Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.23401998752260406,0.26327332059569714,0.8888888888888888,0.7777777777777778,0.01171875,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.18627319105501194,0.06209106368500398,0.1625135202503871,-0.08998461605467363,0.540149736612625,0.09083773790575966,0.37720223713944845
+zs_raw_s04,BD,ifng_response_log2fc_high_vs_other,-0.814941223109676,-0.7359036512300702,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.27820499283047684,0.09273499761015895,0.27612842810588534,-1.3654565836447337,-0.5056293159494558,-1.0287885110768509,-0.601093935142501
+zs_raw_s04,BD,ifng_response_c1q_high_minus_other,0.07281075662907502,0.08409773743062016,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.025389752037976557,0.00846325067932552,0.04097387491204335,0.036586874792371826,0.11133595232655435,0.053294465565280905,0.09232704769286913
+zs_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.17384543332460098,-0.16513059329575278,0.1111111111111111,-0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.12666448047289008,0.04222149349096336,0.11810559216743179,-0.3904851262101433,0.04133960697953961,-0.2712083719092583,-0.0764824947399437
+zs_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-0.9860337258119982,-1.0097279503834917,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.16234824215320434,0.05411608071773478,0.12653723023582308,-1.1522717114282186,-0.6726872031372397,-1.110825631728137,-0.8612418198958594
+zs_raw_s04,BD,proinflammatory_c1q_high_minus_other,-0.0288797348736854,-0.03224426210700637,0.0,-1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.015950991817040107,0.005316997272346702,0.01397184183246769,-0.05051957708413765,-0.004597473681252073,-0.041140752570586164,-0.016618717176784634
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.16841426211930158,0.27204392321081133,0.8888888888888888,0.7777777777777778,0.02734375,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.16052232888068343,0.05350744296022781,0.18098398534099475,-0.1484600499794197,0.3011510200391972,0.04502587738881522,0.29180264684978796
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.6798210804075056,-0.647388340917946,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.23820179928724985,0.07940059976241662,0.07145249551835597,-1.1561936436758697,-0.30318303106373323,-0.8629191917973291,-0.4967229690176819
+zs_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.108005298950281,0.1268674091176084,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.04300360092541227,0.01433453364180409,0.07186910710279781,0.0475288988636956,0.16378990632643065,0.07494980509605755,0.14106079280450445
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.4407985369789216,1.299703337099587,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.337009810980931,0.11233660366031034,0.49865298502343536,1.1067400882302374,2.0135306736154264,1.1817498644034545,1.6998472095543886
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.6166064785576617,0.536728313228368,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.3442021164390639,0.1147340388130213,0.4822142547715751,0.2465081466721289,1.2102510806996996,0.35202931060615933,0.881183646509164
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7461890867812916,0.7703257420398887,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.11542895104511383,0.038476317015037946,0.14757387806953837,0.5732144259331264,0.9372357539755032,0.6574625406371877,0.8349156329253955
+zs_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.14487564159592853,0.17741000117219363,0.6,0.2,0.130859375,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.22761376332496805,0.07197779189093992,0.3747561376203448,-0.2707264057245928,0.40075247349430526,-0.017949435892559762,0.3077007190844168
+zs_raw_s04,HC,ifng_response_log2fc_high_vs_other,-0.9408684462228273,-0.8346928765092463,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5509820388130001,0.1742358192492377,0.28674961120029774,-2.327608674323641,-0.24635247470461982,-1.3350172527535036,-0.5467196396921509
+zs_raw_s04,HC,ifng_response_c1q_high_minus_other,0.07121502785743376,0.07667871364937953,0.9,0.8,0.00390625,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04666259897701487,0.014756009431040999,0.06201646750068221,-0.02650283154566252,0.12202333729684123,0.037834615428686505,0.10459544028618102
+zs_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.3101525181687741,-0.31898396835220694,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.1320079985131105,0.041744594466155,0.16787321294571134,-0.5135740330229221,-0.11850903879966168,-0.40458535154849296,-0.21571968478905526
+zs_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-1.1437764235062087,-0.9877253287142643,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.4151332677233175,0.13127666585141456,0.484878311827341,-2.071901692752545,-0.7104947323122026,-1.4407448734702526,-0.8468079735421647
+zs_raw_s04,HC,proinflammatory_c1q_high_minus_other,-0.03462144860517605,-0.034567242327046194,0.0,-1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.020669125403127785,0.0065361513517529736,0.012276922466570403,-0.07491633196076947,-0.005524845629334585,-0.04940725020267721,-0.019835647007674886
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.01615584915595302,0.03288574416378638,0.6,0.2,0.845703125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.21415474671993995,0.06772167713714836,0.3448210816794866,-0.2904684232871437,0.29981614253589184,-0.13704122785655456,0.16935292616846062
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.8569674244006873,-0.764305480594468,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.5160009772172693,0.16317383628792237,0.4276325754203971,-2.054748721204995,-0.29891796144170557,-1.2260922869406725,-0.4878425618607021
+zs_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.07468806156947738,0.07645381800566653,0.9,0.8,0.005859375,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.05571103891343006,0.017617377378071113,0.05838100664695936,-0.03862662397667771,0.14747128782475794,0.03483478514395476,0.114541337995
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1393173050803171,1.2363673693655723,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3779301253262041,0.1195119992423691,0.5124433932407446,0.4147688999087813,1.6399340526354682,0.8689623799538582,1.4096722302067761
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.38588302437480115,0.4243966764214775,0.7,0.4,0.064453125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.5582920351112415,0.17654744304822192,0.825451962973365,-0.4092407302371384,1.3159136565290972,-0.013495038490442202,0.7852610872400445
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5693602344393982,0.5799592818881256,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.19533552877199084,0.06177051788728443,0.300263832592366,0.20040027209884448,0.8061506515519341,0.4296256149509231,0.7090948539278733

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_raw_s04,BDU1,BD,generated,1310,24,0.0183206106870229,0.3607719881721308,0.3127039326228592,0.04806805554927157,0.25513762166643755,0.2985233462078429,-0.043385724541405324,0.6411196380604479,0.5935907391967523,0.0475288988636956,-0.08998461605467363,-0.14011169238625049,-0.1484600499794197,1.299703337099587,-1.3654565836447337,-1.0871798183395511,-1.1561936436758697,0.2465081466721289,1.6355619172562612,1.0069032440958914,0.6286586731603698,-0.7669084594630873
+zs_raw_s04,BDU2,BD,generated,997,31,0.031093279839518557,0.327512511034588,0.2909256362422162,0.036586874792371826,0.22370214058275992,0.27422171766689757,-0.05051957708413765,0.6580070633057867,0.5892794285886254,0.06872763471716137,0.15891126563105082,-0.16513059329575278,0.3011510200391972,1.8546356344535986,-1.1171404643697584,-0.9942951176253134,-0.641559920483225,0.8534350454619554,1.6728816539062212,0.9679882196784638,0.7048934342277574,-0.6999831379618037
+zs_raw_s04,BDU3,BD,generated,1619,42,0.025941939468807906,0.44811107197086436,0.35906914150954944,0.08904193046131492,0.31376395796993295,0.318361431651185,-0.004597473681252073,0.7259341133351637,0.5974822271155232,0.12845188621964043,0.1651554475246597,-0.05970081184407638,0.27461020716654844,1.7481543540257123,-0.5056293159494558,-0.6726872031372397,-0.30318303106373323,1.2102510806996996,1.8548313083108192,0.9976794616493547,0.8571518466614645,-0.47282803777856713
+zs_raw_s04,BDV1,BD,generated,1909,31,0.016238868517548456,0.42243458470225986,0.3110986323757055,0.11133595232655435,0.280825468600125,0.2856665070583351,-0.004841038458210101,0.6962459878254736,0.532456081499043,0.16378990632643065,0.26327332059569714,-0.23477865346078733,0.11179230415795266,1.302633912828582,-0.6681938196607667,-0.9745232477278704,-0.6706160537792342,0.536728313228368,1.5998446218155886,0.8295188797756999,0.7703257420398887,-0.5781708821264868
+zs_raw_s04,BDV2,BD,generated,1904,37,0.019432773109243698,0.40769001811742955,0.3235922806868094,0.08409773743062016,0.25014272510182833,0.28727301063868954,-0.03713028553686121,0.7172016263557278,0.5766048845357686,0.14059674181995918,0.4110945419758167,-0.2844034449424043,0.27204392321081133,1.1067400882302374,-0.5707804212565918,-1.1010604779636934,-0.5383126546577446,0.3712207906903803,1.7771120333380885,1.0051221673428474,0.7719898659952411,-0.6493723487161904
+zs_raw_s04,BDV3,BD,generated,1331,30,0.022539444027047332,0.4037333626579951,0.31542973951362346,0.08830362314437162,0.2513699314058772,0.28884688176778955,-0.03747695036191234,0.6691120761339113,0.6141224326204404,0.05498964351347091,0.2679677380872389,-0.11667306129335554,0.0014818142461581704,1.2592117104038065,-0.9111972912407016,-1.0097279503834917,-0.9142794504649049,0.38257382717073657,1.5680578006885717,0.9948433747554453,0.5732144259331264,-0.7460458986276329
+zs_raw_s04,BDV4,BD,generated,1173,32,0.027280477408354646,0.3598078950020321,0.3128163494717349,0.04699154553029716,0.25976068329041,0.2832657918198547,-0.02350510852944465,0.7033456873873206,0.610375912957698,0.09296977442962262,0.3214247858814379,0.04133960697953961,0.2927762894989474,1.249501369002277,-0.8251005975001892,-0.7727490522036766,-0.647388340917946,0.3315805805798234,1.6953112995947581,1.0329822191103903,0.6623290804843678,-0.6874506963535205
+zs_raw_s04,BDV5,BD,generated,2186,26,0.011893870082342177,0.39972196492492607,0.30950014316209434,0.09022182176283172,0.2824462559071497,0.30866344947008856,-0.026217193562938834,0.6696633346452525,0.5215375391003126,0.14812579554493988,0.540149736612625,-0.21466512346817826,0.2969663094725595,2.0135306736154264,-0.6350688631348163,-1.1522717114282186,-0.6476930703640134,1.059590966848383,1.7125023142301694,0.7752665602546662,0.9372357539755032,-0.6873787345490632
+zs_raw_s04,BDV6,BD,generated,2197,41,0.018661811561219845,0.44211130459600256,0.38146203593196076,0.0606492686640418,0.3090912569914892,0.3413355190984956,-0.03224426210700637,0.7636063953719564,0.636738986254348,0.1268674091176084,0.06818766744958414,-0.3904851262101433,0.11336654126095952,1.133075753151067,-0.7359036512300702,-1.1098089534989284,-0.5991635582608782,0.5575695556674813,1.9030327367352438,1.0931297781813376,0.8099029585539061,-0.5823963076688841
+zs_raw_s04,HC1,HC,generated,1527,53,0.03470857891290111,0.40987224387525595,0.38021856188444425,0.029653681990811698,0.2922387877794551,0.3323067872763234,-0.04006799949686829,0.7367974013908404,0.6828289968279732,0.05396840456286722,-0.0600450069292593,-0.3072391731883271,-0.25261695925712657,0.9149179925994994,-0.6990589310643712,-0.8804412412392822,-0.7946293363746924,0.4814390747504619,1.7852118326213458,1.2546251139197897,0.530586718701556,-0.4648374527504042
+zs_raw_s04,HC10,HC,generated,1132,27,0.023851590106007067,0.5017528808446022,0.4137428139604563,0.08801006688414592,0.3115735056353341,0.34561882903588237,-0.03404532340054828,0.7769376305810776,0.7102319095864367,0.0667057209946409,-0.008330532692158887,-0.24397149295402626,-0.06900050986839185,1.4415749185081468,-0.7810326673981479,-0.8454518046806458,-0.6807087232541355,0.9318758286331922,1.8903312208131806,1.2732717468220953,0.6170594739910853,-0.5495531518339846
+zs_raw_s04,HC2,HC,generated,1120,20,0.017857142857142856,0.4695691809815365,0.36736975515750675,0.10219942582402974,0.2742407291509119,0.3305115942712117,-0.05627086512029977,0.7924686320436007,0.6661943786709876,0.1262742533726131,0.40075247349430526,-0.4330917977960237,0.27468550013697385,1.4590577896936971,-0.8850555202918783,-1.3940681102477186,-0.7339816248142438,0.5304817252896592,1.9792950750240217,1.1731444234720876,0.8061506515519341,-0.7820472943032498
+zs_raw_s04,HC3,HC,generated,776,25,0.03221649484536082,0.41840429591825395,0.37247461245547353,0.045929683462780424,0.27334568263884296,0.30843484389238707,-0.03508916125354411,0.6996830897248344,0.6852116521917557,0.014471437533078668,-0.028027755618514803,-0.33072876351608677,-0.2904684232871437,0.7851928555532753,-1.1671810494682429,-1.2021954405337645,-1.268444730707769,-0.09233131978427601,1.6801517768199736,1.289858512434086,0.39029326438588763,-0.7270905633114267
+zs_raw_s04,HC4,HC,generated,1551,53,0.03417150225660864,0.5139017287960962,0.39187839149925496,0.12202333729684123,0.29009502657791075,0.3263645538760281,-0.03626952729811733,0.7921423666195431,0.6876470981968421,0.10449526842270096,0.3602555970078615,-0.34986717505314746,0.19564834212746174,1.6399340526354682,-0.24635247470461982,-0.8548150942427578,-0.29891796144170557,1.3159136565290972,2.005579707665279,1.2364967027867533,0.7690830048785255,-0.4488148766215087
+zs_raw_s04,HC5,HC,generated,895,32,0.035754189944134075,0.5589776012907524,0.4450053125235689,0.11397228876718346,0.307869729010278,0.3400750197244581,-0.0322052907141801,0.8383987444602328,0.7191855135107731,0.11921323094945968,0.17982039732196425,-0.11942946914131491,0.29981614253589184,1.3587355548893765,-0.5450482104158693,-0.7104947323122026,-0.31995857257480054,0.8777664558987034,2.003863608645826,1.3510495104423976,0.6528140982034285,-0.5218134402209819
+zs_raw_s04,HC6,HC,generated,366,9,0.02459016393442623,0.32673771087385056,0.3532405424195131,-0.02650283154566252,0.23240440926329164,0.3073207412240611,-0.07491633196076947,0.6232349295491115,0.6618615535257892,-0.03862662397667771,0.17499960502242298,-0.4393790004199361,-0.19640396990571932,1.3344515761011497,-2.327608674323641,-2.071901692752545,-2.054748721204995,-0.4092407302371384,1.4079442141151581,1.2075439420163137,0.20040027209884448,-1.2901255518442145
+zs_raw_s04,HC7,HC,generated,971,20,0.02059732234809475,0.43563147366557803,0.3702841132509649,0.06534736041461314,0.2939835207450435,0.3190370358144637,-0.025053515069420162,0.7516396796740579,0.6835065498570594,0.06813312981699848,0.35327635342820957,-0.11850903879966168,0.02678205062597054,0.4147688999087813,-0.7843302327266143,-1.0779042837279937,-0.8559481583925764,-0.2833959258693188,1.6762875270273043,1.2668138391046426,0.4094736879226617,-0.7516848133654126
+zs_raw_s04,HC8,HC,generated,1124,37,0.03291814946619217,0.4382479968901824,0.3805239214222466,0.05772407546793579,0.2942666570124437,0.3010382831211221,-0.006771626108678375,0.7515777219393305,0.6668032157449959,0.08477450619433458,-0.2707264057245928,-0.24573523779629436,0.13412688075001147,0.9062562482837796,-1.0260956017787821,-0.8975463737005349,-0.525286396530453,0.36735427809249305,1.8130337724673826,1.2701746826822167,0.542859089785166,-0.5153553810660744
+zs_raw_s04,HC9,HC,generated,550,16,0.02909090909090909,0.4340290398132699,0.3202358498016112,0.11379319001165872,0.2845386979381215,0.29006354356745606,-0.005524845629334585,0.7747341163243183,0.6272628284995604,0.14747128782475794,0.34678169064904735,-0.5135740330229221,0.038989437701602216,1.1382831626299952,-0.9469211000561059,-1.5029454616246407,-1.0370500187115022,0.13896720044513772,1.86338336988631,1.0885012870114177,0.7748820828748924,-0.7863824508180072

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.1294306544745201,0.0415292600339017,0.5714285714285714,0.14285714285714285,0.46875,7,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3636451082072875,0.13744493168595082,0.4790884602146486,-0.25221847969628036,0.7564362898038389,-0.20688497774764505,0.4657462866966853
+zs_raw_s04,BD,ifng_response_log2fc_high_vs_other,-3.879637658528766,-3.7970556892224896,0.0,-1.0,0.015625,7,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.7343877564069098,0.27757248133476636,0.7515152103498286,-5.198893047189673,-3.1074883671976674,-4.558833052658525,-3.2004422643990074
+zs_raw_s04,BD,ifng_response_c1q_high_minus_other,0.07169778798559008,0.06078731085616368,0.7142857142857143,0.42857142857142855,0.21875,7,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.1146180981131366,0.04332156905065158,0.15107973650094228,-0.0773298595272974,0.22681988432780759,-0.034306272734644816,0.17770184870582498
+zs_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.1436462677179521,-0.13454408029270845,0.42857142857142855,-0.14285714285714285,0.21875,7,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.25348628472323476,0.09580881002048434,0.3826293545789291,-0.48874497213693807,0.13261762820036935,-0.37808198040117313,0.09078944496526889
+zs_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-2.8179323889649335,-2.8363423615333385,0.0,-1.0,0.015625,7,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.5281954092407778,0.19963909949958367,0.44105346638714593,-3.645926127171384,-2.0183262376578583,-3.3064316674823764,-2.3294331104474906
+zs_raw_s04,BD,proinflammatory_c1q_high_minus_other,-0.014357313558891546,-0.013446107963333398,0.42857142857142855,-0.14285714285714285,0.6875,7,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.07729212972020515,0.029213679077458168,0.1079751136148212,-0.12382268730731669,0.08714136949869117,-0.08584061110907006,0.05712598399128697
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.5106579212715837,0.544113162841123,1.0,1.0,0.015625,7,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.2105726459204383,0.07958897914547707,0.219197716899926,0.21456658750786384,0.8400378196974054,0.3159107049799853,0.7054051375631821
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-2.8904110068623114,-2.8529089869795716,0.0,-1.0,0.015625,7,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.8101149120490392,0.30619465580953154,0.9823308114443448,-4.223786949383126,-1.8326401195317896,-3.639642338919912,-2.141179674804711
+zs_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.13354714707125742,0.1448749196871807,1.0,1.0,0.015625,7,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.08902062480930997,0.03364663354300298,0.12494474990389653,0.00014637116054061483,0.24525605809643547,0.051216800703751245,0.2158774934387636
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,2.089998841317617,2.3700583212030564,1.0,1.0,0.015625,7,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.9215017922180759,0.34829493927276345,1.1691294162781272,0.4552938965111333,3.0232684537207635,1.2377518267172711,2.942245855917963
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-1.8985867380691215,-1.042469346304735,0.0,-1.0,0.015625,7,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,1.6000812950561336,0.6047738834578134,2.423823198707947,-4.36664339498153,-0.3500100854869446,-3.378415120765018,-0.41875835537322526
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.8148067202298126,0.7852953479109068,1.0,1.0,0.015625,7,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.362067201486025,0.13684853900359112,0.5913212565642424,0.37777567132699685,1.3077901974236126,0.47995040833004954,1.1496630321295758
+zs_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.17400371809882356,0.19404169805389174,0.5,0.0,0.4375,6,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3652227250453815,0.1491015531383305,0.5493635813535624,-0.3243644319020436,0.5642306552891133,-0.2092740260637316,0.5572814622613788
+zs_raw_s04,HC,ifng_response_log2fc_high_vs_other,-3.225734534766565,-3.2536084107279875,0.0,-1.0,0.03125,6,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.7949838500366044,0.32455079772382384,0.8127981607671817,-4.386917107939847,-2.1166182214178972,-4.060018920136702,-2.3914501493964275
+zs_raw_s04,HC,ifng_response_c1q_high_minus_other,0.08142891968434615,0.07161911226087844,0.6666666666666666,0.3333333333333333,0.21875,6,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.11943488767071339,0.048759088713312256,0.1432489858811896,-0.08151728896452565,0.2474936555145985,-0.043910308084273986,0.2067681474529663
+zs_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.18315607148721483,-0.24446040920283962,0.16666666666666666,-0.6666666666666666,0.21875,6,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.2711166054915641,0.11068289070829662,0.1843392360238727,-0.5351886834824782,0.27346231118219017,-0.46767549985768153,0.1013633568832519
+zs_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-2.473542297145984,-2.451751704860997,0.0,-1.0,0.03125,6,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.5216424736084412,0.2129596480839869,0.8680895365418975,-3.1119782883628724,-1.9495189950786567,-3.0209725002341825,-1.9261120940577854
+zs_raw_s04,HC,proinflammatory_c1q_high_minus_other,-0.0263514631112536,-0.02013272799948948,0.3333333333333333,-0.3333333333333333,0.21875,6,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.03785646171612928,0.015454835778620458,0.04228154933203819,-0.09084843904402667,0.010675756407998005,-0.06607938323651756,0.013376457014010367
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.23330682785301693,0.2660157443432093,0.8333333333333334,0.6666666666666666,0.09375,6,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.24682295711465158,0.10076505028929189,0.24563732340878042,-0.1905398697288432,0.49790893121821145,-0.025717980087616554,0.4923316357936504
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-2.5209570841588103,-2.218354149975564,0.0,-1.0,0.03125,6,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.8985216259925324,0.3668199177562619,0.9004986527892711,-4.112771219629254,-1.711589842880146,-3.4638977016926638,-1.5780164666249568
+zs_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.0838447808467953,0.12702319082632219,0.8333333333333334,0.6666666666666666,0.4375,6,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.17560690219979957,0.07169121761672297,0.08810169973365414,-0.25674476795389495,0.2346425786933034,-0.10044336093340293,0.2681329226269935
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.4925625611522626,1.2929481849234714,1.0,1.0,0.03125,6,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.8271385195297039,0.3376778865748122,1.0395495182394505,0.6573199780421374,2.795696429563766,0.6245339196269907,2.3605912026775346
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-1.3804531759289012,-1.2577068544977497,0.16666666666666666,-0.6666666666666666,0.09375,6,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,1.7454864681390116,0.7125918666455576,1.1078229112895448,-4.176645295575473,1.1339924818333318,-3.2122288845501465,0.45132253269234424
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6169578611126493,0.6627809415148703,0.8333333333333334,0.6666666666666666,0.0625,6,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.5780004433743091,0.23596769289491656,0.4865381763783835,-0.3838747406002947,1.2731563455913866,0.010383595959968517,1.22353212626533

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_B/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_raw_s04,BDU1,BD,generated,1310,0,0.0,,0.31358456875505963,,,0.2977284932391454,,,0.594461497649217,,,,,,,,,,,1.0184206549018828,,
+zs_raw_s04,BDU2,BD,generated,997,2,0.0020060180541624875,0.4798534402333959,0.29168577444380533,0.18816766578959054,0.3020985756107244,0.2725917070081077,0.029506868602616698,0.8084221775791907,0.5909802036421439,0.21744197393704678,0.7564362898038389,0.13261762820036935,0.8400378196974054,3.0232684537207635,-3.1074883671976674,-2.370691493866478,-2.3823244236497216,-0.7465562511002828,2.1018991754592338,0.9876705056578599,1.114228669801374,-1.9326271924187994
+zs_raw_s04,BDU3,BD,generated,1619,3,0.0018529956763434219,0.46989327306286915,0.36117761223028905,0.10871566083258011,0.40522206118501597,0.3180806916863248,0.08714136949869117,0.8456161178536731,0.6003600597572376,0.24525605809643547,-0.25221847969628036,0.1010392845057177,0.577306172218823,2.3700583212030564,-3.1980934370858964,-2.0183262376578583,-1.8326401195317896,-0.3500100854869446,2.1113749183052484,1.0178894190687942,1.0934854992364542,-1.5791800221835217
+zs_raw_s04,BDV1,BD,generated,1909,1,0.0005238344683080147,0.2356172507853649,0.3129471103126623,-0.0773298595272974,0.16183006935557717,0.28565275666289386,-0.12382268730731669,0.5352621387386611,0.5351157675781205,0.00014637116054061483,-0.07483154906582305,-0.1789924441963709,0.47982885844175,1.5341326741529906,-5.198893047189673,-3.645926127171384,-4.223786949383126,-4.36664339498153,1.2196058776254362,0.8418302062984393,0.37777567132699685,-2.454071512867718
+zs_raw_s04,BDV2,BD,generated,1904,2,0.0010504201680672268,0.38594999157617715,0.3251626807200135,0.06078731085616368,0.19173930202322487,0.2866511635579151,-0.09491186153469022,0.7589273417541271,0.5791482255099548,0.1797791162441723,0.33408506546491346,-0.461063135280752,0.6298354841084498,2.938503767791607,-3.7970556892224896,-3.201575949726925,-2.8529089869795716,-1.042469346304735,2.3265405394760066,1.018750342052394,1.3077901974236126,-2.0970351522026682
+zs_raw_s04,BDV3,BD,generated,1331,3,0.002253944402704733,0.3714292931143002,0.31729804526176286,0.05413124785253731,0.24983824917393638,0.2880883858242083,-0.03825013665027194,0.7087887652396455,0.6151508138761229,0.0936379513635226,0.0415292600339017,-0.48874497213693807,0.544113162841123,2.6213112573807043,-3.5774046056100417,-2.8363423615333385,-2.29711526097678,-0.5951127200470898,1.5474122970504036,1.0065442226553767,0.5408680743950269,-1.8655113912306835
+zs_raw_s04,BDV4,BD,generated,1173,1,0.0008525149190110827,0.5407248182604476,0.31390493393264,0.22681988432780759,0.3358604985250177,0.28257913808295415,0.05328136044206355,0.7576635844454419,0.6127886647582612,0.1448749196871807,0.3251371503398255,-0.13454408029270845,0.21456658750786384,1.687423518463066,-3.8215978097674497,-2.8519435148561976,-3.4905181298508965,-2.7398052992778084,1.8356767445384234,1.0503813966275166,0.7852953479109068,-2.12485596104488
+zs_raw_s04,BDV5,BD,generated,2186,0,0.0,,0.3105732297887337,,,0.3083516255759274,,,0.5232993280683678,,,,,,,,,,,0.7864139205489769,,
+zs_raw_s04,BDV6,BD,generated,2197,2,0.0009103322712790169,0.32324054739096597,0.3826479416232172,-0.05940739423225122,0.3272999152177927,0.3407460231811261,-0.013446107963333398,0.6927513218941114,0.639057682884208,0.05369363900990343,-0.22412315555873524,0.024163845175017698,0.28891736408567076,0.4552938965111333,-4.456930653628145,-2.800721037942353,-3.153583177664295,-3.4495100692854583,1.59200682994494,1.1078032484306233,0.48420358151431664,-2.117707408284704
+zs_raw_s04,HC1,HC,generated,1527,4,0.0026195153896529143,0.3802388260990356,0.3812504490076581,-0.0010116229086225004,0.2876671446152587,0.3310296727637234,-0.043362528148464696,0.7700080676054996,0.6844781164331748,0.08552995117232476,-0.3243644319020436,-0.5351886834824782,0.30732212448404833,0.7718825092138587,-3.5594696739647853,-2.805409170026948,-2.389075158101646,-2.0902180929488434,1.7484050597173346,1.2717925310622664,0.4766125286550682,-1.7637357654991597
+zs_raw_s04,HC10,HC,generated,1132,3,0.00265017667844523,0.4728848185122934,0.4156904187365559,0.05719439977573754,0.3554542577044469,0.3447785012964489,0.010675756407998005,0.8969256302921473,0.7113310887757531,0.1855945415163942,-0.08861927797791559,-0.060148864184605584,0.4302096306967313,1.3130008648528544,-2.947747147491189,-1.9495189950786567,-1.711589842880146,-0.6344344398869235,2.1211151618245716,1.2857757995703252,0.8353393622542464,-1.5788062673805714
+zs_raw_s04,HC2,HC,generated,1120,0,0.0,,0.3691947449043644,,,0.3295067573940635,,,0.6684492760526415,,,,,,,,,,,1.1875399708212289,,
+zs_raw_s04,HC3,HC,generated,776,2,0.002577319587628866,0.29264711300705426,0.3741644019715799,-0.08151728896452565,0.2166901005271612,0.3075385395711879,-0.09084843904402667,0.4295948165500189,0.6863395845039139,-0.25674476795389495,-0.014718597072354189,-0.21776920192725976,-0.1905398697288432,0.6573199780421374,-4.386917107939847,-3.1119782883628724,-4.112771219629254,-4.176645295575473,0.9195470206622034,1.303421761262498,-0.3838747406002947,-2.202955552967785
+zs_raw_s04,HC4,HC,generated,1551,4,0.0025789813023855577,0.5759534899121189,0.39558293996924926,0.18037054994286966,0.2940912103210567,0.3252054125879994,-0.031114202266942725,0.9252552983676632,0.6906127196743598,0.2346425786933034,0.5642306552891133,-0.288140374032716,0.1302307862455834,2.795696429563766,-2.1166182214178972,-2.0980942396950453,-1.888911138762013,1.1339924818333318,2.532650323604572,1.2594939780131853,1.2731563455913866,-1.5034025195121496
+zs_raw_s04,HC5,HC,generated,895,1,0.0011173184357541898,0.6962974256750782,0.44880377016047973,0.2474936555145985,0.3297825167755261,0.33893377050756235,-0.009151253732036235,0.8764064961493108,0.7232767913717845,0.1531297047775263,0.40280199318013765,-0.27115161647841945,0.22470936420237025,2.144580080246871,-3.611739214992025,-2.8989670808288044,-2.97576200373032,-1.2257365115115397,2.383552682780393,1.3732615327803976,1.0102911499999954,-2.01924324404268
+zs_raw_s04,HC6,HC,generated,366,0,0.0,,0.3525888334470788,,,0.3054785363397799,,,0.6609117185099694,,,,,,,,,,,1.212471817559728,,
+zs_raw_s04,HC7,HC,generated,971,3,0.003089598352214212,0.4574080777848877,0.37136425303886833,0.08604382474601935,0.3241953029564327,0.31850341484048195,0.005691888115950727,0.7855147947710183,0.6845981178959002,0.10091667687511807,0.5046919670760037,0.27346231118219017,0.49790893121821145,1.2728955049940884,-2.731915842793648,-1.9772860088835758,-2.047633141849482,-1.2896771974839596,1.7639558307309369,1.2737333099554426,0.4902225207754942,-1.6920294907307372
+zs_raw_s04,HC8,HC,generated,1124,0,0.0,,0.38242409116629783,,,0.30081537372074735,,,0.6695938356108235,,,,,,,,,,,1.2880445993388459,,
+zs_raw_s04,HC9,HC,generated,550,0,0.0,,0.3235461971474049,,,0.28990282078551183,,,0.6315529023271896,,,,,,,,,,,1.1110433112405054,,