Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zsk4_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.16772515988463088,0.13432782057065207,0.6666666666666666,0.3333333333333333,0.25,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.37099010626359963,0.12366336875453321,0.4127359901044159,-0.4375108220647841,0.7708678523976553,-0.11744307983660035,0.4528933996058621
+zsk4_raw_s13,BD,ifng_response_log2fc_high_vs_other,-2.114473102542327,-2.0536698044248207,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5492489261214322,0.1830829753738107,0.7864585639305159,-3.208703528024962,-1.5306392006017822,-2.5366632008398167,-1.692283004244837
+zsk4_raw_s13,BD,ifng_response_c1q_high_minus_other,0.08721175901847524,0.07223987582145147,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.05272705305404095,0.017575684351346984,0.06900085849037518,0.012031295532970332,0.17089349242761837,0.04668215822522594,0.12774135981172452
+zsk4_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.2980660293618522,-0.31556841048720397,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.19964161931080807,0.06654720643693603,0.27513607624019454,-0.6566899332101094,-0.03113952923786106,-0.451524162591712,-0.14460789613199246
+zsk4_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-1.897183385579788,-1.9361868342024242,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.34701789720295295,0.11567263240098431,0.4709434322857582,-2.324767386129027,-1.307320499107289,-2.163924954226409,-1.6304418169331667
+zsk4_raw_s13,BD,proinflammatory_c1q_high_minus_other,-0.019867472160028918,-0.0373695799595794,0.3333333333333333,-0.3333333333333333,0.09765625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.03382036155091898,0.011273453850306326,0.04518580576152048,-0.06166853449577092,0.030955825767311818,-0.045864103356868635,0.006129159036810796
+zsk4_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.28198360767968805,0.26343203765083684,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.15535196976432877,0.051783989921442924,0.21232204284617204,0.059665718544675325,0.5688079857187566,0.16256951278346982,0.4013977025759063
+zsk4_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-1.5687092063547656,-1.7334084586656484,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.40320735974374705,0.1344024532479157,0.7150916400213814,-2.1084938415193366,-1.0300272787491143,-1.878641819326044,-1.2587765933834874
+zsk4_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.1388298576614208,0.13250014942673716,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.05497050470646015,0.01832350156882005,0.044815886770641744,0.07208431948581262,0.22619331609468962,0.09657578727230176,0.18108392805053986
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.9075134891202221,1.9168615069548225,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.7274717073580133,0.24249056911933775,1.211337924248702,0.7775773542339515,2.995115349845032,1.3483292339830175,2.4666977442574267
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.014739298746360449,0.21132063189729358,0.6666666666666666,0.3333333333333333,0.8203125,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.7673567519405692,0.25578558398018975,1.0392826324377655,-1.28624671868008,0.8885817272545138,-0.6045819131302904,0.5751033156375694
+zsk4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.854578515769045,0.8355161042066042,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.21719961003256466,0.07239987001085489,0.36777946631826697,0.5933906303971372,1.1213599111058383,0.6876241161357695,1.0215329154023205
+zsk4_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.15379071900603233,0.15535661457181052,0.7,0.4,0.16015625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.2896591284645228,0.09159825910072031,0.4356115190994408,-0.32101766432812084,0.5212861539594564,-0.05341893891850796,0.36100037693057263
+zsk4_raw_s13,HC,ifng_response_log2fc_high_vs_other,-1.9699830956236468,-2.111957457492668,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.6605526347972536,0.2088850840384717,0.6187387584297606,-3.22721218197098,-0.7373625961926098,-2.4425139846829804,-1.4974522065643132
+zsk4_raw_s13,HC,ifng_response_c1q_high_minus_other,0.07774495852227012,0.0687812757543701,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04557379651354855,0.014411699860385414,0.06097573841087814,0.013253551588485901,0.150217155779378,0.04514342845500136,0.11034648858953888
+zsk4_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.3315471541993906,-0.3509873296748538,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.17212472391896694,0.0544306169211599,0.23287321246038317,-0.5096806570346362,-0.033487814899288156,-0.45467776414311767,-0.20841654425566358
+zsk4_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-1.8032201019538057,-1.8530022698802513,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.27219153950492553,0.08607452246632648,0.2857651099749763,-2.2027057196979087,-1.2300854536525252,-1.9979341994854412,-1.6085060044221702
+zsk4_raw_s13,HC,proinflammatory_c1q_high_minus_other,-0.01908910486392439,-0.01667205968201385,0.2,-0.6,0.130859375,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.04427257969283344,0.014000218972067144,0.041520752261767754,-0.07665820383940825,0.08160906773736709,-0.05075980049232939,0.012581590764480618
+zsk4_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,-0.019253062463837983,-0.014762250504501116,0.5,0.0,0.921875,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.22546297841406251,0.07129765398338153,0.22962093251933482,-0.37983767471034774,0.3556064456051484,-0.18053956111305247,0.1420334361853765
+zsk4_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.690528740097503,-1.6130868896649004,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.4503138179337714,0.1424017326517096,0.23736339840439857,-2.7177847139869566,-1.002887641674304,-2.012663839610443,-1.3683936405845631
+zsk4_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.08915291131715813,0.07789859307859454,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.03329327506413237,0.010528257996914675,0.049815163034307774,0.05064229408888743,0.1487089487147838,0.06533633707765012,0.11296948555666615
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.5773747430707405,0.8513177990787535,0.7,0.4,0.10546875,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,1.0062548988409188,0.31820573870396296,1.2617051287398164,-1.1089324454618918,1.8668970761985706,-0.14245664798192326,1.2972061341234045
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.8898130838811834,-0.6494949493642064,0.2,-0.6,0.048828125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,1.285380379544585,0.40647296590525933,0.9751933795530334,-3.7549306198419967,1.1069876614002412,-1.8093188151875963,0.02969264742522948
+zsk4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.4995764487381161,0.45372333471726756,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.16564010426949308,0.05238000013593789,0.2676638280204458,0.2900051056012165,0.7337145614873131,0.38108465624323323,0.618068241232999

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zsk4_raw_s13,BDU1,BD,generated,1394,7,0.005021520803443328,0.3460672081483855,0.31825859696756126,0.027808611180824228,0.25325671925019694,0.30164162332869576,-0.048384904078498825,0.7151559300724355,0.5977772157693072,0.1173787143031283,0.049643289472114785,-0.6566899332101094,0.059665718544675325,1.2730622875685882,-2.364633339584295,-2.324767386129027,-1.8430019197187448,-0.6823217510131845,1.7100468121501624,1.0093849599793998,0.7006618521707626,-1.336358992699243
+zsk4_raw_s13,BDU2,BD,generated,1118,5,0.004472271914132379,0.3108218909974823,0.298790595464512,0.012031295532970332,0.23698624102188046,0.274954713907718,-0.03796847288583752,0.716295646359888,0.5837954969331508,0.13250014942673716,-0.4375108220647841,-0.4512246196688086,0.3840532617650224,2.5867563749624978,-3.208703528024962,-2.281587928116586,-1.7949139861735952,0.21202939730727668,1.5546984408570368,0.9573125629221286,0.5973858779349082,-1.471876366264733
+zsk4_raw_s13,BDU3,BD,generated,1651,10,0.0060569351907934586,0.47320186296834815,0.3589434692095091,0.11425839375883906,0.34025754234695,0.3117957446966974,0.028461797650252585,0.8148329806209711,0.5953344579774383,0.21949852264353276,0.13432782057065207,-0.03113952923786106,0.32439863528455193,2.2200660577455444,-1.5806305040821225,-1.307320499107289,-1.109303615733004,0.8885817272545138,2.1001023352828927,0.9787424241770545,1.1213599111058383,-1.0135184400061819
+zsk4_raw_s13,BDV1,BD,generated,1809,14,0.007739082365948038,0.37859535768602387,0.3101120200681003,0.06848333761792358,0.24436188508997136,0.28499687739732626,-0.0406349923073549,0.635557785870654,0.527641677113198,0.10791610875745605,0.3130368107236464,-0.38295554795746584,0.40484159355437066,2.490378545186108,-1.5306392006017822,-1.7042649483810617,-1.1279102796973635,0.885825385066066,1.751042557817696,0.7831488710647729,0.9678936867529231,-1.0674319244811736
+zsk4_raw_s13,BDV2,BD,generated,1902,9,0.00473186119873817,0.3708307527309311,0.3134627410133574,0.057368011717573664,0.26330444927369695,0.2800536518586456,-0.016749202584948664,0.6314403845522456,0.5550214422280911,0.07641894232415447,-0.19535908371940908,-0.31556841048720397,0.17173121891885038,0.7775773542339515,-2.4495679106977093,-1.9361868342024242,-1.7334084586656484,-1.28624671868008,1.5177809375484592,0.924390307151322,0.5933906303971372,-1.2899079882168714
+zsk4_raw_s13,BDV3,BD,generated,1354,8,0.005908419497784343,0.4745409868601017,0.3390870439589741,0.1354539429011276,0.2519871916120255,0.2893567715716049,-0.0373695799595794,0.7016432341347016,0.629558914648889,0.07208431948581262,0.7708678523976553,-0.36655810913501313,0.15860181469897655,1.2790406209374061,-1.8357819192508582,-2.17520838066682,-1.9433629311525293,-0.8804657304243081,1.7570936741530552,1.0590770754218386,0.6980165987312166,-1.4553793433675664
+zsk4_raw_s13,BDV4,BD,generated,1186,4,0.003372681281618887,0.49604038906780323,0.32514689664018487,0.17089349242761837,0.31943631930219996,0.28848049353488814,0.030955825767311818,0.7579956123963247,0.6132489620071463,0.14474665038917844,0.5103401140192789,-0.1078194717172713,0.26343203765083684,2.995115349845032,-2.3965451400724547,-2.040374261463106,-2.1084938415193366,0.356960881424581,2.1410671314657255,1.0298812158931947,1.1111859155725308,-1.5552671776137246
+zsk4_raw_s13,BDV5,BD,generated,2140,10,0.004672897196261682,0.4452725381324839,0.31890366792453506,0.12636887020794885,0.32018017879096083,0.31562936533679525,0.004550813454165581,0.7563326415521733,0.5301393254574837,0.22619331609468962,0.3884582238334697,-0.08112077795466807,0.5688079857187566,1.9168615069548225,-1.6100865761419387,-1.5330366045320587,-1.0300272787491143,0.21132063189729358,1.844434442247092,0.7786383771976084,1.0657960650494835,-1.1154981280652945
+zsk4_raw_s13,BDV6,BD,generated,2107,9,0.004271476032273375,0.4446529367498535,0.37241306092840204,0.07223987582145147,0.27509025654074104,0.33675879103651196,-0.06166853449577092,0.777445130991706,0.6247131354636082,0.1527319955280978,-0.024277766270946223,-0.2895178648882692,0.20232020298115175,1.62876330464805,-2.0536698044248207,-1.771903627619721,-1.4279605457835567,0.16166248845059727,1.883086021120602,1.0475699169139978,0.8355161042066042,-1.1709483378191226
+zsk4_raw_s13,HC1,HC,generated,1475,10,0.006779661016949152,0.398570318550595,0.3853167669621091,0.013253551588485901,0.2921339669464523,0.3370906956828329,-0.044956728736380625,0.742880336647699,0.6828865341768648,0.05999380247083419,-0.32101766432812084,-0.49551171292198043,-0.1170343393526152,-0.22177999194589343,-2.17764957604881,-1.8567420200350528,-1.6261550420350266,-1.5052755697284526,1.5429949792811333,1.2529898736799168,0.2900051056012165,-1.1235124382514456
+zsk4_raw_s13,HC10,HC,generated,1188,14,0.011784511784511785,0.586755144684564,0.436537988905186,0.150217155779378,0.3492871176752971,0.35304917213284387,-0.003762054457546793,0.7848004839273155,0.724171146567744,0.060629337359571545,0.5212861539594564,-0.23137377770380418,-0.37983767471034774,0.2668401414555901,-0.7373625961926098,-1.2300854536525252,-1.417187364848111,-0.5715830558370163,1.6934809095429773,1.3186049084716376,0.37487600107133967,-0.8388103495639162
+zsk4_raw_s13,HC2,HC,generated,1238,9,0.007269789983844911,0.4042205413850589,0.3820339586118509,0.022186582773208008,0.2617322590054978,0.33839046284490604,-0.07665820383940825,0.7555756381014427,0.6767492770044534,0.07882636109698926,-0.18825598331782428,-0.45875551395402786,0.000755291202106026,0.6866808747043143,-2.2486275374864717,-1.9277452876381846,-1.600018737294774,-0.7274068428913966,1.8558328537996667,1.188679774536532,0.6671530792631346,-1.2097646859858369
+zsk4_raw_s13,HC3,HC,generated,805,6,0.007453416149068323,0.4807640078719992,0.37865194766428306,0.10211206020771613,0.2984680420590729,0.30730366744886084,-0.008835625389787938,0.7536458774492426,0.6832486834030386,0.07039719404620404,0.3059209892108367,-0.31728100947036725,0.09288052476073852,1.160060621251468,-2.0752782166179866,-1.8492625197254497,-1.7147199811566762,-0.5566808288626387,1.8526823558010876,1.261725146551034,0.5909572092500537,-1.3355010568803753
+zsk4_raw_s13,HC4,HC,generated,1531,16,0.010450685826257348,0.4540097646464738,0.3958796713487254,0.058130093297748375,0.2747129770298902,0.3217956667209298,-0.04708268969103957,0.7408519937604486,0.6902096996715612,0.05064229408888743,-0.06718396740472349,-0.4929973442717619,-0.3172392240887919,-0.7445177486636144,-1.4907414950582814,-1.5737956165999023,-1.5267880516610435,-1.6265285971906278,1.6395742656823185,1.2424411339386632,0.3971331317436553,-0.9211842915161667
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_D/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/zsk4_raw_s13/rule_D/sample.csv

@@ -0,0 +1,20 @@
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