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Archive 4 checkpoints (1-4)

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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2/state_types.tsv ADDED
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+ state type n_cells
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+ B cell|Effector B cell B cell 1048
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+ B cell|Memory B cell B cell 1606
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+ B cell|Naive B cell B cell 2854
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+ B cell|Plasma cell B cell 330
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+ B cell|Transitional B cell B cell 990
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+ DC|ASDC DC 31
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+ DC|cDC1 DC 81
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+ DC|cDC2 DC 1800
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+ DC|pDC DC 505
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+ Monocyte|CD14 monocyte Monocyte 11178
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+ Monocyte|CD16 monocyte Monocyte 3354
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+ Monocyte|Intermediate monocyte Monocyte 7683
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+ NK cell|CD56bright NK cell NK cell 1691
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+ NK cell|CD56dim NK cell NK cell 8024
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+ NK cell|Proliferating NK cell NK cell 3064
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+ Other|Erythrocyte Other 3643
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+ Other|ILC Other 1497
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+ Other|Platelet Other 1050
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+ Other|Progenitor cell Other 84
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+ T cell|CD8aa T cell 4957
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+ T cell|DN T cell T cell 9138
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+ T cell|MAIT T cell 8469
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+ T cell|Memory CD4 T cell T cell 12554
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+ T cell|Memory CD8 T cell T cell 10694
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+ T cell|Naive CD4 T cell T cell 11533
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+ T cell|Naive CD8 T cell T cell 11488
28
+ T cell|Proliferating T cell T cell 1080
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+ T cell|Treg T cell 3792
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+ T cell|gdT T cell 4086
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/SPLIT.json ADDED
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+ {
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+ "dataset": "giroux2022",
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+ "kind": "fewshot",
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+ "idx": 2,
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+ "reference": [
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+ "450905_d0",
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+ "450905_d14",
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+ "0B943B_d0",
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+ "0B943B_d14",
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+ "B85D75_d0",
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+ "B85D75_d7",
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+ "180E1A_d0",
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+ "180E1A_d7",
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+ "180E1A_d14",
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+ "BAAF62_d0",
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+ "BAAF62_d7",
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+ "BAAF62_d14"
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+ ],
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+ "mixture": [
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+ "7085CA_d0",
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+ "7085CA_d7",
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+ "7085CA_d14",
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+ "2AD75E_d0",
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+ "2AD75E_d7",
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+ "2AD75E_d14",
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+ "82CCF5_d0",
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+ "82CCF5_d7",
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+ "82CCF5_d14",
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+ "0BF51C_d0",
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+ "0BF51C_d7",
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+ "0BF51C_d14"
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+ ],
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+ "train_donors": [
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+ "0B943B",
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+ "180E1A",
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+ "450905",
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+ "B85D75",
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+ "BAAF62"
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+ ],
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+ "run_json_check": true,
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+ "n_reference_samples": 12,
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+ "n_mixture_samples": 12,
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+ "reference_cells": 128304,
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+ "states": 29,
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+ "states_merged_minor": 0,
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+ "types": [
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+ "B cell",
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+ "DC",
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+ "Monocyte",
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+ "NK cell",
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+ "Other",
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+ "T cell"
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+ ],
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+ "missing_types": [],
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+ "bp_axis_genes": 17988,
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+ "genes_kept": 15382,
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+ "genes_dropped_not_bulk_valid": 479,
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+ "genes_dropped_zero_reference": 2127,
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+ "aggregates_sha256": "6c0178da65a0929edf63875236d62080254279829c59603e489edeb64ae86e2f",
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+ "files": {
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+ "mixture.tsv.gz": "82b26e45a8d87cf7b1399d55179cbd5572e39f719a542383140c5264c44ca1c8"
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 1048
3
+ B cell|Memory B cell B cell 1606
4
+ B cell|Naive B cell B cell 2854
5
+ B cell|Plasma cell B cell 330
6
+ B cell|Transitional B cell B cell 990
7
+ DC|ASDC DC 31
8
+ DC|cDC1 DC 81
9
+ DC|cDC2 DC 1800
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+ DC|pDC DC 505
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+ Monocyte|CD14 monocyte Monocyte 11178
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+ Monocyte|CD16 monocyte Monocyte 3354
13
+ Monocyte|Intermediate monocyte Monocyte 7683
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+ NK cell|CD56bright NK cell NK cell 1691
15
+ NK cell|CD56dim NK cell NK cell 8024
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+ NK cell|Proliferating NK cell NK cell 3064
17
+ Other|Erythrocyte Other 3643
18
+ Other|ILC Other 1497
19
+ Other|Platelet Other 1050
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+ Other|Progenitor cell Other 84
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+ T cell|CD8aa T cell 4957
22
+ T cell|DN T cell T cell 9138
23
+ T cell|MAIT T cell 8469
24
+ T cell|Memory CD4 T cell T cell 12554
25
+ T cell|Memory CD8 T cell T cell 10694
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+ T cell|Naive CD4 T cell T cell 11533
27
+ T cell|Naive CD8 T cell T cell 11488
28
+ T cell|Proliferating T cell T cell 1080
29
+ T cell|Treg T cell 3792
30
+ T cell|gdT T cell 4086
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot3/SPLIT.json ADDED
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+ {
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+ "dataset": "giroux2022",
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+ "kind": "fewshot",
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+ "idx": 3,
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+ "reference": [
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+ "450905_d0",
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+ "450905_d14",
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+ "7085CA_d0",
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+ "7085CA_d7",
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+ "7085CA_d14",
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+ "B85D75_d0",
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+ "B85D75_d7",
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+ "180E1A_d0",
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+ "180E1A_d7",
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+ "180E1A_d14",
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+ "BAAF62_d0",
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+ "BAAF62_d7",
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+ "BAAF62_d14"
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+ ],
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+ "mixture": [
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+ "0B943B_d0",
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+ "0B943B_d14",
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+ "2AD75E_d0",
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+ "2AD75E_d7",
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+ "2AD75E_d14",
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+ "82CCF5_d0",
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+ "82CCF5_d7",
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+ "82CCF5_d14",
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+ "0BF51C_d0",
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+ "0BF51C_d7",
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+ "0BF51C_d14"
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+ ],
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+ "train_donors": [
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+ "180E1A",
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+ "450905",
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+ "7085CA",
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+ "B85D75",
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+ "BAAF62"
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+ ],
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+ "run_json_check": true,
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+ "n_reference_samples": 13,
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+ "n_mixture_samples": 11,
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+ "reference_cells": 135297,
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+ "states": 29,
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+ "states_merged_minor": 0,
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+ "types": [
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+ "B cell",
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+ "DC",
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+ "Monocyte",
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+ "NK cell",
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+ "Other",
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+ "T cell"
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+ ],
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+ "missing_types": [],
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+ "bp_axis_genes": 5556,
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+ "genes_kept": 5394,
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+ "genes_dropped_not_bulk_valid": 0,
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+ "genes_dropped_zero_reference": 162,
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+ "aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
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+ "files": {
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+ "reference.tsv.gz": "3ec76d9b02f05a1dc4fe11962aee6bccdcd6da51a9c9793243e403738bfe022c",
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+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
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+ }