Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2/state_types.tsv +30 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/SPLIT.json +68 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/state_types.tsv +30 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot3/SPLIT.json +67 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2/state_types.tsv
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| 1 |
+
state type n_cells
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| 2 |
+
B cell|Effector B cell B cell 1048
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| 3 |
+
B cell|Memory B cell B cell 1606
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| 4 |
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B cell|Naive B cell B cell 2854
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| 5 |
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B cell|Plasma cell B cell 330
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| 6 |
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B cell|Transitional B cell B cell 990
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| 7 |
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DC|ASDC DC 31
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| 8 |
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DC|cDC1 DC 81
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| 9 |
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DC|cDC2 DC 1800
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| 10 |
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DC|pDC DC 505
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| 11 |
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Monocyte|CD14 monocyte Monocyte 11178
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| 12 |
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Monocyte|CD16 monocyte Monocyte 3354
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| 13 |
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Monocyte|Intermediate monocyte Monocyte 7683
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| 14 |
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NK cell|CD56bright NK cell NK cell 1691
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| 15 |
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NK cell|CD56dim NK cell NK cell 8024
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| 16 |
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NK cell|Proliferating NK cell NK cell 3064
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| 17 |
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Other|Erythrocyte Other 3643
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| 18 |
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Other|ILC Other 1497
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| 19 |
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Other|Platelet Other 1050
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| 20 |
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Other|Progenitor cell Other 84
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| 21 |
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T cell|CD8aa T cell 4957
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| 22 |
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T cell|DN T cell T cell 9138
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| 23 |
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T cell|MAIT T cell 8469
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| 24 |
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T cell|Memory CD4 T cell T cell 12554
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| 25 |
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T cell|Memory CD8 T cell T cell 10694
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| 26 |
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T cell|Naive CD4 T cell T cell 11533
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| 27 |
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T cell|Naive CD8 T cell T cell 11488
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| 28 |
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T cell|Proliferating T cell T cell 1080
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| 29 |
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T cell|Treg T cell 3792
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| 30 |
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T cell|gdT T cell 4086
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/SPLIT.json
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{
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"dataset": "giroux2022",
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| 3 |
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"kind": "fewshot",
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| 4 |
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"idx": 2,
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| 5 |
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"reference": [
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"450905_d0",
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| 7 |
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"450905_d14",
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"0B943B_d0",
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"0B943B_d14",
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"B85D75_d0",
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"B85D75_d7",
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"180E1A_d0",
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"180E1A_d7",
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"180E1A_d14",
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"BAAF62_d0",
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"BAAF62_d7",
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"BAAF62_d14"
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],
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"mixture": [
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"7085CA_d0",
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"7085CA_d7",
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| 22 |
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"7085CA_d14",
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| 23 |
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"2AD75E_d0",
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| 24 |
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"2AD75E_d7",
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| 25 |
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"2AD75E_d14",
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| 26 |
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"82CCF5_d0",
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| 27 |
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"82CCF5_d7",
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| 28 |
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"82CCF5_d14",
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| 29 |
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"0BF51C_d0",
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| 30 |
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"0BF51C_d7",
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| 31 |
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"0BF51C_d14"
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| 32 |
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],
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| 33 |
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"train_donors": [
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| 34 |
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"0B943B",
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| 35 |
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"180E1A",
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| 36 |
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"450905",
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| 37 |
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"B85D75",
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| 38 |
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"BAAF62"
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],
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| 40 |
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"run_json_check": true,
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| 41 |
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"n_reference_samples": 12,
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| 42 |
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"n_mixture_samples": 12,
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| 43 |
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"reference_cells": 128304,
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| 44 |
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"states": 29,
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| 45 |
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"states_merged_minor": 0,
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| 46 |
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"types": [
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| 47 |
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"B cell",
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| 48 |
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"DC",
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| 49 |
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"Monocyte",
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| 50 |
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"NK cell",
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| 51 |
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"Other",
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| 52 |
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"T cell"
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| 53 |
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],
|
| 54 |
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"missing_types": [],
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| 55 |
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"bp_axis_genes": 17988,
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| 56 |
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"genes_kept": 15382,
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| 57 |
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"genes_dropped_not_bulk_valid": 479,
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| 58 |
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"genes_dropped_zero_reference": 2127,
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| 59 |
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"gene_mode": "full",
|
| 60 |
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"aggregates_sha256": "6c0178da65a0929edf63875236d62080254279829c59603e489edeb64ae86e2f",
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| 61 |
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"files": {
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| 62 |
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"reference.tsv.gz": "1a52c991e87e00e3a4a3223ab874b4506b2d1c9be9bff16b8863cc358a2cd9b7",
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| 63 |
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"state_types.tsv": "665b8d7717ad6807d7d91a240192fd29a53270f883f72c97b0ee405b64c9c4ad",
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| 64 |
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"mixture.tsv.gz": "82b26e45a8d87cf7b1399d55179cbd5572e39f719a542383140c5264c44ca1c8"
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| 65 |
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},
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| 66 |
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"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
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| 67 |
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"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
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| 68 |
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}
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot2_full/state_types.tsv
ADDED
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| 1 |
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state type n_cells
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| 2 |
+
B cell|Effector B cell B cell 1048
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| 3 |
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B cell|Memory B cell B cell 1606
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| 4 |
+
B cell|Naive B cell B cell 2854
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| 5 |
+
B cell|Plasma cell B cell 330
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| 6 |
+
B cell|Transitional B cell B cell 990
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| 7 |
+
DC|ASDC DC 31
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| 8 |
+
DC|cDC1 DC 81
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| 9 |
+
DC|cDC2 DC 1800
|
| 10 |
+
DC|pDC DC 505
|
| 11 |
+
Monocyte|CD14 monocyte Monocyte 11178
|
| 12 |
+
Monocyte|CD16 monocyte Monocyte 3354
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| 13 |
+
Monocyte|Intermediate monocyte Monocyte 7683
|
| 14 |
+
NK cell|CD56bright NK cell NK cell 1691
|
| 15 |
+
NK cell|CD56dim NK cell NK cell 8024
|
| 16 |
+
NK cell|Proliferating NK cell NK cell 3064
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| 17 |
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Other|Erythrocyte Other 3643
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| 18 |
+
Other|ILC Other 1497
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| 19 |
+
Other|Platelet Other 1050
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| 20 |
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Other|Progenitor cell Other 84
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| 21 |
+
T cell|CD8aa T cell 4957
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| 22 |
+
T cell|DN T cell T cell 9138
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| 23 |
+
T cell|MAIT T cell 8469
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| 24 |
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T cell|Memory CD4 T cell T cell 12554
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| 25 |
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T cell|Memory CD8 T cell T cell 10694
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| 26 |
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T cell|Naive CD4 T cell T cell 11533
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| 27 |
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T cell|Naive CD8 T cell T cell 11488
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| 28 |
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T cell|Proliferating T cell T cell 1080
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| 29 |
+
T cell|Treg T cell 3792
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| 30 |
+
T cell|gdT T cell 4086
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot3/SPLIT.json
ADDED
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| 1 |
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{
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| 2 |
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"dataset": "giroux2022",
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| 3 |
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"kind": "fewshot",
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| 4 |
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"idx": 3,
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| 5 |
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"reference": [
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| 6 |
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"450905_d0",
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| 7 |
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"450905_d14",
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| 8 |
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"7085CA_d0",
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| 9 |
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"7085CA_d7",
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| 10 |
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"7085CA_d14",
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| 11 |
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"B85D75_d0",
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| 12 |
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"B85D75_d7",
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| 13 |
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"180E1A_d0",
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| 14 |
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"180E1A_d7",
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| 15 |
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"180E1A_d14",
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| 16 |
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"BAAF62_d0",
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| 17 |
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"BAAF62_d7",
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| 18 |
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"BAAF62_d14"
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| 19 |
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],
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| 20 |
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"mixture": [
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| 21 |
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"0B943B_d0",
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| 22 |
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"0B943B_d14",
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| 23 |
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"2AD75E_d0",
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| 24 |
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"2AD75E_d7",
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| 25 |
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"2AD75E_d14",
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| 26 |
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"82CCF5_d0",
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| 27 |
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"82CCF5_d7",
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| 28 |
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"82CCF5_d14",
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| 29 |
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"0BF51C_d0",
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| 30 |
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"0BF51C_d7",
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| 31 |
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"0BF51C_d14"
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| 32 |
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],
|
| 33 |
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"train_donors": [
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| 34 |
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"180E1A",
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| 35 |
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"450905",
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| 36 |
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"7085CA",
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| 37 |
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"B85D75",
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| 38 |
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"BAAF62"
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| 39 |
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],
|
| 40 |
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"run_json_check": true,
|
| 41 |
+
"n_reference_samples": 13,
|
| 42 |
+
"n_mixture_samples": 11,
|
| 43 |
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"reference_cells": 135297,
|
| 44 |
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"states": 29,
|
| 45 |
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"states_merged_minor": 0,
|
| 46 |
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"types": [
|
| 47 |
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"B cell",
|
| 48 |
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"DC",
|
| 49 |
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"Monocyte",
|
| 50 |
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"NK cell",
|
| 51 |
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"Other",
|
| 52 |
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"T cell"
|
| 53 |
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],
|
| 54 |
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"missing_types": [],
|
| 55 |
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"bp_axis_genes": 5556,
|
| 56 |
+
"genes_kept": 5394,
|
| 57 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 58 |
+
"genes_dropped_zero_reference": 162,
|
| 59 |
+
"aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
|
| 60 |
+
"files": {
|
| 61 |
+
"reference.tsv.gz": "3ec76d9b02f05a1dc4fe11962aee6bccdcd6da51a9c9793243e403738bfe022c",
|
| 62 |
+
"state_types.tsv": "f55735648c429a14242b19a5320715c17a8815bb18f72bfb301dcff1f45313df",
|
| 63 |
+
"mixture.tsv.gz": "a10f0fbead9e81411f7ef1465db47be9c1a1d635fd8a05c4240a3f81463ffae5"
|
| 64 |
+
},
|
| 65 |
+
"tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
|
| 66 |
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"common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
|
| 67 |
+
}
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