Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
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+covered,NK cell,pseudobulk_log1p_cpm,2886,0.10105517185145095,0.11358675488982897,-0.0296760181993695,0.9612406939320501

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_full/per_donor.csv

@@ -0,0 +1,27 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw2_full/summary.json

@@ -0,0 +1,147 @@
+{
+ "dataset": "ji2025_chili",
+ "comparison": "fewshot",
+ "draw": 2,
+ "gene_mode": "full",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw2",
+ "lora_arm": "lora5",
+ "n_donors": 26,
+ "contrast": true,
+ "genes_scoring": 5752,
+ "genes_covered_by_Z_all_donors": 5369,
+ "bayesprism": {
+  "comp_l1": 1.139290942018029,
+  "comp_l1_by_variant": {
+   "final_cells": 1.139290942018029,
+   "first_cells": 1.0689465254196084,
+   "final_mrna": 1.1608780525246691,
+   "first_mrna": 1.0977909959846284
+  },
+  "mean_fraction": {
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+  "partial_r_mean_cp10k": 0.0072414506076920356,
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+  "deg_top50_sum_covered_genes": 2,
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+ "observed_mean_fraction": {
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+  "Monocyte": 0.2749,
+  "NK cell": 0.1572,
+  "DC": 0.0116,
+  "Other": 0.0329
+ },
+ "lora": {
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+  "coverage": 0.5297435897435897,
+  "logfc_r_mean_cp10k": 0.28938101620694295,
+  "deg_top50_sum": 0,
+  "partial_r_mean_cp10k": 0.24803917247992743
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+ "broadcast": {
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+  "logfc_r_mean_cp10k_covered_genes": 0.22094843630165412,
+  "deg_top50_sum": 5
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+ "other_arms": {
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+   "logfc_r_mean_cp10k": 0.13614408592709415,
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+  "zs_pseudo": {
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+   "logfc_r_mean_cp10k": 0.19987110878639727,
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+  "zs_cal": {
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+   "logfc_r_mean_cp10k": 0.23055486304734635,
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+ },
+ "gates": {
+  "observed_composition_equal": true,
+  "broadcast_r_equal": true,
+  "broadcast_deg_equal": true
+ },
+ "n_case": 16,
+ "n_control": 10,
+ "deg_per_type": {
+  "zero_filled": {
+   "bp": {
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+    "B cell": 1,
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+    "NK cell": 1,
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+   },
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+    "NK cell": 0,
+    "DC": 0
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+  },
+  "covered": {
+   "bp": {
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+    "B cell": 1,
+    "Monocyte": 0,
+    "NK cell": 1,
+    "DC": 0
+   },
+   "broadcast": {
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+    "B cell": 1,
+    "Monocyte": 0,
+    "NK cell": 0,
+    "DC": 0
+   }
+  }
+ },
+ "tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 2.0
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3028,0.1207689382892094,0.2368920077117674,-0.030501425690650865,0.6090227363145942
+zero_filled,T cell,pseudobulk_log1p_cpm,3028,0.190590956594694,0.30559676102300276,0.03816450783120476,0.5222628153370952
+zero_filled,B cell,mean_cp10k,3238,0.17843237699333014,0.16221245678147309,0.10017353413660991,0.6236458263227989
+zero_filled,B cell,pseudobulk_log1p_cpm,3238,0.07940459215513476,0.047548729682353,0.06640637980474795,0.7546440993489388
+zero_filled,Monocyte,mean_cp10k,3132,0.412709110879501,0.4012426962403039,0.1339500160470762,0.8879109565370028
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3132,0.3492477205559485,0.36057989165867327,0.010405845442098225,0.9611417114098957
+zero_filled,NK cell,mean_cp10k,3064,0.17082619834947108,0.23076485505524633,-0.026432674054782234,0.806200698429014
+zero_filled,NK cell,pseudobulk_log1p_cpm,3064,0.09048409035318886,0.11924462462412533,-0.06173770999392016,0.9375800849545436
+covered,T cell,mean_cp10k,3007,0.1215986188793268,0.22545999285798687,-0.03889211027753436,0.6648694628091302
+covered,T cell,pseudobulk_log1p_cpm,3007,0.19311491152815832,0.2985776657209517,0.04559197510127285,0.5225285902488904
+covered,B cell,mean_cp10k,3217,0.17932631915945746,0.13839855980866259,0.11801829471009471,0.6649508910415761
+covered,B cell,pseudobulk_log1p_cpm,3217,0.07974424565380514,0.0417781013372727,0.07422944544036947,0.7645735550499784
+covered,Monocyte,mean_cp10k,3111,0.414749234541897,0.4090053875909608,0.10305532397237886,0.9288870769517475
+covered,Monocyte,pseudobulk_log1p_cpm,3111,0.34968526559913177,0.3620834945865439,-0.00589493928999646,0.9694793655071056
+covered,NK cell,mean_cp10k,3042,0.17360615497243287,0.2102248572736354,-0.018073354493856723,0.867605966206151
+covered,NK cell,pseudobulk_log1p_cpm,3042,0.09184230688641154,0.11037231532472307,-0.04360296840668166,0.9521349628584489