Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/receipts/score.json

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+{
+  "state": "completed",
+  "stage": "score",
+  "at": "2026-10-15T11:42:29.225571+00:00",
+  "outputs": [
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+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/score/per_donor.csv

@@ -0,0 +1,23 @@
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/score/summary.json

@@ -0,0 +1,212 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "immicro",
+ "written_utc": "2026-10-15T11:42:29.216643+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "immicro",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/score",
+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/test_sample_ids.txt",
+  "--threads",
+  "2",
+  "--arm",
+  "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n10/lora.npz",
+  "--no-contrast",
+  "--no-deg"
+ ],
+ "arms": [
+  "lora"
+ ],
+ "donors": [
+  "HS3",
+  "HS6",
+  "HS7",
+  "HS13",
+  "HS18",
+  "HS31",
+  "HS34",
+  "HS37",
+  "HS38",
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+  "HS60",
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+  "HS82",
+  "HS83",
+  "HS85",
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+  "HS95",
+  "HS98",
+  "HS101",
+  "HS107"
+ ],
+ "n_donors": 22,
+ "reference": {
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+  "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
+  "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
+  "n_r1_cells": 3300,
+  "pca": {
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+   "explained_variance_ratio_sum": 0.305976539850235,
+   "n_fit_cells": 3300
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+  "r2_control": {
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+  },
+  "observed_l1_loo_null_mean": 0.16302776481179745
+ },
+ "contrast_definition": {
+  "enabled": false,
+  "reason": "--no-contrast"
+ },
+ "deg_definition": {
+  "enabled": false,
+  "reason": "--no-deg"
+ },
+ "headline": {
+  "lora": {
+   "comp_l1": 0.1601209891577503,
+   "comp_l1_obs_loo_null": 0.16302776481179745,
+   "precision": 0.9942424242424243,
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+   "coverage_dm": 0.9921212121212121,
+   "pb_r_median": 0.9061493552582502,
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n20/lora/scoring_support.json

@@ -0,0 +1,69 @@
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