Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_cal_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.3142084230782729,0.34365848801392046,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.23723550601554919,0.07907850200518306,0.3823205225761092,0.04473718113088945,0.6499274395302824,0.13185307044856986,0.49656377570797594
+zs_cal_s13,BD,ifng_response_log2fc_high_vs_other,-1.660787990563754,-1.4755353950122503,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.7403210842029444,0.2467736947343148,0.38390131975691055,-3.2233020145042293,-0.7744250230052084,-2.2298491510806944,-1.0917268300468135
+zs_cal_s13,BD,ifng_response_c1q_high_minus_other,0.08178080664774089,0.0807805386228242,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.03054832728581971,0.010182775761939903,0.02476720304559099,0.021891811943252237,0.12460167876707987,0.058299283632850724,0.10526232966263105
+zs_cal_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.02698211098306346,-0.03787891156365448,0.2222222222222222,-0.5555555555555556,0.359375,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.0699961067756226,0.0233320355918742,0.051288154608495534,-0.10244205243516234,0.10374921808509652,-0.08078588154065613,0.02682165957452922
+zs_cal_s13,BD,proinflammatory_log2fc_high_vs_other,-1.400480570592483,-1.3075218524775083,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.3423935593459415,0.11413118644864717,0.4117824106543262,-2.1426305443823623,-1.0751081066018728,-1.663667558498821,-1.137293582686145
+zs_cal_s13,BD,proinflammatory_c1q_high_minus_other,0.02278421390463408,0.030184332869262753,0.8888888888888888,0.7777777777777778,0.02734375,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.02500949286490863,0.00833649762163621,0.033015767761916615,-0.02439720282243074,0.057020056373046524,0.0035602159160212886,0.04200821189324687
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.29062370870397297,0.2879324618630601,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.20514412811048963,0.06838137603682988,0.057053660681166074,-0.04539046263197489,0.7506280374379306,0.1329359727920922,0.4483114446158537
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-1.2737652766559089,-1.0921360766632442,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.3787321384867127,0.12624404616223758,0.6132814936999818,-1.805021826623227,-0.829759088971289,-1.5648845691509343,-0.9826459841608834
+zs_cal_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.1325700385517266,0.13195522953998806,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.025051436273131954,0.008350478757710651,0.04528542335636154,0.09133147869138403,0.16294752858870348,0.1133138000055113,0.15182627709794191
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1156931746674361,1.0227112633594913,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.7372687388985754,0.2457562462995251,0.24592719117802508,0.18577793187075747,2.8771950624273512,0.5489782544484777,1.6824080948863944
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.10377602267422072,-0.05678447795979844,0.2222222222222222,-0.5555555555555556,0.30078125,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.36366729697841355,0.12122243232613784,0.40627538620443987,-0.6534601504569234,0.571139296583026,-0.3833154528978017,0.17576340754936032
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6388389789992623,0.6883875308825387,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.17149453472358345,0.05716484490786115,0.1963201036999629,0.43583798661394035,0.9558769333416706,0.5070166102534297,0.770661347745095
+zs_cal_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.21128163586902904,0.33879819923639365,0.6666666666666666,0.3333333333333333,0.09765625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.36737508915016376,0.12245836305005459,0.5680350014844285,-0.40657469288904197,0.7250795795447383,-0.07110785571472988,0.49367112745278796
+zs_cal_s13,HC,ifng_response_log2fc_high_vs_other,-2.281331303958161,-2.0582899694851124,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.6909744561068779,0.23032481870229263,1.170472858154461,-3.210871362630563,-1.2839154731271107,-2.812461288325798,-1.7502013195905244
+zs_cal_s13,HC,ifng_response_c1q_high_minus_other,0.08316935405092662,0.06627044916482025,0.8888888888888888,0.7777777777777778,0.0078125,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.061196168187724546,0.020398722729241515,0.06250744788878337,-0.0031670505051130116,0.18494229903255374,0.03612981508441249,0.13020889301744076
+zs_cal_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.044327791249231634,0.01743168297267766,0.5555555555555556,0.1111111111111111,0.91015625,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.26550723196385806,0.08850241065461935,0.33542640138559376,-0.572461724381539,0.29353887088505753,-0.2484147161943211,0.1597591336958578
+zs_cal_s13,HC,proinflammatory_log2fc_high_vs_other,-1.6849382593710536,-1.5167002536362324,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.46890438959631087,0.15630146319877028,0.5643529140752648,-2.6661326931930445,-1.1503979166190712,-2.0453700798458794,-1.3245064388962275
+zs_cal_s13,HC,proinflammatory_c1q_high_minus_other,0.02131049747322409,0.019520367044835257,0.8888888888888888,0.7777777777777778,0.09765625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.047397688991397124,0.01579922966379904,0.032025582225451876,-0.07906181048439165,0.09473765019328875,-0.015122591464536823,0.057743586410985
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.45899008055018164,0.3936156821435893,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.17567518546850125,0.058558395156167085,0.18810049912459792,0.30902466404800677,0.8617268308794488,0.32395417916914077,0.5940259819312226
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.5586427575255648,-1.5173720654376723,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.5002832724772716,0.16676109082575719,0.4603820835490098,-2.3636828277437507,-0.7557376989199063,-1.9431945225609184,-1.1740909924902112
+zs_cal_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.14230623254405594,0.1303179581200718,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.03862768980108888,0.01287589660036296,0.021528175700433583,0.08190729850890699,0.2183026858144469,0.1126143617391577,0.17199810334895418
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.7802831711871139,1.7026437986443592,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.5469162167999259,0.1823054055999753,0.6211473293766616,0.9378836863513929,2.7372600164524235,1.3598861520034982,2.2006801903707296
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.036791491243485255,-0.1632592130498263,0.3333333333333333,-0.3333333333333333,0.734375,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.6661748884504826,0.22205829615016084,0.7755521940886194,-1.140209723619777,1.1185275252370432,-0.5488588404221474,0.4752758579351769
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7299857521039733,0.7056084475110618,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09049775124451179,0.03016591708150393,0.10697447354411183,0.569965974924262,0.8495618548963708,0.6604230225717993,0.7995484816361473

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_cal_s13,BDU1,BD,generated,632,6,0.00949367088607595,0.3629232104276275,0.23832153166054762,0.12460167876707987,0.2216404654257841,0.17929402847529236,0.042346436950491756,0.6257263828139694,0.46277885422526593,0.16294752858870348,0.6179563751391259,-0.10244205243516234,-0.04539046263197489,1.1505631989252343,-1.429883764330575,-1.5466883561404814,-1.6883820624245869,-0.05678447795979844,2.06826429423962,1.2883095154727773,0.7799547787668426,-1.046110925001622
+zs_cal_s13,BDU2,BD,generated,330,5,0.015151515151515152,0.32783060995197816,0.2308284162704684,0.09700219368150975,0.18839287511241146,0.16401886449052883,0.02437401062188263,0.5262241453964498,0.43489266670506577,0.09133147869138403,0.4695096917308306,0.10374921808509652,0.29936651613071585,0.9736950445419458,-1.737208495936548,-1.4019624688423493,-1.5063858297779276,-0.4124380455749023,1.6752273058380915,1.2393893192241512,0.43583798661394035,-1.0878580432817908
+zs_cal_s13,BDU3,BD,generated,592,4,0.006756756756756757,0.3515502939183666,0.2707697552955424,0.0807805386228242,0.21627015247972314,0.1860858196104604,0.030184332869262753,0.5726844914558042,0.4407292619158162,0.13195522953998806,0.04473718113088945,-0.025817542465892376,0.289029813121409,1.1463992264748473,-2.415268601050022,-1.6468663138739723,-1.620991296178557,-0.43392522708002007,1.9382540352532132,1.2376283207762204,0.7006257144769927,-1.1944540514339843
+zs_cal_s13,BDV1,BD,generated,901,14,0.01553829078801332,0.3822992235828238,0.2680547083387634,0.11424451524406043,0.22537533550491157,0.19005477476046603,0.035320560744445534,0.5967914138481107,0.4565579590779749,0.14023345477013582,0.6499274395302824,-0.04477410274423636,0.33233022397506984,0.18577793187075747,-0.7744250230052084,-1.0751081066018728,-0.829759088971289,-0.6534601504569234,1.779828815220405,1.2451096458948148,0.5347191693255902,-0.7621885336686153
+zs_cal_s13,BDV2,BD,generated,565,10,0.017699115044247787,0.32438939905168074,0.252154408415762,0.07223499063591876,0.1704296345556184,0.16855782108455947,0.0018718134710589418,0.5380095616425656,0.42741772073200685,0.11059184091055879,0.17066552411855515,-0.09052769753447602,0.24231285544954978,0.9046360077472092,-1.4755353950122503,-1.2682899513867836,-1.048328147540652,-0.04006943212432053,1.7216207324599224,1.2697096935275223,0.45191103893240014,-0.8399505945824743
+zs_cal_s13,BDV3,BD,generated,1026,12,0.011695906432748537,0.3094847399970135,0.2491794116210747,0.06030532837593877,0.18455978634460138,0.18189871175858502,0.00266107458601636,0.5770387103459429,0.4665843480689133,0.1104543622770296,0.34365848801392046,-0.03787891156365448,0.2879324618630601,1.2092073374961199,-1.485162982885304,-1.3075218524775083,-1.0921360766632442,0.17868045034933078,1.8807285400946265,1.18279649221827,0.6979320478763564,-0.9612080407540713
+zs_cal_s13,BDV4,BD,generated,678,3,0.004424778761061947,0.2645451129911989,0.2426533010479467,0.021891811943252237,0.15460648008615932,0.17900368290859006,-0.02439720282243074,0.6387636418950332,0.4828863776281129,0.15587726426692033,0.050986603182306404,-0.07710569707438791,0.7506280374379306,2.8771950624273512,-3.2233020145042293,-2.1426305443823623,-1.805021826623227,0.571139296583026,2.2601957848465286,1.304318851504858,0.9558769333416706,-1.5747599252182616
+zs_cal_s13,BDV5,BD,generated,1008,15,0.01488095238095238,0.3457121201372576,0.25309504424497664,0.09261707589228096,0.23660764647387478,0.2009308041259418,0.035676842347932974,0.5752856250986397,0.41428919309520057,0.1609964320034391,0.39324533570382414,0.0695157678245467,0.21265950052068805,1.0227112633594913,-1.0529984621700135,-1.0803515961408625,-1.0077098024785753,-0.006162659370462466,1.807056944951206,1.1186694140686673,0.6883875308825387,-0.8124739994781107
+zs_cal_s13,BDV6,BD,generated,1121,13,0.01159678858162355,0.32353135082670764,0.25118222415990465,0.07234912666680299,0.23968152094232165,0.18266146456927512,0.057020056373046524,0.5854132791527696,0.4566705232353895,0.12874275591738016,0.08718916915472143,-0.03755798093940487,0.24674443246930855,0.5710534991639702,-1.3533071761796374,-1.1349059454861552,-0.8651733592451204,-0.08096395843391592,1.767306377678531,1.263000766901501,0.5043056107770298,-0.7608026587356648
+zs_cal_s13,HC1,HC,generated,907,11,0.012127894156560088,0.29970568571330986,0.2507167430323208,0.04898894268098908,0.20632066230517346,0.18828602437012895,0.018034637935044506,0.61204443729574,0.4817264791756682,0.1303179581200718,-0.16425157213880748,-0.23966376628124156,0.5412605059800772,1.506786898088401,-1.8299397517364908,-1.4127964213823803,-0.7557376989199063,0.6475151764127011,1.9829334007401782,1.292624612121154,0.6903087886190242,-0.9149171429239541
+zs_cal_s13,HC10,HC,generated,575,6,0.010434782608695653,0.2991479771138816,0.25097325264742626,0.04817472446645532,0.20255681789616817,0.1830364508513329,0.019520367044835257,0.6069400508767319,0.4803507412167174,0.12658930966001447,0.18758585916565043,0.29353887088505753,0.4904403027507613,1.660079174797236,-2.3474075551449376,-1.345432705942054,-1.5173720654376723,-0.06378332272483708,1.9163731696456423,1.2107647221345805,0.7056084475110618,-1.2928465205021067
+zs_cal_s13,HC2,HC,generated,548,2,0.0036496350364963502,0.30994418485342407,0.2575094313057995,0.05243475354762456,0.10983229432820377,0.18889410481259541,-0.07906181048439165,0.7084651512403353,0.49016246542588837,0.2183026858144469,-0.11846319476754673,-0.572461724381539,0.8617268308794488,2.0333181829014304,-3.210871362630563,-2.6661326931930445,-1.734785081822896,-0.4370491453524358,2.129774085561439,1.33434932425551,0.7954247613059291,-1.520350651930118
+zs_cal_s13,HC3,HC,generated,461,1,0.0021691973969631237,0.4265748058046247,0.24163250677207096,0.18494229903255374,0.27126606442244594,0.1765284142291572,0.09473765019328875,0.6744073171103953,0.49391481003139975,0.1804925070789955,0.4720056953508752,0.1268028948333299,0.5243317889007958,2.1279342274650626,-3.000412609890952,-1.977149335457645,-2.3636828277437507,-1.140209723619777,2.0913098905836485,1.319776869925386,0.7715330206582625,-1.6509196424116561
+zs_cal_s13,HC4,HC,generated,828,10,0.012077294685990338,0.36451020816127555,0.2530138175915031,0.11149639056977245,0.21371307335899914,0.1756987871842579,0.03801428617474123,0.6106839050654054,0.4625664197049573,0.14811748536044805,0.4177830426021181,0.01743168297267766,0.3362312897761979,2.136642689796056,-1.2839154731271107,-1.1503979166190712,-1.0034841532931018,1.1185275252370432,2.0630072807290363,1.2270413779047606,0.8359659028242756,-0.8970374581363969
+zs_cal_s13,HC5,HC,generated,255,6,0.023529411764705882,0.3402592732752701,0.2708404037732768,0.06941886950199333,0.17721360001419817,0.17566683893214674,0.0015467610820514288,0.6125716266478957,0.489672026160068,0.12289960048782766,0.44957180671688185,0.02768989213976334,0.30902466404800677,0.9378836863513929,-1.7044388532015873,-1.494337450893103,-1.3778506963624761,-0.402761839509294,1.9183562750457064,1.3483903001214443,0.569965974924262,-1.0619855931947915
+zs_cal_s13,HC6,HC,generated,256,0,0.0,,0.2358645602976158,,,0.17681472831457073,,,0.5017143585977728,,,,,,,,,,,1.312233522320966,,
+zs_cal_s13,HC7,HC,generated,718,5,0.006963788300835654,0.24607247352438488,0.2492395240294979,-0.0031670505051130116,0.2230603575595116,0.18916578975397938,0.03389456780553221,0.5746991831094543,0.49279188460054735,0.08190729850890699,-0.40657469288904197,0.2149657005365845,0.31324346865931746,1.7026437986443592,-3.144310548541808,-1.5321176594219728,-1.838232779911486,-0.1632592130498263,1.9481435629271762,1.259693275165359,0.6884502877618173,-1.3866819082548312
+zs_cal_s13,HC8,HC,generated,531,6,0.011299435028248588,0.3060460498758712,0.23977560071105095,0.06627044916482025,0.17919541869560304,0.1732067147463137,0.0059887039492893535,0.5927964864716356,0.4661142896782137,0.1266821967934219,0.33879819923639365,-0.05863016539545329,0.3936156821435893,1.179999866187662,-1.9523956118648897,-1.5167002536362324,-1.396807338005038,-0.26289323316426666,1.8733793072253004,1.210326576790544,0.6630527304347564,-1.1236266042413088
+zs_cal_s13,HC9,HC,generated,430,3,0.0069767441860465115,0.40452779769511027,0.23456298969586628,0.169964807999244,0.23867343268032384,0.17955411912169814,0.05911931355862571,0.6253014803161158,0.4798544292437455,0.14544705107237027,0.7250795795447383,-0.2086235065522639,0.36103619181344,2.7372600164524235,-2.0582899694851124,-2.0693798977939797,-2.039832176233756,0.3727903545793254,2.0950949144125546,1.2455330595161838,0.8495618548963708,-1.3645097575135339

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_D/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_cal_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.2744891169813907,0.30009437832312336,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1609846640382774,0.0536615546794258,0.19325165605557837,0.08441654729085929,0.5753798970566883,0.15074534998915037,0.3982328839736311
+zs_cal_s13,BD,ifng_response_log2fc_high_vs_other,-0.6831858600113371,-0.655366705325589,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.39303881588288453,0.13101293862762817,0.45877927868621315,-1.4310913708042559,-0.09361232716823402,-0.9853022382518972,-0.38106948177077693
+zs_cal_s13,BD,ifng_response_c1q_high_minus_other,0.08033351825123758,0.07690051208496448,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.014269741369351009,0.0047565804564503366,0.021319175614140318,0.06302030446761028,0.10777224251373463,0.06936482404923178,0.09130221245324338
+zs_cal_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.04048590649607219,-0.03157762368948769,0.2222222222222222,-0.5555555555555556,0.25,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.10865541994637373,0.03621847331545791,0.08901383371627322,-0.2061613188829945,0.13257464249838458,-0.12400585573229986,0.04303404274015548
+zs_cal_s13,BD,proinflammatory_log2fc_high_vs_other,-0.7758116361695793,-0.6737412350570612,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2672431274931764,0.08908104249772547,0.3442855859497367,-1.2841862316778005,-0.49781387424799955,-0.9812328885376322,-0.5703903838015263
+zs_cal_s13,BD,proinflammatory_c1q_high_minus_other,0.017558739971116025,0.0184857965548752,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.008509804053041496,0.002836601351013832,0.009735613979373808,0.0036279307938388017,0.03156158004134815,0.011017525525752404,0.024099954416479646
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.20545966569189092,0.24393900478863176,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.14449755647152931,0.04816585215717644,0.19244632414057938,-0.02168763714878332,0.4563830187113176,0.09438901144180956,0.3165303199419723
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.5678108608732647,-0.49912387309838885,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.26183208139198055,0.08727736046399352,0.19874041266668857,-1.0632947962988069,-0.3232446300253155,-0.7690728150129383,-0.3665489067335911
+zs_cal_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.1271593940902732,0.1204582199024033,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.015309643951596329,0.00510321465053211,0.01919496697412465,0.1078357504644245,0.15566610994954466,0.11539136000331165,0.13892742817723472
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9841566803157412,0.964989559693344,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.32405834644844284,0.10801944881614761,0.49099031418898187,0.6131477200144456,1.5018415599898298,0.7350633846632301,1.2332499759682523
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.46631878525507314,0.394860196174841,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2476776502173792,0.0825592167391264,0.11828247146317888,0.1972161285775958,1.0182795112411467,0.27593689005543065,0.6567006804547156
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6369871397108818,0.6268949915228332,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.0975388127838617,0.03251293759462057,0.13848575046081257,0.4936054270091583,0.7763787461292904,0.5620121711700519,0.7119621082517118
+zs_cal_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.3380356100967875,0.38986813755772587,0.7,0.4,0.02734375,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.28883999232423707,0.0913392255090141,0.508055680672681,-0.014745905198074283,0.7563118114176979,0.13141192686713074,0.5446592933264442
+zs_cal_s13,HC,ifng_response_log2fc_high_vs_other,-1.034992748741456,-0.9403406829776844,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5453205825573876,0.1724455095851233,0.6625184282910084,-2.0652130709353576,-0.2669966722740881,-1.4250915934418293,-0.6448939040410828
+zs_cal_s13,HC,ifng_response_c1q_high_minus_other,0.08213621279409677,0.0860824662298836,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.026268470307058013,0.008306819681880595,0.04406621213535644,0.043502707652442685,0.11547802771751889,0.06334488115065748,0.10092754443753607
+zs_cal_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.06188966686420648,0.13831014433173552,0.7,0.4,0.16015625,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.15322270151969333,0.04845327260463738,0.2489934843093829,-0.19249845616651937,0.20302752319684902,-0.04771925081938801,0.17149858454780098
+zs_cal_s13,HC,proinflammatory_log2fc_high_vs_other,-0.9040514829090054,-0.9251458016159162,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.23523231590295066,0.07438698975295718,0.2506840856496364,-1.2051871965208585,-0.3948522045161353,-1.0723265445976542,-0.7357764212203566
+zs_cal_s13,HC,proinflammatory_c1q_high_minus_other,0.021930330204769026,0.025063252223762447,0.9,0.8,0.02734375,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.020737841825479126,0.006557881392481808,0.020254547672347113,-0.028460690321264775,0.03990655253000655,0.007095371839985237,0.036765288569552815
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.2461793864876715,0.23438577889781115,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.11600407206180478,0.036683708556960806,0.09705057115589158,0.05988878390776097,0.4233568941057704,0.1631950724175408,0.3291637005578022
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.8439704683115574,-0.7988715319969638,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.2806250362805662,0.08874142831139753,0.25869066801510765,-1.366401165094542,-0.42923069051372587,-1.0447175260031287,-0.6432234106199861
+zs_cal_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.12269768406586401,0.1230003430086902,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02566291997255592,0.00811532785239025,0.03213349993851067,0.07827251643811761,0.1544855553439407,0.10433953703612363,0.14105583109560438
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1482484627026388,1.207416920426914,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.27537279805219733,0.08708052474985221,0.2841361856693849,0.6011902547313464,1.4715952371604049,0.9512586298995342,1.3452382955057434
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.34548459548618715,0.32246451528811293,0.9,0.8,0.01953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.31491124065865655,0.09958367812707777,0.32382941569456153,-0.2989460879983967,0.7732647767578948,0.12021066471322725,0.570758526259147
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6282381734168254,0.6364002104730417,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.08961101851545766,0.028337492195636676,0.09251961852730461,0.4317559748704791,0.7514970989368188,0.5641343124707277,0.6923420343629232

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_D/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_cal_s13,BDU1,BD,generated,632,17,0.02689873417721519,0.31433644464291416,0.23743593255794967,0.07690051208496448,0.1993035825783005,0.17915405481992944,0.02014952775837106,0.5808036510008721,0.46110611215428526,0.11969753884658679,0.39679098235063004,-0.0931118765081466,-0.02168763714878332,1.3448590077652518,-0.8741859156385876,-1.0483288861831297,-1.0632947962988069,0.6818898314825411,1.9952389464956515,1.276377691643854,0.7188612548517974,-0.6935588813059899
+zs_cal_s13,BDU2,BD,generated,330,16,0.048484848484848485,0.30495996268450587,0.22859563355003193,0.07636432913447394,0.1678401988007555,0.1642122680069167,0.0036279307938388017,0.5566512886482469,0.43014272862342895,0.12650856002481792,0.3294739563111049,-0.004098042791873383,0.4563830187113176,1.158663361930115,-0.9706532735721829,-0.9308861404963942,-0.5852188754136944,0.4663600714365045,1.7982290110782087,1.2178535066872238,0.5803755043909848,-0.6736325897933592
+zs_cal_s13,BDU3,BD,generated,592,27,0.04560810810810811,0.3348196141858217,0.2682808631972305,0.06653875098859119,0.1966809907436741,0.1857931960898945,0.010887794653779592,0.5445384172039239,0.4367026667394994,0.1078357504644245,0.1814900898005805,-0.019748104427009007,0.17461389842956304,0.6704076182182434,-0.6496453014044844,-0.6737412350570612,-0.49912387309838885,0.1972161285775958,1.713455295637846,1.2198498686286876,0.4936054270091583,-0.45703289846202266
+zs_cal_s13,BDV1,BD,generated,901,49,0.05438401775804662,0.3717410278006044,0.2639687852868698,0.10777224251373463,0.20808406057087214,0.18959826401599694,0.0184857965548752,0.5662471410810768,0.4525538492758974,0.11369329180517934,0.5753798970566883,-0.043800071607690255,0.07095097681630029,0.7722262169784073,-0.09361232716823402,-0.5866005545466575,-0.5070314654236666,0.394860196174841,1.8184801526661714,1.2209205772783378,0.5975595753878336,-0.390554956982568
+zs_cal_s13,BDV2,BD,generated,565,35,0.061946902654867256,0.3125492956267224,0.24952899115911212,0.06302030446761028,0.1853354715866561,0.16748518026783718,0.017850291318818906,0.5417942401786413,0.4219511928612019,0.11984304731743939,0.15977446554548552,0.13257464249838458,0.2997981076687572,0.6131477200144456,-0.655366705325589,-0.5015479180965391,-0.3232446300253155,0.2766024379246389,1.7678484285563676,1.2453403627035873,0.5225080658527803,-0.43088710362628035
+zs_cal_s13,BDV3,BD,generated,1026,36,0.03508771929824561,0.3382567539928934,0.24667120921211086,0.09158554478078254,0.20182961569801391,0.18120620706486051,0.0206234086331534,0.6180803531345794,0.46241424318503477,0.15566610994954466,0.08995561455298058,-0.1762745502816056,0.2632135481395457,0.964989559693344,-0.7400993658812903,-0.8057545439594729,-0.38647846274700587,0.45698838671445907,1.9400968267626308,1.1637180806333405,0.7763787461292904,-0.4701904874869404
+zs_cal_s13,BDV4,BD,generated,678,16,0.02359882005899705,0.3098601534514239,0.24112817385364785,0.06873197959777608,0.18810681336686644,0.17867310632883218,0.009433707038034256,0.6220683773447134,0.4802288546633623,0.14183952268135114,0.08441654729085929,-0.2061613188829945,0.24393900478863176,1.1613979324072252,-1.4310913708042559,-1.2841862316778005,-0.9409895941682687,0.35659490377060615,2.0247552452567,1.2912382601151233,0.7335169851415768,-0.8079441528794624
+zs_cal_s13,BDV5,BD,generated,1008,46,0.04563492063492063,0.33276637508960355,0.25072952960831485,0.0820368454812887,0.22571081197418238,0.20030218902635752,0.025408622947824866,0.549239130674145,0.41034662485343354,0.13889250582071144,0.30009437832312336,-0.03157762368948769,0.27718619898113267,1.5018415599898298,-0.41540663695237445,-0.6534453412611588,-0.34085714454001514,1.0182795112411467,1.780919948993941,1.0977362418822596,0.6831837071116813,-0.43246751502451375
+zs_cal_s13,BDV6,BD,generated,1121,50,0.04460303300624442,0.33805584224967355,0.24800468703775716,0.0900511552119164,0.2134765519529803,0.18191497191163214,0.03156158004134815,0.5732489437014019,0.4527907237989986,0.1204582199024033,0.3530261216010639,0.07782378722577273,0.0847398748405533,0.6698771458448082,-0.31861184335503423,-0.49781387424799955,-0.46405890614422063,0.3480775999733256,1.8677826659747,1.2408876744518669,0.6268949915228332,-0.39024885453709174
+zs_cal_s13,HC1,HC,generated,907,44,0.04851157662624035,0.3041479461045904,0.24861698107903105,0.05553096502555935,0.2069290949720681,0.1875653823200712,0.019363712651996906,0.5985152363586401,0.4774330750311376,0.12108216132750255,-0.00706600643197417,-0.14826017797711538,0.22524416033266886,0.8306841951221919,-0.8029927585111085,-0.7437720579165248,-0.42923069051372587,0.4235407999546643,1.8930083094027739,1.270812924976795,0.6221953844259789,-0.464997550531884
+zs_cal_s13,HC10,HC,generated,575,14,0.02434782608695652,0.35979896294192537,0.2487726972154757,0.11102626572644966,0.21803520541073834,0.18237181562573104,0.0356633897850073,0.6035487033192941,0.47863017862941626,0.12491852468987785,0.7563118114176979,0.12649745264230183,0.05988878390776097,1.1541963141538019,-0.692017946163941,-0.8814285262093013,-1.1447552009664095,0.22138823062156152,1.8708210071189555,1.2018393436948038,0.6689816634241517,-0.8034887739049608
+zs_cal_s13,HC2,HC,generated,548,14,0.025547445255474453,0.300092123629704,0.2565894159772613,0.043502707652442685,0.16087196566565348,0.18933265598691826,-0.028460690321264775,0.5672320441660045,0.48895952772788687,0.07827251643811761,-0.011001126362104825,0.01883604953964492,0.4233568941057704,1.3200492130078825,-1.4282147780525765,-1.0602816168550557,-0.7521358802401006,0.5021480900977892,1.7579780470720203,1.3262220722015412,0.4317559748704791,-0.7793379038960409
+zs_cal_s13,HC3,HC,generated,461,9,0.019522776572668113,0.3275314770471576,0.24033129342374523,0.08720018362341239,0.2002225997060028,0.17626622392141753,0.023956375784585288,0.6267416476301163,0.49166934757275055,0.13507230005736576,0.177504263897345,0.19973631493004074,0.3650279785739821,1.2285580145223463,-1.6387858388137362,-0.9688630770225312,-0.9424163511974787,0.1862829948202529,1.8798197773619851,1.3103325045575294,0.5694872728044558,-0.9049103002413542
+zs_cal_s13,HC4,HC,generated,828,43,0.051932367149758456,0.3531638141884516,0.24894823039663547,0.10421558379181614,0.21232883133080527,0.17417655911221447,0.0381522722185908,0.5684965558296676,0.45865072416386415,0.10984583166580347,0.43732049614140084,0.15303128533202515,0.07413560940541547,1.1862758263314819,-0.2669966722740881,-0.3948522045161353,-0.5126059549709382,0.7732647767578948,1.8823422588761667,1.201795162804725,0.6805470960714417,-0.39768485089305233
+zs_cal_s13,HC5,HC,generated,255,16,0.06274509803921569,0.35210741627876996,0.26714266744241516,0.0849647488363548,0.21310584528965212,0.17319929275964557,0.03990655253000655,0.6353520665035384,0.4830047330949276,0.15234733340861079,0.6582999523258215,0.19783170413602627,0.31687400617599404,1.2528374437466228,-0.6843309899205338,-0.80829015528068,-0.7064611545520503,0.5212843021068247,2.0294396022977246,1.3171058106433067,0.7123337916544179,-0.6759060551678508
+zs_cal_s13,HC6,HC,generated,256,5,0.01953125,0.30440008826477316,0.23449931073651706,0.0699007775282561,0.2024737216520623,0.17630359298912268,0.026170128662939607,0.6151670350405216,0.49945434512281756,0.11571268991770406,-0.014745905198074283,0.15012283602116921,0.24352739746295346,1.4715952371604049,-2.0652130709353576,-1.2051871965208585,-1.366401165094542,0.20799013842149852,1.873829384780501,1.3010463537460746,0.5727830310344264,-0.988942433972307
+zs_cal_s13,HC7,HC,generated,718,20,0.027855153203342618,0.29727165681321693,0.2478405585449707,0.04943109826824624,0.19749361637464474,0.1891699678436847,0.008323648530960043,0.579885720650757,0.4908830877116366,0.08900263293912047,0.34241577897405084,0.20302752319684902,0.31320028176058934,0.9740813419796429,-1.0776886074442602,-0.8014821805663123,-0.8280558983209872,0.1875643984061729,1.8710933105088887,1.2471062418300272,0.6239870686788616,-0.7945741018910852
+zs_cal_s13,HC8,HC,generated,531,11,0.02071563088512241,0.3385623106467626,0.23845054087585116,0.10011176977091146,0.18951036464133708,0.1729309302748723,0.01657943436646478,0.6188310165324693,0.4643454611885286,0.1544855553439407,0.4677107706594954,-0.08942786301235749,0.21754063125671244,0.6011902547313464,-1.1104402949318468,-1.1417296251896587,-0.987955221586401,-0.2989460879983967,1.8531914723867096,1.2043781201194876,0.6488133522672219,-0.8007815627649661
+zs_cal_s13,HC9,HC,generated,430,18,0.04186046511627907,0.3463928544484605,0.23091482673094163,0.11547802771751889,0.21795535356378704,0.17830687572538326,0.03964847783840378,0.6209849098016598,0.47474761493106266,0.1462372948705971,0.5736060655442171,-0.19249845616651937,0.22299812189486795,1.463016786270668,-0.5832465303671122,-1.0346281890129954,-0.7696871656729404,0.7303283116736093,1.9714993160898078,1.220002217152989,0.7514970989368188,-0.5948883352434216