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  1. paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/score_arms.log +183 -0
  2. paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/smoke_cpu.log +3 -0
  3. paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/summarize.log +87 -0
  4. paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3_raw_s04_f01common/labels.parquet +3 -0
paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/score_arms.log ADDED
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+ shared space: 5671 -> 5658 genes
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+ rules start 2026-10-04T14:13:27+09:00
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+ === zs_raw_s13
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+ === zs_cal_s13
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+ === lora3_raw_s13
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+ === lora3_raw_s04
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+ === zs_raw_s04
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+ === obs
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+ === obs_thin_zs
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+ === obs_thin_lora3
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+ arm rule n_high fraction_high_pooled_HC fraction_high_pooled_BD samples_lt20_high ifng_response_BD_mean ifng_response_BD_npos ifng_response_HC_mean ifng_response_HC_npos proinflammatory_BD_mean proinflammatory_BD_npos proinflammatory_HC_mean proinflammatory_HC_npos phagocytosis_antigen_BD_mean phagocytosis_antigen_BD_npos phagocytosis_antigen_HC_mean phagocytosis_antigen_HC_npos phagocytosis_antigen_mhcii_fcgr_BD_mean phagocytosis_antigen_mhcii_fcgr_BD_npos phagocytosis_antigen_mhcii_fcgr_HC_mean phagocytosis_antigen_mhcii_fcgr_HC_npos
12
+ zs_raw_s13 D 605 0.030116 0.020718 1/19 0.105190 7/9 0.111863 8/10 -0.233568 1/9 -0.253252 0/10 0.126617 7/9 0.064557 8/10 1.472943 9/9 1.038469 10/10
13
+ zs_raw_s13 A 605 0.030116 0.020718 1/19 0.105190 7/9 0.111863 8/10 -0.233568 1/9 -0.253252 0/10 0.126617 7/9 0.064557 8/10 1.472943 9/9 1.038469 10/10
14
+ zs_raw_s13 B 35 0.001895 0.001094 19/19 0.423009 6/7 0.043263 4/9 -0.074907 3/7 -0.257783 1/9 0.619114 7/7 0.271700 8/9 3.455237 7/7 1.579952 9/9
15
+ zs_raw_s13 C 151 0.007679 0.005060 19/19 0.233508 7/9 0.065211 6/9 -0.214396 1/9 -0.324948 0/9 0.203711 8/9 0.029645 5/9 1.738905 9/9 1.176498 8/9
16
+ zs_cal_s13 D 486 0.035215 0.042609 10/19 0.274489 9/9 0.338036 7/10 -0.040486 2/9 0.061890 7/10 0.205460 8/9 0.246179 10/10 0.984157 9/9 1.148248 10/10
17
+ zs_cal_s13 A 486 0.035215 0.042609 10/19 0.274489 9/9 0.338036 7/10 -0.040486 2/9 0.061890 7/10 0.205460 8/9 0.246179 10/10 0.984157 9/9 1.148248 10/10
18
+ zs_cal_s13 B 39 0.003086 0.003210 19/19 0.128020 5/8 0.043157 4/8 -0.084051 3/8 -0.067942 2/8 0.426944 8/8 0.391997 8/8 1.233657 7/8 1.977926 8/8
19
+ zs_cal_s13 C 132 0.009076 0.011966 19/19 0.314208 9/9 0.211282 6/9 -0.026982 2/9 -0.044328 5/9 0.290624 8/9 0.458990 9/9 1.115693 9/9 1.780283 9/9
20
+ lora3_raw_s13 D 580 0.037593 0.047945 3/19 0.219077 8/9 0.342064 10/10 0.003374 6/9 0.095407 10/10 0.177967 9/9 0.297898 10/10 0.986772 9/9 1.358473 10/10
21
+ lora3_raw_s13 A 580 0.037593 0.047945 3/19 0.219077 8/9 0.342064 10/10 0.003374 6/9 0.095407 10/10 0.177967 9/9 0.297898 10/10 0.986772 9/9 1.358473 10/10
22
+ lora3_raw_s13 B 46 0.002360 0.004298 19/19 0.188855 6/8 0.017097 4/8 -0.015964 5/8 -0.234573 2/8 0.393453 8/8 0.274635 7/8 1.307504 8/8 2.418970 8/8
23
+ lora3_raw_s13 C 180 0.010958 0.015445 19/19 0.185438 6/9 0.271120 8/10 0.016351 6/9 0.038969 5/10 0.326525 9/9 0.396551 10/10 1.286959 9/9 1.562987 10/10
24
+ lora3_raw_s04 D 587 0.034581 0.051004 4/19 0.134492 8/9 0.234237 9/10 0.003898 4/9 0.103743 8/10 0.216799 9/9 0.313698 10/10 0.919246 9/9 1.465815 10/10
25
+ lora3_raw_s04 A 587 0.034581 0.051004 4/19 0.134492 8/9 0.234237 9/10 0.003898 4/9 0.103743 8/10 0.216799 9/9 0.313698 10/10 0.919246 9/9 1.465815 10/10
26
+ lora3_raw_s04 B 52 0.003357 0.004284 19/19 0.226773 8/9 -0.022829 3/9 -0.018587 3/9 -0.028008 3/9 0.251507 8/9 0.374419 9/9 1.352862 9/9 2.225344 9/9
27
+ lora3_raw_s04 C 184 0.011415 0.015529 18/19 0.239626 9/9 0.192568 9/10 0.007934 5/9 0.078490 8/10 0.258646 9/9 0.471835 10/10 1.179472 9/9 1.837393 10/10
28
+ zs_raw_s04 D 586 0.029165 0.020101 2/19 0.234020 8/9 0.144876 6/10 -0.173845 1/9 -0.310153 0/10 0.168414 8/9 0.016156 6/10 1.440799 9/9 1.139317 10/10
29
+ zs_raw_s04 A 586 0.029165 0.020101 2/19 0.234020 8/9 0.144876 6/10 -0.173845 1/9 -0.310153 0/10 0.168414 8/9 0.016156 6/10 1.440799 9/9 1.139317 10/10
30
+ zs_raw_s04 B 31 0.001698 0.000957 19/19 0.129431 4/7 0.174004 3/6 -0.143646 3/7 -0.183156 1/6 0.510658 7/7 0.233307 5/6 2.089999 7/7 1.492563 6/6
31
+ zs_raw_s04 C 138 0.007891 0.004034 19/19 0.215642 8/9 0.147452 8/10 -0.222399 2/9 -0.358395 1/10 0.232239 6/9 0.076167 6/10 1.193990 7/9 0.847871 10/10
32
+ obs D 347 0.050107 0.057951 2/8 0.169939 4/4 0.214771 4/4 -0.105085 0/4 -0.197307 1/4 0.192487 4/4 0.087222 3/4 0.911178 4/4 0.663008 4/4
33
+ obs A 451 0.066571 0.074188 0/8 0.151825 4/4 0.170803 4/4 -0.098119 0/4 -0.181997 1/4 0.165468 4/4 0.087853 3/4 0.874751 4/4 0.649563 4/4
34
+ obs B 161 0.022906 0.027156 4/8 0.130362 4/4 0.183625 3/4 -0.054012 2/4 -0.151741 1/4 0.231272 4/4 0.010972 1/4 0.855248 4/4 0.579468 4/4
35
+ obs C 292 0.042591 0.048432 2/8 0.182685 4/4 0.207086 4/4 -0.116633 0/4 -0.177278 1/4 0.187708 4/4 0.074172 3/4 0.957877 4/4 0.625022 4/4
36
+ obs_thin_zs D 292 0.040802 0.049832 3/8 0.195492 4/4 0.362267 4/4 -0.061035 1/4 -0.100611 1/4 0.174919 4/4 0.175431 3/4 0.933036 4/4 0.765739 4/4
37
+ obs_thin_zs A 292 0.040802 0.049832 3/8 0.195492 4/4 0.362267 4/4 -0.061035 1/4 -0.100611 1/4 0.174919 4/4 0.175431 3/4 0.933036 4/4 0.765739 4/4
38
+ obs_thin_zs B 100 0.012527 0.018197 7/8 0.280178 4/4 0.191057 3/4 -0.132592 0/4 -0.108377 1/4 0.254057 4/4 0.199058 3/4 1.424293 4/4 0.760480 4/4
39
+ obs_thin_zs C 165 0.022548 0.028555 4/8 0.296048 4/4 0.125858 3/4 -0.094512 2/4 -0.097723 1/4 0.160447 4/4 0.129320 3/4 1.055140 4/4 0.700129 4/4
40
+ obs_thin_lora3 D 345 0.050107 0.057391 2/8 0.203949 4/4 0.242982 4/4 -0.096375 0/4 -0.183874 1/4 0.176999 4/4 0.087076 3/4 0.936617 4/4 0.696691 4/4
41
+ obs_thin_lora3 A 438 0.064782 0.071948 0/8 0.176321 4/4 0.154180 3/4 -0.081048 0/4 -0.211122 1/4 0.169385 4/4 0.079258 3/4 0.900610 4/4 0.651358 4/4
42
+ obs_thin_lora3 B 154 0.022190 0.025756 4/8 0.180749 3/4 0.228615 3/4 -0.065325 1/4 -0.133874 1/4 0.208684 4/4 0.029554 1/4 0.943120 4/4 0.590589 4/4
43
+ obs_thin_lora3 C 276 0.040086 0.045913 3/8 0.209429 4/4 0.188556 4/4 -0.102614 0/4 -0.165108 1/4 0.203915 4/4 0.076441 3/4 0.968062 4/4 0.632541 4/4
44
+ arm metric contrast n1 n2 mean1 mean2 direction mw_p_two_sided_descriptive
45
+ zs_raw_s13 monocyte_fraction_all_cells BD vs HC 9 10 0.325000 0.200560 > 0.006233
46
+ zs_raw_s13 monocyte_fraction_all_cells BDU vs BDV 3 6 0.262400 0.356300 < 0.261905
47
+ zs_raw_s13 monocyte_fraction_all_cells BDV vs HC 6 10 0.356300 0.200560 > 0.002997
48
+ zs_raw_s13 monocyte_fraction_all_cells BDU vs HC 3 10 0.262400 0.200560 > 0.216783
49
+ zs_raw_s13 monocyte_fraction_pbmc5_cells BD vs HC 9 10 0.336291 0.203347 > 0.006233
50
+ zs_raw_s13 monocyte_fraction_pbmc5_cells BDU vs BDV 3 6 0.268520 0.370177 < 0.166667
51
+ zs_raw_s13 monocyte_fraction_pbmc5_cells BDV vs HC 6 10 0.370177 0.203347 > 0.002997
52
+ zs_raw_s13 monocyte_fraction_pbmc5_cells BDU vs HC 3 10 0.268520 0.203347 > 0.216783
53
+ zs_raw_s13 c1q_high_fraction_D BD vs HC 9 10 0.021198 0.030981 < 0.010112
54
+ zs_raw_s13 c1q_high_fraction_D BDU vs BDV 3 6 0.019328 0.022133 < 0.380952
55
+ zs_raw_s13 c1q_high_fraction_D BDV vs HC 6 10 0.022133 0.030981 < 0.031219
56
+ zs_raw_s13 c1q_high_fraction_D BDU vs HC 3 10 0.019328 0.030981 < 0.048951
57
+ zs_raw_s13 c1q_high_fraction_A BD vs HC 9 10 0.021198 0.030981 < 0.010112
58
+ zs_raw_s13 c1q_high_fraction_A BDU vs BDV 3 6 0.019328 0.022133 < 0.380952
59
+ zs_raw_s13 c1q_high_fraction_A BDV vs HC 6 10 0.022133 0.030981 < 0.031219
60
+ zs_raw_s13 c1q_high_fraction_A BDU vs HC 3 10 0.019328 0.030981 < 0.048951
61
+ zs_raw_s13 c1q_high_fraction_B BD vs HC 9 10 0.000991 0.001997 < 0.130235
62
+ zs_raw_s13 c1q_high_fraction_B BDU vs BDV 3 6 0.000662 0.001156 < 0.194835
63
+ zs_raw_s13 c1q_high_fraction_B BDV vs HC 6 10 0.001156 0.001997 < 0.277722
64
+ zs_raw_s13 c1q_high_fraction_B BDU vs HC 3 10 0.000662 0.001997 < 0.175702
65
+ zs_raw_s13 c1q_high_fraction_C BD vs HC 9 10 0.005072 0.007967 < 0.012763
66
+ zs_raw_s13 c1q_high_fraction_C BDU vs BDV 3 6 0.004045 0.005585 < 0.047619
67
+ zs_raw_s13 c1q_high_fraction_C BDV vs HC 6 10 0.005585 0.007967 < 0.041958
68
+ zs_raw_s13 c1q_high_fraction_C BDU vs HC 3 10 0.004045 0.007967 < 0.048951
69
+ zs_cal_s13 monocyte_fraction_all_cells BD vs HC 9 10 0.152289 0.110180 > 0.066193
70
+ zs_cal_s13 monocyte_fraction_all_cells BDU vs BDV 3 6 0.103600 0.176633 < 0.095238
71
+ zs_cal_s13 monocyte_fraction_all_cells BDV vs HC 6 10 0.176633 0.110180 > 0.015984
72
+ zs_cal_s13 monocyte_fraction_all_cells BDU vs HC 3 10 0.103600 0.110180 < 0.937063
73
+ zs_cal_s13 monocyte_fraction_pbmc5_cells BD vs HC 9 10 0.155369 0.111738 > 0.066193
74
+ zs_cal_s13 monocyte_fraction_pbmc5_cells BDU vs BDV 3 6 0.104891 0.180608 < 0.095238
75
+ zs_cal_s13 monocyte_fraction_pbmc5_cells BDV vs HC 6 10 0.180608 0.111738 > 0.015984
76
+ zs_cal_s13 monocyte_fraction_pbmc5_cells BDU vs HC 3 10 0.104891 0.111738 < 0.937063
77
+ zs_cal_s13 c1q_high_fraction_D BD vs HC 9 10 0.042916 0.034257 > 0.236445
78
+ zs_cal_s13 c1q_high_fraction_D BDU vs BDV 3 6 0.040331 0.044209 < 0.904762
79
+ zs_cal_s13 c1q_high_fraction_D BDV vs HC 6 10 0.044209 0.034257 > 0.263487
80
+ zs_cal_s13 c1q_high_fraction_D BDU vs HC 3 10 0.040331 0.034257 > 0.573427
81
+ zs_cal_s13 c1q_high_fraction_A BD vs HC 9 10 0.042916 0.034257 > 0.236445
82
+ zs_cal_s13 c1q_high_fraction_A BDU vs BDV 3 6 0.040331 0.044209 < 0.904762
83
+ zs_cal_s13 c1q_high_fraction_A BDV vs HC 6 10 0.044209 0.034257 > 0.263487
84
+ zs_cal_s13 c1q_high_fraction_A BDU vs HC 3 10 0.040331 0.034257 > 0.573427
85
+ zs_cal_s13 c1q_high_fraction_B BD vs HC 9 10 0.003286 0.003078 > 0.774666
86
+ zs_cal_s13 c1q_high_fraction_B BDU vs BDV 3 6 0.002583 0.003638 < 0.380952
87
+ zs_cal_s13 c1q_high_fraction_B BDV vs HC 6 10 0.003638 0.003078 > 0.480472
88
+ zs_cal_s13 c1q_high_fraction_B BDU vs HC 3 10 0.002583 0.003078 < 0.670896
89
+ zs_cal_s13 c1q_high_fraction_C BD vs HC 9 10 0.011915 0.008923 > 0.205667
90
+ zs_cal_s13 c1q_high_fraction_C BDU vs BDV 3 6 0.010467 0.012639 < 0.547619
91
+ zs_cal_s13 c1q_high_fraction_C BDV vs HC 6 10 0.012639 0.008923 > 0.147103
92
+ zs_cal_s13 c1q_high_fraction_C BDU vs HC 3 10 0.010467 0.008923 > 0.811189
93
+ lora3_raw_s13 monocyte_fraction_all_cells BD vs HC 9 10 0.165467 0.118640 > 0.010112
94
+ lora3_raw_s13 monocyte_fraction_all_cells BDU vs BDV 3 6 0.147267 0.174567 < 0.261905
95
+ lora3_raw_s13 monocyte_fraction_all_cells BDV vs HC 6 10 0.174567 0.118640 > 0.004745
96
+ lora3_raw_s13 monocyte_fraction_all_cells BDU vs HC 3 10 0.147267 0.118640 > 0.286713
97
+ lora3_raw_s13 monocyte_fraction_pbmc5_cells BD vs HC 9 10 0.167226 0.120064 > 0.010112
98
+ lora3_raw_s13 monocyte_fraction_pbmc5_cells BDU vs BDV 3 6 0.148229 0.176725 < 0.261905
99
+ lora3_raw_s13 monocyte_fraction_pbmc5_cells BDV vs HC 6 10 0.176725 0.120064 > 0.004745
100
+ lora3_raw_s13 monocyte_fraction_pbmc5_cells BDU vs HC 3 10 0.148229 0.120064 > 0.286713
101
+ lora3_raw_s13 c1q_high_fraction_D BD vs HC 9 10 0.047684 0.039486 > 0.130911
102
+ lora3_raw_s13 c1q_high_fraction_D BDU vs BDV 3 6 0.037327 0.052862 < 0.095238
103
+ lora3_raw_s13 c1q_high_fraction_D BDV vs HC 6 10 0.052862 0.039486 > 0.041958
104
+ lora3_raw_s13 c1q_high_fraction_D BDU vs HC 3 10 0.037327 0.039486 < 1.000000
105
+ lora3_raw_s13 c1q_high_fraction_A BD vs HC 9 10 0.047684 0.039486 > 0.130911
106
+ lora3_raw_s13 c1q_high_fraction_A BDU vs BDV 3 6 0.037327 0.052862 < 0.095238
107
+ lora3_raw_s13 c1q_high_fraction_A BDV vs HC 6 10 0.052862 0.039486 > 0.041958
108
+ lora3_raw_s13 c1q_high_fraction_A BDU vs HC 3 10 0.037327 0.039486 < 1.000000
109
+ lora3_raw_s13 c1q_high_fraction_B BD vs HC 9 10 0.004191 0.002414 > 0.306584
110
+ lora3_raw_s13 c1q_high_fraction_B BDU vs BDV 3 6 0.002807 0.004883 < 0.547619
111
+ lora3_raw_s13 c1q_high_fraction_B BDV vs HC 6 10 0.004883 0.002414 > 0.174841
112
+ lora3_raw_s13 c1q_high_fraction_B BDU vs HC 3 10 0.002807 0.002414 > 1.000000
113
+ lora3_raw_s13 c1q_high_fraction_C BD vs HC 9 10 0.015337 0.011209 > 0.094166
114
+ lora3_raw_s13 c1q_high_fraction_C BDU vs BDV 3 6 0.013427 0.016292 < 0.380952
115
+ lora3_raw_s13 c1q_high_fraction_C BDV vs HC 6 10 0.016292 0.011209 > 0.072677
116
+ lora3_raw_s13 c1q_high_fraction_C BDU vs HC 3 10 0.013427 0.011209 > 0.573427
117
+ lora3_raw_s04 monocyte_fraction_all_cells BD vs HC 9 10 0.166000 0.119140 > 0.008951
118
+ lora3_raw_s04 monocyte_fraction_all_cells BDU vs BDV 3 6 0.149333 0.174333 < 0.261905
119
+ lora3_raw_s04 monocyte_fraction_all_cells BDV vs HC 6 10 0.174333 0.119140 > 0.004745
120
+ lora3_raw_s04 monocyte_fraction_all_cells BDU vs HC 3 10 0.149333 0.119140 > 0.236079
121
+ lora3_raw_s04 monocyte_fraction_pbmc5_cells BD vs HC 9 10 0.167804 0.120470 > 0.010112
122
+ lora3_raw_s04 monocyte_fraction_pbmc5_cells BDU vs BDV 3 6 0.150394 0.176510 < 0.261905
123
+ lora3_raw_s04 monocyte_fraction_pbmc5_cells BDV vs HC 6 10 0.176510 0.120470 > 0.004745
124
+ lora3_raw_s04 monocyte_fraction_pbmc5_cells BDU vs HC 3 10 0.150394 0.120470 > 0.286713
125
+ lora3_raw_s04 c1q_high_fraction_D BD vs HC 9 10 0.050892 0.035537 > 0.016011
126
+ lora3_raw_s04 c1q_high_fraction_D BDU vs BDV 3 6 0.045019 0.053828 < 0.380952
127
+ lora3_raw_s04 c1q_high_fraction_D BDV vs HC 6 10 0.053828 0.035537 > 0.015984
128
+ lora3_raw_s04 c1q_high_fraction_D BDU vs HC 3 10 0.045019 0.035537 > 0.216783
129
+ lora3_raw_s04 c1q_high_fraction_A BD vs HC 9 10 0.050892 0.035537 > 0.016011
130
+ lora3_raw_s04 c1q_high_fraction_A BDU vs BDV 3 6 0.045019 0.053828 < 0.380952
131
+ lora3_raw_s04 c1q_high_fraction_A BDV vs HC 6 10 0.053828 0.035537 > 0.015984
132
+ lora3_raw_s04 c1q_high_fraction_A BDU vs HC 3 10 0.045019 0.035537 > 0.216783
133
+ lora3_raw_s04 c1q_high_fraction_B BD vs HC 9 10 0.004455 0.003523 > 0.775051
134
+ lora3_raw_s04 c1q_high_fraction_B BDU vs BDV 3 6 0.004808 0.004279 > 0.714286
135
+ lora3_raw_s04 c1q_high_fraction_B BDV vs HC 6 10 0.004279 0.003523 > 1.000000
136
+ lora3_raw_s04 c1q_high_fraction_B BDU vs HC 3 10 0.004808 0.003523 > 0.573427
137
+ lora3_raw_s04 c1q_high_fraction_C BD vs HC 9 10 0.015731 0.011886 > 0.270344
138
+ lora3_raw_s04 c1q_high_fraction_C BDU vs BDV 3 6 0.014132 0.016530 < 0.904762
139
+ lora3_raw_s04 c1q_high_fraction_C BDV vs HC 6 10 0.016530 0.011886 > 0.313187
140
+ lora3_raw_s04 c1q_high_fraction_C BDU vs HC 3 10 0.014132 0.011886 > 0.573427
141
+ zs_raw_s04 monocyte_fraction_all_cells BD vs HC 9 10 0.325022 0.200240 > 0.006233
142
+ zs_raw_s04 monocyte_fraction_all_cells BDU vs BDV 3 6 0.261733 0.356667 < 0.166667
143
+ zs_raw_s04 monocyte_fraction_all_cells BDV vs HC 6 10 0.356667 0.200240 > 0.002997
144
+ zs_raw_s04 monocyte_fraction_all_cells BDU vs HC 3 10 0.261733 0.200240 > 0.216783
145
+ zs_raw_s04 monocyte_fraction_pbmc5_cells BD vs HC 9 10 0.336235 0.203110 > 0.006233
146
+ zs_raw_s04 monocyte_fraction_pbmc5_cells BDU vs BDV 3 6 0.267795 0.370455 < 0.166667
147
+ zs_raw_s04 monocyte_fraction_pbmc5_cells BDV vs HC 6 10 0.370455 0.203110 > 0.002997
148
+ zs_raw_s04 monocyte_fraction_pbmc5_cells BDU vs HC 3 10 0.267795 0.203110 > 0.216783
149
+ zs_raw_s04 c1q_high_fraction_D BD vs HC 9 10 0.021267 0.028576 < 0.030486
150
+ zs_raw_s04 c1q_high_fraction_D BDU vs BDV 3 6 0.025119 0.019341 > 0.380952
151
+ zs_raw_s04 c1q_high_fraction_D BDV vs HC 6 10 0.019341 0.028576 < 0.015984
152
+ zs_raw_s04 c1q_high_fraction_D BDU vs HC 3 10 0.025119 0.028576 < 0.468531
153
+ zs_raw_s04 c1q_high_fraction_A BD vs HC 9 10 0.021267 0.028576 < 0.030486
154
+ zs_raw_s04 c1q_high_fraction_A BDU vs BDV 3 6 0.025119 0.019341 > 0.380952
155
+ zs_raw_s04 c1q_high_fraction_A BDV vs HC 6 10 0.019341 0.028576 < 0.015984
156
+ zs_raw_s04 c1q_high_fraction_A BDU vs HC 3 10 0.025119 0.028576 < 0.468531
157
+ zs_raw_s04 c1q_high_fraction_B BD vs HC 9 10 0.001050 0.001463 < 0.430778
158
+ zs_raw_s04 c1q_high_fraction_B BDU vs BDV 3 6 0.001286 0.000932 > 0.795418
159
+ zs_raw_s04 c1q_high_fraction_B BDV vs HC 6 10 0.000932 0.001463 < 0.474222
160
+ zs_raw_s04 c1q_high_fraction_B BDU vs HC 3 10 0.001286 0.001463 < 0.663789
161
+ zs_raw_s04 c1q_high_fraction_C BD vs HC 9 10 0.004346 0.008237 < 0.004849
162
+ zs_raw_s04 c1q_high_fraction_C BDU vs BDV 3 6 0.004908 0.004066 > 0.904762
163
+ zs_raw_s04 c1q_high_fraction_C BDV vs HC 6 10 0.004066 0.008237 < 0.007493
164
+ zs_raw_s04 c1q_high_fraction_C BDU vs HC 3 10 0.004908 0.008237 < 0.076923
165
+ obs monocyte_fraction_all_cells BD vs HC 4 4 0.166745 0.130389 > 0.342857
166
+ obs monocyte_fraction_pbmc5_cells BD vs HC 4 4 0.171616 0.134791 > 0.342857
167
+ obs c1q_high_fraction_D BD vs HC 4 4 0.063212 0.051242 > 0.485714
168
+ obs c1q_high_fraction_A BD vs HC 4 4 0.081572 0.068331 > 0.485714
169
+ obs c1q_high_fraction_B BD vs HC 4 4 0.030295 0.024457 > 0.685714
170
+ obs c1q_high_fraction_C BD vs HC 4 4 0.054312 0.043845 > 0.485714
171
+ obs_thin_zs monocyte_fraction_all_cells BD vs HC 4 4 0.166745 0.130389 > 0.342857
172
+ obs_thin_zs monocyte_fraction_pbmc5_cells BD vs HC 4 4 0.171616 0.134791 > 0.342857
173
+ obs_thin_zs c1q_high_fraction_D BD vs HC 4 4 0.055272 0.041776 > 0.485714
174
+ obs_thin_zs c1q_high_fraction_A BD vs HC 4 4 0.055272 0.041776 > 0.485714
175
+ obs_thin_zs c1q_high_fraction_B BD vs HC 4 4 0.020191 0.015231 > 0.685714
176
+ obs_thin_zs c1q_high_fraction_C BD vs HC 4 4 0.031303 0.024901 > 0.685714
177
+ obs_thin_lora3 monocyte_fraction_all_cells BD vs HC 4 4 0.166745 0.130389 > 0.342857
178
+ obs_thin_lora3 monocyte_fraction_pbmc5_cells BD vs HC 4 4 0.171616 0.134791 > 0.342857
179
+ obs_thin_lora3 c1q_high_fraction_D BD vs HC 4 4 0.062446 0.051343 > 0.485714
180
+ obs_thin_lora3 c1q_high_fraction_A BD vs HC 4 4 0.079640 0.067037 > 0.485714
181
+ obs_thin_lora3 c1q_high_fraction_B BD vs HC 4 4 0.028832 0.024074 > 0.685714
182
+ obs_thin_lora3 c1q_high_fraction_C BD vs HC 4 4 0.051460 0.040813 > 0.485714
183
+ done 2026-10-04T14:13:38+09:00
paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/smoke_cpu.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ 2026-10-04T13:21:58 mode=lora trainable=1,296,224 rows train/inner/test=3/0/16 cells(train)=16,635
2
+ 2026-10-04T13:21:58 step 0 inner-val loss nan (pretrained)
3
+ 2026-10-04T13:22:02 saved /tmp/claude-1000/-home-sj-server-1/79519e81-f10b-453d-b06f-e70ccb0d836a/scratchpad/smoke_lora3/checkpoint_ft.pt (selected step 20, inner-val nan vs pretrained nan); sha fc56014cb69b
paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/summarize.log ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm rows metric n_bd n_hc bd_mean_pct hc_mean_pct gap_pp mw_p
2
+ zs_raw_s13 test c1q_high_rule_A 6 10 2.158 3.098 -0.940 0.022
3
+ zs_raw_s13 test c1q_high_rule_B 6 10 0.111 0.200 -0.089 0.232
4
+ zs_raw_s13 test c1q_high_rule_D 6 10 2.158 3.098 -0.940 0.022
5
+ zs_raw_s13 test monocyte_fraction 6 10 30.187 20.056 10.131 0.022
6
+ zs_raw_s13 all c1q_high_rule_A 9 10 2.120 3.098 -0.978 0.010
7
+ zs_raw_s13 all c1q_high_rule_B 9 10 0.099 0.200 -0.101 0.130
8
+ zs_raw_s13 all c1q_high_rule_D 9 10 2.120 3.098 -0.978 0.010
9
+ zs_raw_s13 all monocyte_fraction 9 10 32.500 20.056 12.444 0.006
10
+ zs_cal_s13 test c1q_high_rule_A 6 10 4.540 3.426 1.114 0.181
11
+ zs_cal_s13 test c1q_high_rule_B 6 10 0.348 0.308 0.040 0.786
12
+ zs_cal_s13 test c1q_high_rule_D 6 10 4.540 3.426 1.114 0.181
13
+ zs_cal_s13 test monocyte_fraction 6 10 13.487 11.018 2.469 0.263
14
+ zs_cal_s13 all c1q_high_rule_A 9 10 4.292 3.426 0.866 0.236
15
+ zs_cal_s13 all c1q_high_rule_B 9 10 0.329 0.308 0.021 0.775
16
+ zs_cal_s13 all c1q_high_rule_D 9 10 4.292 3.426 0.866 0.236
17
+ zs_cal_s13 all monocyte_fraction 9 10 15.229 11.018 4.211 0.066
18
+ lora3_raw_s13 test c1q_high_rule_A 6 10 4.859 3.949 0.911 0.263
19
+ lora3_raw_s13 test c1q_high_rule_B 6 10 0.254 0.241 0.013 0.870
20
+ lora3_raw_s13 test c1q_high_rule_D 6 10 4.859 3.949 0.911 0.263
21
+ lora3_raw_s13 test monocyte_fraction 6 10 15.967 11.864 4.103 0.042
22
+ lora3_raw_s13 all c1q_high_rule_A 9 10 4.768 3.949 0.820 0.131
23
+ lora3_raw_s13 all c1q_high_rule_B 9 10 0.419 0.241 0.178 0.307
24
+ lora3_raw_s13 all c1q_high_rule_D 9 10 4.768 3.949 0.820 0.131
25
+ lora3_raw_s13 all monocyte_fraction 9 10 16.547 11.864 4.683 0.010
26
+ lora3_raw_s04 test c1q_high_rule_A 6 10 5.275 3.554 1.721 0.022
27
+ lora3_raw_s04 test c1q_high_rule_B 6 10 0.372 0.352 0.020 1.000
28
+ lora3_raw_s04 test c1q_high_rule_D 6 10 5.275 3.554 1.721 0.022
29
+ lora3_raw_s04 test monocyte_fraction 6 10 16.040 11.914 4.126 0.039
30
+ lora3_raw_s04 all c1q_high_rule_A 9 10 5.089 3.554 1.535 0.016
31
+ lora3_raw_s04 all c1q_high_rule_B 9 10 0.446 0.352 0.093 0.775
32
+ lora3_raw_s04 all c1q_high_rule_D 9 10 5.089 3.554 1.535 0.016
33
+ lora3_raw_s04 all monocyte_fraction 9 10 16.600 11.914 4.686 0.009
34
+ zs_raw_s04 test c1q_high_rule_A 6 10 2.226 2.858 -0.631 0.073
35
+ zs_raw_s04 test c1q_high_rule_B 6 10 0.128 0.146 -0.018 0.620
36
+ zs_raw_s04 test c1q_high_rule_D 6 10 2.226 2.858 -0.631 0.073
37
+ zs_raw_s04 test monocyte_fraction 6 10 30.233 20.024 10.209 0.022
38
+ zs_raw_s04 all c1q_high_rule_A 9 10 2.127 2.858 -0.731 0.030
39
+ zs_raw_s04 all c1q_high_rule_B 9 10 0.105 0.146 -0.041 0.431
40
+ zs_raw_s04 all c1q_high_rule_D 9 10 2.127 2.858 -0.731 0.030
41
+ zs_raw_s04 all monocyte_fraction 9 10 32.502 20.024 12.478 0.006
42
+ obs observed c1q_high_rule_A 4 4 8.157 6.833 1.324 0.486
43
+ obs observed c1q_high_rule_B 4 4 3.030 2.446 0.584 0.686
44
+ obs observed c1q_high_rule_D 4 4 6.321 5.124 1.197 0.486
45
+ obs observed monocyte_fraction 4 4 16.675 13.039 3.636 0.343
46
+ obs_thin_zs observed c1q_high_rule_A 4 4 5.527 4.178 1.350 0.486
47
+ obs_thin_zs observed c1q_high_rule_B 4 4 2.019 1.523 0.496 0.686
48
+ obs_thin_zs observed c1q_high_rule_D 4 4 5.527 4.178 1.350 0.486
49
+ obs_thin_zs observed monocyte_fraction 4 4 16.675 13.039 3.636 0.343
50
+ obs_thin_lora3 observed c1q_high_rule_A 4 4 7.964 6.704 1.260 0.486
51
+ obs_thin_lora3 observed c1q_high_rule_B 4 4 2.883 2.407 0.476 0.686
52
+ obs_thin_lora3 observed c1q_high_rule_D 4 4 6.245 5.134 1.110 0.486
53
+ obs_thin_lora3 observed monocyte_fraction 4 4 16.675 13.039 3.636 0.343
54
+ donor sc_sample arm monocyte_fraction_pct c1q_high_A_pct c1q_high_B_pct c1q_high_C_pct c1q_high_D_pct
55
+ BDV4 PBMC_BD_2 zs_raw_s13 23.00 2.78 0.00 0.61 2.78
56
+ BDV4 PBMC_BD_2 zs_cal_s13 13.56 2.36 0.29 0.44 2.36
57
+ BDV4 PBMC_BD_2 lora3_raw_s13 13.66 5.42 1.02 2.34 5.42
58
+ BDV4 PBMC_BD_2 lora3_raw_s04 13.92 5.32 1.15 2.44 5.32
59
+ BDV4 PBMC_BD_2 zs_raw_s04 23.46 2.73 0.09 0.51 2.73
60
+ BDV4 PBMC_BD_2 obs 14.94 8.99 3.81 6.34 7.19
61
+ BDV4 PBMC_BD_2 obs_thin_zs 14.94 6.87 2.85 4.55 6.87
62
+ BDV4 PBMC_BD_2 obs_thin_lora3 14.94 8.56 3.70 6.03 7.08
63
+ BDV5 PBMC_BD_3 zs_raw_s13 44.00 1.27 0.14 0.41 1.27
64
+ BDV5 PBMC_BD_3 zs_cal_s13 20.16 4.56 0.40 1.49 4.56
65
+ BDV5 PBMC_BD_3 lora3_raw_s13 19.24 4.78 0.73 1.87 4.78
66
+ BDV5 PBMC_BD_3 lora3_raw_s04 18.92 5.39 0.53 1.80 5.39
67
+ BDV5 PBMC_BD_3 zs_raw_s04 43.72 1.19 0.00 0.23 1.19
68
+ BDV5 PBMC_BD_3 obs 20.89 8.44 2.45 5.03 5.44
69
+ BDV5 PBMC_BD_3 obs_thin_zs 20.89 5.85 1.36 2.04 5.85
70
+ BDV5 PBMC_BD_3 obs_thin_lora3 20.89 8.30 2.04 4.76 5.17
71
+ BDV6 PBMC_BD_4 zs_raw_s13 44.38 2.07 0.09 0.50 2.07
72
+ BDV6 PBMC_BD_4 zs_cal_s13 22.42 4.46 0.18 1.16 4.46
73
+ BDV6 PBMC_BD_4 lora3_raw_s13 20.22 3.56 0.49 1.19 3.56
74
+ BDV6 PBMC_BD_4 lora3_raw_s04 20.32 3.44 0.10 0.59 3.44
75
+ BDV6 PBMC_BD_4 zs_raw_s04 43.94 1.87 0.09 0.32 1.87
76
+ BDV6 PBMC_BD_4 obs 20.51 4.78 1.57 2.78 4.07
77
+ BDV6 PBMC_BD_4 obs_thin_zs 20.51 2.64 1.00 1.64 2.64
78
+ BDV6 PBMC_BD_4 obs_thin_lora3 20.51 4.56 1.50 2.64 4.14
79
+ arm monocytes pooled_rule_A_pct pooled_rule_B_pct pooled_rule_C_pct pooled_rule_D_pct
80
+ zs_raw_s13 19084 2.615 0.157 0.650 2.615
81
+ zs_cal_s13 9555 3.914 0.324 1.057 3.914
82
+ lora3_raw_s13 10722 4.300 0.252 1.250 4.300
83
+ lora3_raw_s04 10769 4.309 0.353 1.337 4.309
84
+ zs_raw_s04 19082 2.552 0.147 0.629 2.552
85
+ obs 6366 7.085 2.529 4.587 5.451
86
+ obs_thin_zs 6366 4.587 1.571 2.592 4.587
87
+ obs_thin_lora3 6366 6.880 2.419 4.336 5.419
paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3_raw_s04_f01common/labels.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:278c7b20c1a8a19b21d0ff5aaaa971eb7b71fedbfd9dbccbce648d82971a44bf
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+ size 2263716