR0000134_T0,B3,HGR0000134,HGR0000134,T0,COVID,53,Male,Tropical_Diseases,Alive,Comorbid,8,14,8,EUR,FALSE,Critical,16,COVID19,alive,0,19.3,PBMC,AA500505 0001,BS-EQ-0017:T0:PBMC,BS-EQ-0017,Batch3,2,16,Critical-Alive,-1.92544770891706,PC1_low,Critical,early,,PC1_low_early,HGR0000134_T0,N,B3UnSort,8210,2121,6089,6089,0,0,0,6089,HTO2,COVID,HGR0000134_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000134_T0,,HGR0000134,T0,GSM4929292,Batch 3 bulk RNAseq HGR0000134_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000134_T0
+B3_HGR0000134_T1,B3,HGR0000134,HGR0000134,T1,COVID,53,Male,Tropical_Diseases,Alive,Comorbid,8,14,8,EUR,FALSE,Critical,22,COVID19,alive,0,19.3,PBMC,AA500538 0001,BS-EQ-0017:T1:PBMC,BS-EQ-0017,Batch3,8,22,Critical-Alive,-1.92544770891706,PC1_low,Critical,mid,,PC1_low_mid,HGR0000134_T1,N,B3UnSort,9372,2918,6454,2783,84,3587,0,2783,HTO5,COVID,HGR0000134_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000134_T1,,HGR0000134,T1,GSM4929293,Batch 3 bulk RNAseq HGR0000134_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000134_T1
+B3_HGR0000135_T0,B3,HGR0000135,HGR0000135,T0,COVID,59,Male,Infectious_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,10,COVID19,alive,0,30.7,PBMC,AA500506 0001,BS-EQ-0018:T0:PBMC,BS-EQ-0018,Batch3,3,10,Critical-Alive,0.75305315128394,PC1_high,Critical,early,,PC1_high_early,HGR0000135_T0,N,B3UnSort,8841,2772,6069,6069,0,0,0,6069,HTO2,COVID,HGR0000135_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000135_T0,,HGR0000135,T0,GSM4929294,Batch 3 bulk RNAseq HGR0000135_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000135_T0
+B3_HGR0000135_T1,B3,HGR0000135,HGR0000135,T1,COVID,59,Male,Infectious_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,16,COVID19,alive,0,30.7,PBMC,AA500539 0001,BS-EQ-0018:T1:PBMC,BS-EQ-0018,Batch3,9,16,Critical-Alive,0.75305315128394,PC1_high,Critical,early,,PC1_high_early,HGR0000135_T1,N,B3UnSort,7509,2380,5129,5019,110,0,0,5019,HTO3,COVID,HGR0000135_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000135_T1,,HGR0000135,T1,GSM4929295,Batch 3 bulk RNAseq HGR0000135_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000135_T1
+B3_HGR0000142_T0,B3,HGR0000142,HGR0000142,T0,COVID,49,Male,Infectious_Diseases,Alive,Comorbid,9,12,9,EUR,FALSE,Critical,12,COVID19,alive,291,16.1,PBMC,AA500510 0001,BS-EQ-0023:T0:PBMC,BS-EQ-0023,Batch3,0,12,Critical-Alive,-0.617734576041256,PC1_low,Critical,early,,PC1_low_early,HGR0000142_T0,N,B3UnSort,7893,2761,5132,2866,80,2186,0,2866,HTO5,COVID,HGR0000142_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000142_T0,,HGR0000142,T0,GSM4929296,Batch 3 bulk RNAseq HGR0000142_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000142_T0
+B3_HGR0000392_T0,B3,HGR0000392,HGR0000392,T0,COVID,52,Male,Infectious_Diseases,Alive,phenotype,14,0,14,UNKNOWN,FALSE,Critical,2,COVID19,alive,0,0,PBMC,AA500524 0001,BS-EQ-0033:T0:PBMC,BS-EQ-0033,Batch3,2,2,Critical-Alive,-1.84274100791149,PC1_low,Critical,early,,PC1_low_early,HGR0000392_T0,N,B3UnSort,8061,2650,5411,5355,56,0,0,5355,HTO1,COVID,HGR0000392_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000392_T0,,HGR0000392,T0,GSM4929297,Batch 3 bulk RNAseq HGR0000392_T0,B3,Timepoint 0,T0,T0,,COVID,exact_subject_timepoint,HGR0000392_T0
+B3_HGR0000392_T3,B3,HGR0000392,HGR0000392,T3,COVID,52,Male,Infectious_Diseases,Alive,phenotype,14,0,14,UNKNOWN,FALSE,Critical,13,COVID19,alive,0,0,PBMC,AA500565 0001,BS-EQ-0033:T3:PBMC,BS-EQ-0033,Batch3,13,13,Critical-Alive,-1.84274100791149,PC1_low,Critical,early,,PC1_low_early,HGR0000392_T3,N,B3UnSort,7958,3106,4852,1445,62,3345,0,1445,HTO5,COVID,HGR0000392_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000392_T3,,HGR0000392,T3,GSM4929298,Batch 3 bulk RNAseq HGR0000392_T3,B3,Timepoint 3,T3,T3,,COVID,exact_subject_timepoint,HGR0000392_T3
+B3_HGR0000429_T1,B3,HGR0000429,HGR0000429,T1,COVID,54,Male,Infectious_Diseases,Alive,phenotype,13,16,13,,FALSE,Severe,26,COVID19,alive,0,124.8,PBMC,AA500549 0001,BS-EQ-0043:T1:PBMC,BS-EQ-0043,Batch3,10,26,Severe-Alive,-1.18921567127169,PC1_low,Severe,late,,PC1_low_late,HGR0000429_T1,N,B3UnSort,10783,3377,7406,7406,0,0,0,7406,HTO2,COVID,HGR0000429_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000429_T1,,HGR0000429,T1,GSM4929299,Batch 3 bulk RNAseq HGR0000429_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000429_T1
+B3_HGR0000429_T2,B3,HGR0000429,HGR0000429,T2,COVID,54,Male,Infectious_Diseases,Alive,phenotype,13,16,13,,FALSE,Severe,28,COVID19,alive,0,124.8,PBMC,AA500562 0001,BS-EQ-0043:T2:PBMC,BS-EQ-0043,Batch3,12,28,Severe-Alive,-1.18921567127169,PC1_low,Severe,late,,PC1_low_late,HGR0000429_T2,N,B3UnSort,8031,2940,5091,5000,91,0,0,5000,HTO3,COVID,HGR0000429_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000429_T2,,HGR0000429,T2,GSM4929300,Batch 3 bulk RNAseq HGR0000429_T2,B3,Timepoint 2,T2,T2,,COVID,exact_subject_timepoint,HGR0000429_T2
+B3_HGR0000430_T1,B3,HGR0000430,HGR0000430,T1,COVID,77,Female,Tropical_Diseases,Alive,Comorbid,,7,,,FALSE,Critical,20,COVID19,deceased,0,63.5,PBMC,AA500550 0001,BS-EQ-0044:T1:PBMC,BS-EQ-0044,Batch3,13,20,Critical-Deceased,2.76885345317608,PC1_high,Critical,mid,,PC1_high_mid,HGR0000430_T1,N,B3UnSort,5262,1814,3448,1941,73,1434,0,1941,HTO5,COVID,HGR0000430_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000430_T1,,HGR0000430,T1,GSM4929301,Batch 3 bulk RNAseq HGR0000430_T1,B3,Timepoint 1,T1,T1,,COVID,exact_subject_timepoint,HGR0000430_T1
+B3_SHD1_HC,B3,SHD1,SHD1,HC,HC,51,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD1_HC,N,B3UnSort,9623,3373,6250,6250,0,0,0,6250,HTO2,HC,SHD1,B2_B3_bulkRNAseq_countmtx.csv,SHD1,,SHD1,,GSM4929302,Batch 3 bulk RNAseq SHD1,B3,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD1_HC
+B3_SHD3_HC,B3,SHD3,SHD3,HC,HC,58,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD3_HC,N,B3UnSort,9440,4087,5353,5254,99,0,0,5254,HTO3,HC,SHD3,B2_B3_bulkRNAseq_countmtx.csv,SHD3,,SHD3,,GSM4929303,Batch 3 bulk RNAseq SHD3,B3,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD3_HC
+B3_SHD5_HC,B3,SHD5,SHD5,HC,HC,73,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD5_HC,N,B3UnSort,11962,5358,6604,6524,80,0,0,6524,HTO1,HC,SHD5,B2_B3_bulkRNAseq_countmtx.csv,SHD5,,SHD5,,GSM4929304,Batch 3 bulk RNAseq SHD5,B3,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD5_HC
+B3_SHD6_HC,B3,SHD6,SHD6,HC,HC,74,Female,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD6_HC,N,B3UnSort,9127,3531,5596,2554,70,2972,0,2554,HTO5,HC,SHD6,B2_B3_bulkRNAseq_countmtx.csv,SHD6,,SHD6,,GSM4929305,Batch 3 bulk RNAseq SHD6,B3,Healthy Control,HC,HC,,HC,exact_subject_timepoint,SHD6_HC

paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/dataset/server_1/dependency/3d2d8d3c278bb125/bulk_count_columns.csv

@@ -0,0 +1,74 @@
+bulk_column,table_file,column_key,column_correction,subject,column_timepoint,bulk_gsm,bulk_title,geo_batch,geo_timepoint_characteristic,geo_timepoint,timepoint,timepoint_conflict,kind,paired,unpaired_reason
+HGR0000091_T0,B1_bulkRNAseq_countmtx.csv,HGR0000091_T0,,HGR0000091,T0,GSM4929246,Batch 1 bulk RNAseq HGR0000091,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000071_T0,B1_bulkRNAseq_countmtx.csv,HGR0000071_T0,,HGR0000071,T0,GSM4929237,Batch 1 bulk RNAseq HGR0000071,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000098_T0,B1_bulkRNAseq_countmtx.csv,HGR0000098_T0,,HGR0000098,T0,GSM4929249,Batch 1 bulk RNAseq HGR0000098,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000136_T0,B1_bulkRNAseq_countmtx.csv,HGR0000136_T0,,HGR0000136,T0,GSM4929251,Batch 1 bulk RNAseq HGR0000136,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000137_T0,B1_bulkRNAseq_countmtx.csv,HGR0000137_T0,,HGR0000137,T0,GSM4929252,Batch 1 bulk RNAseq HGR0000137,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000089_T1,B1_bulkRNAseq_countmtx.csv,HGR0000089_T1,,HGR0000089,T1,GSM4929245,Batch 1 bulk RNAseq HGR0000089,B1,Timepoint 0,T0,T1,column name T1 vs GEO characteristic 'Timepoint 0',COVID,True,
+HGR0000093_T1,B1_bulkRNAseq_countmtx.csv,HGR0000093_T1,,HGR0000093,T1,GSM4929248,Batch 1 bulk RNAseq HGR0000093_T1,B1,Timepoint 1,T1,T1,,COVID,True,
+HGR0000083_T1,B1_bulkRNAseq_countmtx.csv,HGR0000083_T1,,HGR0000083,T1,GSM4929244,Batch 1 bulk RNAseq HGR0000083_T1,B1,Timepoint 1,T1,T1,,COVID,True,
+HGR0000079_T1,B1_bulkRNAseq_countmtx.csv,HGR0000079_T1,,HGR0000079,T1,GSM4929242,Batch 1 bulk RNAseq HGR0000079_T1,B1,Timepoint 1,T1,T1,,COVID,True,
+HGR0000078_T1,B1_bulkRNAseq_countmtx.csv,HGR0000078_T1,,HGR0000078,T1,GSM4929240,Batch 1 bulk RNAseq HGR0000078_T1,B1,Timepoint 1,T1,T1,,COVID,True,
+IM000040,B1_bulkRNAseq_countmtx.csv,IM000040,,IM000040,,GSM4929255,Batch 1 bulk RNAseq IM000040,B1,Healthy Control,HC,HC,,HC,True,
+AA220014,B1_bulkRNAseq_countmtx.csv,AA220014,,AA220014,,GSM4929233,Batch 1 bulkRNAseq AA220014,B1,Healthy Control,HC,HC,,HC,True,
+HGR0000141_T0,B1_bulkRNAseq_countmtx.csv,HGR0000141_T0,,HGR0000141,T0,GSM4929253,Batch 1 bulk RNAseq HGR0000141,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000143_T0,B1_bulkRNAseq_countmtx.csv,HGR0000143_T0,,HGR0000143,T0,GSM4929254,Batch 1 bulk RNAseq HGR0000143,B1,Timepoint 0,T0,T0,,COVID,True,
+PHGR0000074_T0,B1_bulkRNAseq_countmtx.csv,HGR0000074_T0,leading 'P' removed (typo; GEO title and HTO metadata name the subject without it),HGR0000074,T0,GSM4929238,Batch 1 bulk RNAseq HGR0000074,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000110_T0,B1_bulkRNAseq_countmtx.csv,HGR0000110_T0,,HGR0000110,T0,GSM4929250,Batch 1 bulk RNAseq HGR0000110,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000093_T0,B1_bulkRNAseq_countmtx.csv,HGR0000093_T0,,HGR0000093,T0,GSM4929247,Batch 1 bulk RNAseq HGR0000093_T0,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000083_T0,B1_bulkRNAseq_countmtx.csv,HGR0000083_T0,,HGR0000083,T0,GSM4929243,Batch 1 bulk RNAseq HGR0000083_T0,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000079_T0,B1_bulkRNAseq_countmtx.csv,HGR0000079_T0,,HGR0000079,T0,GSM4929241,Batch 1 bulk RNAseq HGR0000079_T0,B1,Timepoint 0,T0,T0,,COVID,True,
+HGR0000078_T0,B1_bulkRNAseq_countmtx.csv,HGR0000078_T0,,HGR0000078,T0,GSM4929239,Batch 1 bulk RNAseq HGR0000078_T0,B1,Timepoint 0,T0,T0,,COVID,True,
+AA220534,B1_bulkRNAseq_countmtx.csv,AA220534,,AA220534,,GSM4929234,Batch1 bulkRNAseq AA220534,B1,Healthy Control,HC,HC,,HC,True,
+AA220907,B1_bulkRNAseq_countmtx.csv,AA220907,,AA220907,,GSM4929235,Batch 1 bulk RNAseq AA220907,B1,Healthy Control,HC,HC,,HC,True,
+CHI-014,B1_bulkRNAseq_countmtx.csv,CHI-014,,CHI-014,,GSM4929236,Batch 1 bulk RNAseq CHI-014,B1,Technical Control,Technical Control,Technical Control,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+CHI014_B2,B2_B3_bulkRNAseq_countmtx.csv,CHI014_B2,,CHI014_B2,,GSM4929256,Batch 2 bulk RNAseq CHI014_B2,B2,Healthy Control,HC,HC,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+CHI014_B3,B2_B3_bulkRNAseq_countmtx.csv,CHI014_B3,,CHI014_B3,,GSM4929282,Batch 3 bulk RNAseq CHI014_B3,B3,Technical Control,Technical Control,Technical Control,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+HD_ML_bc,B2_B3_bulkRNAseq_countmtx.csv,HD_ML_bc,,HD_ML_bc,,GSM4929257,Batch 2 bulk RNAseq HD_ML_bc,B2,Technical test sample,Technical test sample,Technical test sample,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+HD_ML_PBMC,B2_B3_bulkRNAseq_countmtx.csv,HD_ML_PBMC,,HD_ML_PBMC,,GSM4929258,Batch 2 bulk RNAseq HD_ML_PBMC,B2,Healthy Control,HC,HC,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+HD_VO_bc,B2_B3_bulkRNAseq_countmtx.csv,HD_VO_bc,,HD_VO_bc,,GSM4929259,Batch 2 bulk RNAseq HD_VO_bc,B2,Technical test sample,Technical test sample,Technical test sample,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+HD_VO_PBMC,B2_B3_bulkRNAseq_countmtx.csv,HD_VO_PBMC,,HD_VO_PBMC,,GSM4929260,Batch 2 bulk RNAseq HD_VO_PBMC,B2,Healthy Control,HC,HC,,technical_control,False,technical control column (CHI014 / HD buffy-coat test); excluded by task rule
+HGR0000042_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000042_T0,,HGR0000042,T0,GSM4929261,Batch 2 bulk RNAseq HGR0000042_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000042_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000042_T1,,HGR0000042,T1,GSM4929262,Batch 2 bulk RNAseq HGR0000042_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000051_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T0,,HGR0000051,T0,GSM4929283,Batch 3 bulk RNAseq HGR0000051_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000051_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T1,,HGR0000051,T1,GSM4929284,Batch 3 bulk RNAseq HGR0000051_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000051_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T2,,HGR0000051,T2,GSM4929285,Batch 3 bulk RNAseq HGR0000051_T2,B3,Timepoint 2,T2,T2,,COVID,True,
+HGR0000051_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000051_T3,,HGR0000051,T3,GSM4929286,Batch 3 bulk RNAseq HGR0000051_T3,B3,Timepoint 3,T3,T3,,COVID,True,
+HGR0000069_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T0,,HGR0000069,T0,GSM4929263,Batch 2 bulk RNAseq HGR0000069_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000069_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T1,,HGR0000069,T1,GSM4929264,Batch 2 bulk RNAseq HGR0000069_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000069_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000069_T2,,HGR0000069,T2,GSM4929265,Batch 2 bulk RNAseq HGR0000069_T2,B2,Timepoint 2,T2,T2,,COVID,True,
+HGR0000092_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000092_T0,,HGR0000092,T0,GSM4929266,Batch 2 bulk RNAseq HGR0000092_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000092_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000092_T1,,HGR0000092,T1,GSM4929267,Batch 2 bulk RNAseq HGR0000092_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000094_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000094_T0,,HGR0000094,T0,GSM4929268,Batch 2 bulk RNAseq HGR0000094_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000094_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000094_T1,,HGR0000094,T1,GSM4929269,Batch 2 bulk RNAseq HGR0000094_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000101_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T0,,HGR0000101,T0,GSM4929287,Batch 3 bulk RNAseq HGR0000101_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000101_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T1,,HGR0000101,T1,GSM4929288,Batch 3 bulk RNAseq HGR0000101_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000101_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000101_T3,,HGR0000101,T3,GSM4929289,Batch 3 bulk RNAseq HGR0000101_T3,B3,Timepoint 3,T3,T3,,COVID,True,
+HGR0000102_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000102_T0,,HGR0000102,T0,GSM4929290,Batch 3 bulk RNAseq HGR0000102_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000102_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000102_T1,,HGR0000102,T1,GSM4929291,Batch 3 bulk RNAseq HGR0000102_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000115_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000115_T1,,HGR0000115,T1,GSM4929270,Batch 2 bulk RNAseq HGR0000115_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000124_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000124_T0,,HGR0000124,T0,GSM4929271,Batch 2 bulk RNAseq HGR0000124_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000124_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000124_T1,,HGR0000124,T1,GSM4929272,Batch 2 bulk RNAseq HGR0000124_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000134_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000134_T0,,HGR0000134,T0,GSM4929292,Batch 3 bulk RNAseq HGR0000134_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000134_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000134_T1,,HGR0000134,T1,GSM4929293,Batch 3 bulk RNAseq HGR0000134_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000135_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000135_T0,,HGR0000135,T0,GSM4929294,Batch 3 bulk RNAseq HGR0000135_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000135_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000135_T1,,HGR0000135,T1,GSM4929295,Batch 3 bulk RNAseq HGR0000135_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000142_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000142_T0,,HGR0000142,T0,GSM4929296,Batch 3 bulk RNAseq HGR0000142_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000144_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000144_T0,,HGR0000144,T0,GSM4929273,Batch 2 bulk RNAseq HGR0000144_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000144_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000144_T2,,HGR0000144,T2,GSM4929274,Batch 2 bulk RNAseq HGR0000144_T2,B2,Timepoint 2,T2,T2,,COVID,True,
+HGR0000391_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000391_T0,,HGR0000391,T0,GSM4929275,Batch 2 bulk RNAseq HGR0000391_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000392_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000392_T0,,HGR0000392,T0,GSM4929297,Batch 3 bulk RNAseq HGR0000392_T0,B3,Timepoint 0,T0,T0,,COVID,True,
+HGR0000392_T3,B2_B3_bulkRNAseq_countmtx.csv,HGR0000392_T3,,HGR0000392,T3,GSM4929298,Batch 3 bulk RNAseq HGR0000392_T3,B3,Timepoint 3,T3,T3,,COVID,True,
+HGR0000395_T0,B2_B3_bulkRNAseq_countmtx.csv,HGR0000395_T0,,HGR0000395,T0,GSM4929276,Batch 2 bulk RNAseq HGR0000395_T0,B2,Timepoint 0,T0,T0,,COVID,True,
+HGR0000418_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000418_T1,,HGR0000418,T1,GSM4929277,Batch 2 bulk RNAseq HGR0000418_T1,B2,Timepoint 1,T1,T1,,COVID,True,
+HGR0000429_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000429_T1,,HGR0000429,T1,GSM4929299,Batch 3 bulk RNAseq HGR0000429_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+HGR0000429_T2,B2_B3_bulkRNAseq_countmtx.csv,HGR0000429_T2,,HGR0000429,T2,GSM4929300,Batch 3 bulk RNAseq HGR0000429_T2,B3,Timepoint 2,T2,T2,,COVID,True,
+HGR0000430_T1,B2_B3_bulkRNAseq_countmtx.csv,HGR0000430_T1,,HGR0000430,T1,GSM4929301,Batch 3 bulk RNAseq HGR0000430_T1,B3,Timepoint 1,T1,T1,,COVID,True,
+SHD1,B2_B3_bulkRNAseq_countmtx.csv,SHD1,,SHD1,,GSM4929302,Batch 3 bulk RNAseq SHD1,B3,Healthy Control,HC,HC,,HC,True,
+SHD2,B2_B3_bulkRNAseq_countmtx.csv,SHD2,,SHD2,,GSM4929278,Batch 2 bulk RNAseq SHD2,B2,Healthy Control,HC,HC,,HC,True,
+SHD3,B2_B3_bulkRNAseq_countmtx.csv,SHD3,,SHD3,,GSM4929303,Batch 3 bulk RNAseq SHD3,B3,Healthy Control,HC,HC,,HC,True,
+SHD4,B2_B3_bulkRNAseq_countmtx.csv,SHD4,,SHD4,,GSM4929279,Batch 2 bulk RNAseq SHD4,B2,Healthy Control,HC,HC,,HC,True,
+SHD5,B2_B3_bulkRNAseq_countmtx.csv,SHD5,,SHD5,,GSM4929304,Batch 3 bulk RNAseq SHD5,B3,Healthy Control,HC,HC,,HC,True,
+SHD6,B2_B3_bulkRNAseq_countmtx.csv,SHD6,,SHD6,,GSM4929305,Batch 3 bulk RNAseq SHD6,B3,Healthy Control,HC,HC,,HC,True,
+SHD7,B2_B3_bulkRNAseq_countmtx.csv,SHD7,,SHD7,,GSM4929280,Batch 2 bulk RNAseq SHD7,B2,Healthy Control,HC,HC,,HC,True,
+SHD8,B2_B3_bulkRNAseq_countmtx.csv,SHD8,,SHD8,,GSM4929281,Batch 2 bulk RNAseq SHD8,B2,Healthy Control (excluded due to abnormal lymphoma-like B cells found upon analysis),HC,HC,,author_excluded,False,GEO: 'Healthy Control (excluded due to abnormal lymphoma-like B cells found upon analysis)'; the author Seurat object holds 0 cells of this subject

paper-releases/pbisc-diffusion/updates/20261002T124820Z-crosscohort-liu-default/diffusion/dataset/server_1/dependency/fb76b84fa119597e/sc_samples.csv

@@ -0,0 +1,71 @@
+sc_sample,Batch,Donor,Subject,Timepoint,Class,Age,Gender,Ward,Status,symptom_type,hospital_days,day_from_symptom_onset_to_hospitalization,number_of_days_hospitalized,computed_ethnicity,ever_admitted_to_icu,severity,days_of_symptoms_onset,condition,outcome,DDimer,CRP,material_type,sample_bsi_id,sample_alt_id,sample_label,batch,days_since_hospitalized,days_since_onset,severity.outcome,PC1,PC1_cat,cond_group,onset_group,intubation_vent,PC1_onset_group,sample_name,Sorted,BatchSort,n_cells_object,n_sorted_dropped,n_unsorted,n_unsorted_hto_singlet,n_unsorted_hto_doublet,n_unsorted_hto_negative,n_unsorted_not_demuxlet_singlet,n_selected,hashtags,kind
+B1_AA220014_HC,B1,AA220014,AA220014,HC,HC,67,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220014_HC,N,B1UnSort,2665,2212,453,428,25,0,0,428,HTO1,HC
+B1_AA220534_HC,B1,AA220534,AA220534,HC,HC,47,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220534_HC,N,B1UnSort,2000,1630,370,353,17,0,0,353,HTO2,HC
+B1_AA220907_HC,B1,AA220907,AA220907,HC,HC,32,Female,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,AA220907_HC,N,B1UnSort,1820,1418,402,384,18,0,0,384,HTO2,HC
+B1_CHI014_HC,B1,CHI014,CHI014,HC,HC,,na,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,CHI014_HC,N,B1UnSort,2744,2164,580,545,35,0,0,545,HTO1|HTO2,technical_control
+B1_HGR0000071_T0,B1,HGR0000071,HGR0000071,T0,COVID,71,Female,Infectious_Diseases,Deceased,phenotype,,6,,EUR,FALSE,Critical,8,COVID19,deceased,5250,309,PBMC,AA500490 0001,BS-EQ-0005:T0:PBMC,BS-EQ-0005,Batch1,2,8,Critical-Deceased,3.56953465111741,PC1_high,Critical,early,,PC1_high_early,HGR0000071_T0,N,B1UnSort,2510,2143,367,347,20,0,0,347,HTO1,COVID
+B1_HGR0000074_T0,B1,HGR0000074,HGR0000074,T0,COVID,52,Male,Infectious_Diseases,Alive,Comorbid,19,9,19,EUR,FALSE,Critical,18,COVID19,alive,2087,1.1,PBMC,AA500491 0001,BS-EQ-0026:T0:PBMC,BS-EQ-0026,Batch1,9,18,Critical-Alive,-0.626780069068832,PC1_low,Critical,mid,,PC1_low_mid,HGR0000074_T0,N,B1UnSort,1796,1433,363,347,16,0,0,347,HTO2,COVID
+B1_HGR0000078_T0,B1,HGR0000078,HGR0000078,T0,COVID,40,Female,Tropical_Diseases,Alive,phenotype,21,5,21,EUR,TRUE,Critical,18,COVID19,alive,2242,4.9,PBMC,AA500492 0001,BS-EQ-0003:T0:PBMC,BS-EQ-0003,Batch1,13,18,Critical-Alive,-0.0923749337182958,PC1_high,Critical,mid,TRUE,PC1_high_mid,HGR0000078_T0,N,B1UnSort,899,691,208,186,22,0,0,186,HTO2,COVID
+B1_HGR0000078_T1,B1,HGR0000078,HGR0000078,T1,COVID,40,Female,Tropical_Diseases,Alive,phenotype,21,5,21,EUR,TRUE,Critical,23,COVID19,alive,2242,4.9,PBMC,AA500517 0001,BS-EQ-0003:T1:PBMC,BS-EQ-0003,Batch1,18,23,Critical-Alive,-0.0923749337182958,PC1_high,Critical,mid,TRUE,PC1_high_mid,HGR0000078_T1,N,B1UnSort,1125,908,217,204,13,0,0,204,HTO1,COVID
+B1_HGR0000079_T0,B1,HGR0000079,HGR0000079,T0,COVID,37,Female,Infectious_Diseases,Alive,phenotype,27,24,27,EUR,FALSE,Critical,30,COVID19-Negative,alive,854,96.2,PBMC,AA500493 0001,BS-EQ-0006:T0:PBMC,BS-EQ-0006,Batch1,6,30,,,,Critical,late,,NA_late,HGR0000079_T0,N,B1UnSort,1405,1282,123,119,4,0,0,119,HTO2,COVID
+B1_HGR0000079_T1,B1,HGR0000079,HGR0000079,T1,COVID,37,Female,Infectious_Diseases,Alive,phenotype,27,24,27,EUR,FALSE,Critical,36,COVID19-Negative,alive,854,96.2,PBMC,AA500518 0001,BS-EQ-0006:T1:PBMC,BS-EQ-0006,Batch1,12,36,,,,Critical,late,,NA_late,HGR0000079_T1,N,B1UnSort,955,799,156,145,11,0,0,145,HTO1,COVID
+B1_HGR0000083_T0,B1,HGR0000083,HGR0000083,T0,COVID,55,Male,Tropical_Diseases,Alive,phenotype,11,5,11,EUR,FALSE,Moderate,6,COVID19,alive,589,124.9,PBMC,AA500494 0001,BS-EQ-0002:T0:PBMC,BS-EQ-0002,Batch1,1,6,Moderate-Alive,-1.9508583519753,PC1_low,Moderate,early,,PC1_low_early,HGR0000083_T0,N,B1UnSort,2240,2063,177,165,12,0,0,165,HTO2,COVID
+B1_HGR0000083_T1,B1,HGR0000083,HGR0000083,T1,COVID,55,Male,Tropical_Diseases,Alive,phenotype,11,5,11,EUR,FALSE,Moderate,13,COVID19,alive,589,124.9,PBMC,AA500519 0001,BS-EQ-0002:T1:PBMC,BS-EQ-0002,Batch1,8,13,Moderate-Alive,-1.9508583519753,PC1_low,Moderate,early,,PC1_low_early,HGR0000083_T1,N,B1UnSort,1680,1365,315,304,11,0,0,304,HTO1,COVID
+B1_HGR0000089_T1,B1,HGR0000089,HGR0000089,T1,COVID,78,Male,Infectious_Diseases,Alive,phenotype,14,12,14,EUR,FALSE,Critical,20,COVID19-Negative,alive,217,19.1,PBMC,AA500520 0001,BS-EQ-0027:T1:PBMC,BS-EQ-0027,Batch1,8,20,Critical-Alive,0.0516202369908761,PC1_high,Critical,mid,,PC1_high_mid,HGR0000089_T1,N,B1UnSort,2476,2102,374,365,9,0,0,365,HTO1,COVID
+B1_HGR0000091_T0,B1,HGR0000091,HGR0000091,T0,COVID,35,Male,Infectious_Diseases,Alive,phenotype,5,17,5,EUR,FALSE,Moderate,20,COVID19,alive,511,73.3,PBMC,AA500496 0001,BS-EQ-0004:T0:PBMC,BS-EQ-0004,Batch1,3,20,Moderate-Alive,-1.41813091808461,PC1_low,Moderate,mid,,PC1_low_mid,HGR0000091_T0,N,B1UnSort,1764,1383,381,368,13,0,0,368,HTO1,COVID
+B1_HGR0000093_T0,B1,HGR0000093,HGR0000093,T0,COVID,70,Male,Infectious_Diseases,Alive,phenotype,20,10,20,EUR,FALSE,Critical,11,COVID19,alive,327,1.5,PBMC,AA500498 0001,BS-EQ-0008:T0:PBMC,BS-EQ-0008,Batch1,1,11,Critical-Alive,-0.348888393393188,PC1_low,Critical,early,,PC1_low_early,HGR0000093_T0,N,B1UnSort,1773,1288,485,457,28,0,0,457,HTO2,COVID
+B1_HGR0000093_T1,B1,HGR0000093,HGR0000093,T1,COVID,70,Male,Infectious_Diseases,Alive,phenotype,20,10,20,EUR,FALSE,Critical,17,COVID19,alive,327,1.5,PBMC,AA500521 0001,BS-EQ-0008:T1:PBMC,BS-EQ-0008,Batch1,7,17,Critical-Alive,-0.348888393393188,PC1_low,Critical,mid,,PC1_low_mid,HGR0000093_T1,N,B1UnSort,981,812,169,154,15,0,0,154,HTO1,COVID
+B1_HGR0000098_T0,B1,HGR0000098,HGR0000098,T0,COVID,60,Male,Infectious_Diseases,Alive,phenotype,42,,42,EUR,TRUE,Critical,,COVID19,alive,347,5.6,PBMC,AA500500 0001,BS-EQ-0009:T0:PBMC,BS-EQ-0009,Batch1,1,,Critical-Alive,2.95435018758758,PC1_high,Critical,,TRUE,PC1_high_NA,HGR0000098_T0,N,B1UnSort,2552,2128,424,407,17,0,0,407,HTO1,COVID
+B1_HGR0000110_T0,B1,HGR0000110,HGR0000110,T0,COVID,73,Male,Infectious_Diseases,Alive,phenotype,,3,,EUR,FALSE,Critical,3,COVID19,deceased,537,216,PBMC,AA500503 0001,BS-EQ-0013:T0:PBMC,BS-EQ-0013,Batch1,0,3,Critical-Deceased,3.68918247500143,PC1_high,Critical,early,,PC1_high_early,HGR0000110_T0,N,B1UnSort,561,427,134,129,5,0,0,129,HTO2,COVID
+B1_HGR0000136_T0,B1,HGR0000136,HGR0000136,T0,COVID,57,Female,Infectious_Diseases,Alive,Comorbid,3,16,3,EUR,FALSE,Moderate,17,COVID19,alive,193,10,PBMC,AA500507 0001,BS-EQ-0019:T0:PBMC,BS-EQ-0019,Batch1,1,17,Moderate-Alive,-2.91073693427368,PC1_low,Moderate,mid,,PC1_low_mid,HGR0000136_T0,N,B1UnSort,1956,1626,330,320,10,0,0,320,HTO1,COVID
+B1_HGR0000137_T0,B1,HGR0000137,HGR0000137,T0,COVID,79,Female,Infectious_Diseases,Alive,phenotype,3,3,3,EUR,FALSE,Severe,4,COVID19,alive,363,36.5,PBMC,AA500508 0001,BS-EQ-0020:T0:PBMC,BS-EQ-0020,Batch1,1,4,Severe-Alive,-1.2015610057303,PC1_low,Severe,early,,PC1_low_early,HGR0000137_T0,N,B1UnSort,1980,1635,345,329,16,0,0,329,HTO1,COVID
+B1_HGR0000141_T0,B1,HGR0000141,HGR0000141,T0,COVID,76,Male,Infectious_Diseases,Deceased,phenotype,,14,,EUR,FALSE,Critical,20,COVID19,deceased,0,294.8,PBMC,AA500509 0001,BS-EQ-0022:T0:PBMC,BS-EQ-0022,Batch1,6,20,Critical-Deceased,3.27623326424634,PC1_high,Critical,mid,,PC1_high_mid,HGR0000141_T0,N,B1UnSort,1807,1534,273,258,15,0,0,258,HTO2,COVID
+B1_HGR0000143_T0,B1,HGR0000143,HGR0000143,T0,COVID,54,Female,Infectious_Diseases,Alive,phenotype,34,7,34,EAS,TRUE,Critical,8,COVID19,alive,0,2.3,PBMC,AA500511 0001,BS-EQ-0024:T0:PBMC,BS-EQ-0024,Batch1,1,8,Critical-Alive,1.67405631685952,PC1_high,Critical,early,TRUE,PC1_high_early,HGR0000143_T0,N,B1UnSort,1636,1336,300,289,11,0,0,289,HTO2,COVID
+B1_IM000040_HC,B1,IM000040,IM000040,HC,HC,37,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,IM000040_HC,N,B1UnSort,2352,1958,394,379,15,0,0,379,HTO1,HC
+B2_CHI014_HC,B2,CHI014,CHI014,HC,HC,,na,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,CHI014_HC,N,B2UnSort,9222,2423,6799,5815,3,981,0,5815,HTO1|HTO2|HTO3,technical_control
+B2_HDML_PBMC_HC,B2,HDML,HDML_PBMC,HC,HC,45,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,HDML_PBMC_HC,N,B2UnSort,9618,2268,7350,7191,3,156,0,7191,HTO1,technical_control
+B2_HDVO_PBMC_HC,B2,HDVO,HDVO_PBMC,HC,HC,30,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,HDVO_PBMC_HC,N,B2UnSort,10568,3884,6684,6664,6,14,0,6664,HTO2,technical_control
+B2_HGR0000042_T0,B2,HGR0000042,HGR0000042,T0,COVID,53,Male,Infectious_Diseases,Alive,phenotype,15,5,15,EUR,FALSE,Critical,12,COVID19,alive,0,33,PBMC,AA500488 0001,BS-EQ-0015:T0:PBMC,BS-EQ-0015,Batch2,7,12,Critical-Alive,-0.0144850947759859,PC1_high,Critical,early,,PC1_high_early,HGR0000042_T0,N,B2UnSort,4551,1141,3410,2306,5,1099,0,2306,HTO3,COVID
+B2_HGR0000042_T1,B2,HGR0000042,HGR0000042,T1,COVID,53,Male,Infectious_Diseases,Alive,phenotype,15,5,15,EUR,FALSE,Critical,18,COVID19,alive,0,33,PBMC,AA500530 0001,BS-EQ-0015:T1:PBMC,BS-EQ-0015,Batch2,13,18,Critical-Alive,-0.0144850947759859,PC1_high,Critical,mid,,PC1_high_mid,HGR0000042_T1,N,B2UnSort,6641,1944,4697,4663,2,32,0,4663,HTO2,COVID
+B2_HGR0000069_T0,B2,HGR0000069,HGR0000069,T0,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,13,COVID19,alive,593,0.8,PBMC,AA500514 0001,BS-EQ-0001:T0:PBMC,BS-EQ-0001,Batch2,1,13,Critical-Alive,1.04716869546426,PC1_high,Severe,early,,PC1_high_early,HGR0000069_T0,N,B2UnSort,6909,2351,4558,4524,3,31,0,4524,HTO2,COVID
+B2_HGR0000069_T1,B2,HGR0000069,HGR0000069,T1,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,20,COVID19,alive,593,0.8,PBMC,AA500516 0001,BS-EQ-0001:T1:PBMC,BS-EQ-0001,Batch2,8,20,Critical-Alive,1.04716869546426,PC1_high,Severe,mid,,PC1_high_mid,HGR0000069_T1,N,B2UnSort,6981,1534,5447,4670,3,774,0,4670,HTO1,COVID
+B2_HGR0000069_T2,B2,HGR0000069,HGR0000069,T2,COVID,54,Male,Infectious_Diseases,Alive,phenotype,10,12,10,EUR,FALSE,Severe,33,COVID19,alive,593,0.8,PBMC,AA500552 0001,BS-EQ-0001:T2:PBMC,BS-EQ-0001,Batch2,21,33,Critical-Alive,1.04716869546426,PC1_high,Severe,late,,PC1_high_late,HGR0000069_T2,N,B2UnSort,5944,1658,4286,2413,7,1866,0,2413,HTO3,COVID
+B2_HGR0000092_T0,B2,HGR0000092,HGR0000092,T0,COVID,45,Male,Infectious_Diseases,Alive,phenotype,15,9,15,EUR,FALSE,Critical,11,COVID19,alive,871,179.7,PBMC,AA500497 0001,BS-EQ-0012:T0:PBMC,BS-EQ-0012,Batch2,2,11,Critical-Alive,-0.52272790656358,PC1_low,Critical,early,,PC1_low_early,HGR0000092_T0,N,B2UnSort,7743,2134,5609,5402,9,198,0,5402,HTO1,COVID
+B2_HGR0000092_T1,B2,HGR0000092,HGR0000092,T1,COVID,45,Male,Infectious_Diseases,Alive,phenotype,15,9,15,EUR,FALSE,Critical,18,COVID19,alive,871,179.7,PBMC,AA500531 0001,BS-EQ-0012:T1:PBMC,BS-EQ-0012,Batch2,9,18,Critical-Alive,-0.52272790656358,PC1_low,Critical,mid,,PC1_low_mid,HGR0000092_T1,N,B2UnSort,6429,1938,4491,3015,9,1467,0,3015,HTO3,COVID
+B2_HGR0000094_T0,B2,HGR0000094,HGR0000094,T0,COVID,61,Male,Infectious_Diseases,Alive,Comorbid,14,5,14,EUR,FALSE,Critical,6,COVID19-Negative,alive,382,0,PBMC,AA500499 0001,BS-EQ-0007:T0:PBMC,BS-EQ-0007,Batch2,1,6,Critical-Alive,0.726261730620933,PC1_high,Critical,early,,PC1_high_early,HGR0000094_T0,N,B2UnSort,4591,1418,3173,3148,2,23,0,3148,HTO2,COVID
+B2_HGR0000094_T1,B2,HGR0000094,HGR0000094,T1,COVID,61,Male,Infectious_Diseases,Alive,Comorbid,14,5,14,EUR,FALSE,Critical,13,COVID19-Negative,alive,382,0,PBMC,AA500532 0001,BS-EQ-0007:T1:PBMC,BS-EQ-0007,Batch2,8,13,Critical-Alive,0.726261730620933,PC1_high,Critical,early,,PC1_high_early,HGR0000094_T1,N,B2UnSort,2554,671,1883,967,2,914,0,967,HTO3,COVID
+B2_HGR0000115_T1,B2,HGR0000115,HGR0000115,T1,COVID,24,Male,Infectious_Diseases,Alive,phenotype,9,3,9,EUR,FALSE,Severe,11,COVID19,alive,0,14.8,PBMC,AA500535 0001,BS-EQ-0032:T1:PBMC,BS-EQ-0032,Batch2,8,11,Severe-Alive,-2.76779602430212,PC1_low,Severe,early,,PC1_low_early,HGR0000115_T1,N,B2UnSort,8138,2823,5315,5285,1,29,0,5285,HTO2,COVID
+B2_HGR0000124_T0,B2,HGR0000124,HGR0000124,T0,COVID,79,Male,Infectious_Diseases,Alive,phenotype,44,8,44,EUR,FALSE,Critical,36,COVID19,alive,0,0,PBMC,AA500504 0001,BS-EQ-0021:T0:PBMC,BS-EQ-0021,Batch2,28,36,,,,Critical,late,,NA_late,HGR0000124_T0,N,B2UnSort,14056,4842,9214,9135,6,73,0,9135,HTO2,COVID
+B2_HGR0000124_T1,B2,HGR0000124,HGR0000124,T1,COVID,79,Male,Infectious_Diseases,Alive,phenotype,44,8,44,EUR,FALSE,Critical,49,COVID19,alive,0,0,PBMC,AA500537 0001,BS-EQ-0021:T1:PBMC,BS-EQ-0021,Batch2,41,49,,,,Critical,late,,NA_late,HGR0000124_T1,N,B2UnSort,5969,1928,4041,2617,1,1423,0,2617,HTO3,COVID
+B2_HGR0000144_T0,B2,HGR0000144,HGR0000144,T0,COVID,84,Female,Infectious_Diseases,Alive,phenotype,25,12,25,EUR,FALSE,Severe,15,COVID19,alive,872,179,PBMC,AA500512 0001,BS-EQ-0028:T0:PBMC,BS-EQ-0028,Batch2,3,15,Severe-Alive,-0.158291992685593,PC1_high,Severe,early,,PC1_high_early,HGR0000144_T0,N,B2UnSort,5288,999,4289,2283,5,2001,0,2283,HTO3,COVID
+B2_HGR0000144_T2,B2,HGR0000144,HGR0000144,T2,COVID,84,Female,Infectious_Diseases,Alive,phenotype,25,12,25,EUR,FALSE,Severe,28,COVID19,alive,872,179,PBMC,AA500559 0001,BS-EQ-0028:T2:PBMC,BS-EQ-0028,Batch2,16,28,Severe-Alive,-0.158291992685593,PC1_high,Severe,late,,PC1_high_late,HGR0000144_T2,N,B2UnSort,8949,1691,7258,6434,8,816,0,6434,HTO1,COVID
+B2_HGR0000391_T0,B2,HGR0000391,HGR0000391,T0,COVID,66,Male,Infectious_Diseases,Alive,Comorbid,9,5,9,EUR,FALSE,Critical,6,COVID19,alive,220,2.2,PBMC,AA500523 0001,BS-EQ-0029:T0:PBMC,BS-EQ-0029,Batch2,1,6,Critical-Alive,-1.30858460669219,PC1_low,Critical,early,,PC1_low_early,HGR0000391_T0,N,B2UnSort,9292,2382,6910,6846,5,59,0,6846,HTO1,COVID
+B2_HGR0000395_T0,B2,HGR0000395,HGR0000395,T0,COVID,50,Male,Tropical_Diseases,Alive,phenotype,8,12,8,EUR,FALSE,Severe,14,COVID19,alive,229,12.1,PBMC,AA500525 0001,BS-EQ-0034:T0:PBMC,BS-EQ-0034,Batch2,2,14,Severe-Alive,-2.51313825051465,PC1_low,Severe,early,,PC1_low_early,HGR0000395_T0,N,B2UnSort,5628,1557,4071,2871,3,1197,0,2871,HTO3,COVID
+B2_HGR0000418_T1,B2,HGR0000418,HGR0000418,T1,COVID,50,Male,Infectious_Diseases,Alive,phenotype,14,21,14,EUR,FALSE,Critical,32,COVID19,alive,0,95.4,PBMC,AA500546 0001,BS-EQ-0036:T1:PBMC,BS-EQ-0036,Batch2,11,32,,,,Critical,late,,NA_late,HGR0000418_T1,N,B2UnSort,8474,1828,6646,6313,5,328,0,6313,HTO1,COVID
+B2_SHD2_HC,B2,SHD2,SHD2,HC,HC,53,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD2_HC,N,B2UnSort,8603,2885,5718,3538,1,2179,0,3538,HTO3,HC
+B2_SHD4_HC,B2,SHD4,SHD4,HC,HC,63,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD4_HC,N,B2UnSort,10177,2890,7287,7240,7,40,0,7240,HTO1,HC
+B2_SHD7_HC,B2,SHD7,SHD7,HC,HC,77,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD7_HC,N,B2UnSort,9502,2989,6513,6488,2,23,0,6488,HTO2,HC
+B3_CHI014_HC,B3,CHI014,CHI014,HC,HC,,na,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,CHI014_HC,N,B3UnSort,14018,4837,9181,7737,87,1357,0,7737,HTO1|HTO2|HTO3|HTO5,technical_control
+B3_HGR0000051_T0,B3,HGR0000051,HGR0000051,T0,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,10,COVID19,alive,618,276.8,PBMC,AA500489 0001,BS-EQ-0014:T0:PBMC,BS-EQ-0014,Batch3,3,10,Critical-Alive,0.0824050089906214,PC1_high,Critical,early,,PC1_high_early,HGR0000051_T0,N,B3UnSort,4378,1153,3225,3158,67,0,0,3158,HTO3,COVID
+B3_HGR0000051_T1,B3,HGR0000051,HGR0000051,T1,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,14,COVID19,alive,618,276.8,PBMC,AA500515 0001,BS-EQ-0014:T1:PBMC,BS-EQ-0014,Batch3,7,14,Critical-Alive,0.0824050089906214,PC1_high,Critical,early,,PC1_high_early,HGR0000051_T1,N,B3UnSort,6772,1715,5057,5057,0,0,0,5057,HTO2,COVID
+B3_HGR0000051_T2,B3,HGR0000051,HGR0000051,T2,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,17,COVID19,alive,618,276.8,PBMC,AA500551 0001,BS-EQ-0014:T2:PBMC,BS-EQ-0014,Batch3,10,17,Critical-Alive,0.0824050089906214,PC1_high,Critical,mid,,PC1_high_mid,HGR0000051_T2,N,B3UnSort,6060,1773,4287,2179,71,2037,0,2179,HTO5,COVID
+B3_HGR0000051_T3,B3,HGR0000051,HGR0000051,T3,COVID,55,Male,Tropical_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,20,COVID19,alive,618,276.8,PBMC,AA500563 0001,BS-EQ-0014:T3:PBMC,BS-EQ-0014,Batch3,13,20,Critical-Alive,0.0824050089906214,PC1_high,Critical,mid,,PC1_high_mid,HGR0000051_T3,N,B3UnSort,7400,2207,5193,5119,74,0,0,5119,HTO1,COVID
+B3_HGR0000101_T0,B3,HGR0000101,HGR0000101,T0,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,8,COVID19,alive,5211,68,PBMC,AA500501 0001,BS-EQ-0011:T0:PBMC,BS-EQ-0011,Batch3,1,8,Critical-Alive,2.38816634675649,PC1_high,Critical,early,,PC1_high_early,HGR0000101_T0,N,B3UnSort,2904,890,2014,977,23,1014,0,977,HTO5,COVID
+B3_HGR0000101_T1,B3,HGR0000101,HGR0000101,T1,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,14,COVID19,alive,5211,68,PBMC,AA500522 0001,BS-EQ-0011:T1:PBMC,BS-EQ-0011,Batch3,7,14,Critical-Alive,2.38816634675649,PC1_high,Critical,early,,PC1_high_early,HGR0000101_T1,N,B3UnSort,7872,2801,5071,5010,61,0,0,5010,HTO1,COVID
+B3_HGR0000101_T3,B3,HGR0000101,HGR0000101,T3,COVID,73,Male,Tropical_Diseases,Alive,phenotype,22,7,22,EUR,FALSE,Critical,27,COVID19,alive,5211,68,PBMC,AA500564 0001,BS-EQ-0011:T3:PBMC,BS-EQ-0011,Batch3,20,27,Critical-Alive,2.38816634675649,PC1_high,Critical,late,,PC1_high_late,HGR0000101_T3,N,B3UnSort,6075,1999,4076,4001,75,0,0,4001,HTO3,COVID
+B3_HGR0000102_T0,B3,HGR0000102,HGR0000102,T0,COVID,58,Male,Infectious_Diseases,Alive,phenotype,24,7,24,EUR,FALSE,Critical,10,COVID19,alive,208,4.9,PBMC,AA500502 0001,BS-EQ-0010:T0:PBMC,BS-EQ-0010,Batch3,3,10,Critical-Alive,-1.57139207217568,PC1_low,Critical,early,,PC1_low_early,HGR0000102_T0,N,B3UnSort,7555,2860,4695,4626,69,0,0,4626,HTO3,COVID
+B3_HGR0000102_T1,B3,HGR0000102,HGR0000102,T1,COVID,58,Male,Infectious_Diseases,Alive,phenotype,24,7,24,EUR,FALSE,Critical,17,COVID19,alive,208,4.9,PBMC,AA500533 0001,BS-EQ-0010:T1:PBMC,BS-EQ-0010,Batch3,10,17,Critical-Alive,-1.57139207217568,PC1_low,Critical,mid,,PC1_low_mid,HGR0000102_T1,N,B3UnSort,9292,3508,5784,5690,94,0,0,5690,HTO1,COVID
+B3_HGR0000134_T0,B3,HGR0000134,HGR0000134,T0,COVID,53,Male,Tropical_Diseases,Alive,Comorbid,8,14,8,EUR,FALSE,Critical,16,COVID19,alive,0,19.3,PBMC,AA500505 0001,BS-EQ-0017:T0:PBMC,BS-EQ-0017,Batch3,2,16,Critical-Alive,-1.92544770891706,PC1_low,Critical,early,,PC1_low_early,HGR0000134_T0,N,B3UnSort,8210,2121,6089,6089,0,0,0,6089,HTO2,COVID
+B3_HGR0000134_T1,B3,HGR0000134,HGR0000134,T1,COVID,53,Male,Tropical_Diseases,Alive,Comorbid,8,14,8,EUR,FALSE,Critical,22,COVID19,alive,0,19.3,PBMC,AA500538 0001,BS-EQ-0017:T1:PBMC,BS-EQ-0017,Batch3,8,22,Critical-Alive,-1.92544770891706,PC1_low,Critical,mid,,PC1_low_mid,HGR0000134_T1,N,B3UnSort,9372,2918,6454,2783,84,3587,0,2783,HTO5,COVID
+B3_HGR0000135_T0,B3,HGR0000135,HGR0000135,T0,COVID,59,Male,Infectious_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,10,COVID19,alive,0,30.7,PBMC,AA500506 0001,BS-EQ-0018:T0:PBMC,BS-EQ-0018,Batch3,3,10,Critical-Alive,0.75305315128394,PC1_high,Critical,early,,PC1_high_early,HGR0000135_T0,N,B3UnSort,8841,2772,6069,6069,0,0,0,6069,HTO2,COVID
+B3_HGR0000135_T1,B3,HGR0000135,HGR0000135,T1,COVID,59,Male,Infectious_Diseases,Alive,phenotype,14,7,14,EUR,FALSE,Critical,16,COVID19,alive,0,30.7,PBMC,AA500539 0001,BS-EQ-0018:T1:PBMC,BS-EQ-0018,Batch3,9,16,Critical-Alive,0.75305315128394,PC1_high,Critical,early,,PC1_high_early,HGR0000135_T1,N,B3UnSort,7509,2380,5129,5019,110,0,0,5019,HTO3,COVID
+B3_HGR0000142_T0,B3,HGR0000142,HGR0000142,T0,COVID,49,Male,Infectious_Diseases,Alive,Comorbid,9,12,9,EUR,FALSE,Critical,12,COVID19,alive,291,16.1,PBMC,AA500510 0001,BS-EQ-0023:T0:PBMC,BS-EQ-0023,Batch3,0,12,Critical-Alive,-0.617734576041256,PC1_low,Critical,early,,PC1_low_early,HGR0000142_T0,N,B3UnSort,7893,2761,5132,2866,80,2186,0,2866,HTO5,COVID
+B3_HGR0000392_T0,B3,HGR0000392,HGR0000392,T0,COVID,52,Male,Infectious_Diseases,Alive,phenotype,14,0,14,UNKNOWN,FALSE,Critical,2,COVID19,alive,0,0,PBMC,AA500524 0001,BS-EQ-0033:T0:PBMC,BS-EQ-0033,Batch3,2,2,Critical-Alive,-1.84274100791149,PC1_low,Critical,early,,PC1_low_early,HGR0000392_T0,N,B3UnSort,8061,2650,5411,5355,56,0,0,5355,HTO1,COVID
+B3_HGR0000392_T3,B3,HGR0000392,HGR0000392,T3,COVID,52,Male,Infectious_Diseases,Alive,phenotype,14,0,14,UNKNOWN,FALSE,Critical,13,COVID19,alive,0,0,PBMC,AA500565 0001,BS-EQ-0033:T3:PBMC,BS-EQ-0033,Batch3,13,13,Critical-Alive,-1.84274100791149,PC1_low,Critical,early,,PC1_low_early,HGR0000392_T3,N,B3UnSort,7958,3106,4852,1445,62,3345,0,1445,HTO5,COVID
+B3_HGR0000429_T1,B3,HGR0000429,HGR0000429,T1,COVID,54,Male,Infectious_Diseases,Alive,phenotype,13,16,13,,FALSE,Severe,26,COVID19,alive,0,124.8,PBMC,AA500549 0001,BS-EQ-0043:T1:PBMC,BS-EQ-0043,Batch3,10,26,Severe-Alive,-1.18921567127169,PC1_low,Severe,late,,PC1_low_late,HGR0000429_T1,N,B3UnSort,10783,3377,7406,7406,0,0,0,7406,HTO2,COVID
+B3_HGR0000429_T2,B3,HGR0000429,HGR0000429,T2,COVID,54,Male,Infectious_Diseases,Alive,phenotype,13,16,13,,FALSE,Severe,28,COVID19,alive,0,124.8,PBMC,AA500562 0001,BS-EQ-0043:T2:PBMC,BS-EQ-0043,Batch3,12,28,Severe-Alive,-1.18921567127169,PC1_low,Severe,late,,PC1_low_late,HGR0000429_T2,N,B3UnSort,8031,2940,5091,5000,91,0,0,5000,HTO3,COVID
+B3_HGR0000430_T1,B3,HGR0000430,HGR0000430,T1,COVID,77,Female,Tropical_Diseases,Alive,Comorbid,,7,,,FALSE,Critical,20,COVID19,deceased,0,63.5,PBMC,AA500550 0001,BS-EQ-0044:T1:PBMC,BS-EQ-0044,Batch3,13,20,Critical-Deceased,2.76885345317608,PC1_high,Critical,mid,,PC1_high_mid,HGR0000430_T1,N,B3UnSort,5262,1814,3448,1941,73,1434,0,1941,HTO5,COVID
+B3_SHD1_HC,B3,SHD1,SHD1,HC,HC,51,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD1_HC,N,B3UnSort,9623,3373,6250,6250,0,0,0,6250,HTO2,HC
+B3_SHD3_HC,B3,SHD3,SHD3,HC,HC,58,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD3_HC,N,B3UnSort,9440,4087,5353,5254,99,0,0,5254,HTO3,HC
+B3_SHD5_HC,B3,SHD5,SHD5,HC,HC,73,Male,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD5_HC,N,B3UnSort,11962,5358,6604,6524,80,0,0,6524,HTO1,HC
+B3_SHD6_HC,B3,SHD6,SHD6,HC,HC,74,Female,Healthy_control,na,HC,0,,,,,,0,,,,,,,,,,,,,,,HC,,,NA_NA,SHD6_HC,N,B3UnSort,9127,3531,5596,2554,70,2972,0,2554,HTO5,HC