Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d2-merge.log

@@ -0,0 +1 @@
+{"output_sha256": "2544d78f4c79b58f8ac43af31560b62460933336c0797b2551411fda81f2cd7a", "cells": 115500, "bulks": 77, "seed": 22260933, "seconds": 28.2}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d2-pack.log

@@ -0,0 +1 @@
+{"file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/ye2026_sepsis/lora5k4_bulkonly_ye2026_sepsis_draw2.h5ad", "cells": 488000, "samples": 122, "nnz": 142128320, "bytes": 326598732}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d2-pgen.log

@@ -0,0 +1 @@
+{"dataset": "ye2026_sepsis", "draw": 2, "cells": 115500, "samples": 77, "seconds": 16.2}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d2-score.log

@@ -0,0 +1,16 @@
+09:01:52 ye2026_sepsis: 77 scored donors, 2 arm(s); fitting the observed reference
+09:01:57 reference: R1 11550 cells, PCA var 0.337, R2 control P/C 0.9816/0.9999; contrast on
+09:01:57 observed top-50 DEG lists: T 50 (sig 1479, 57+20 donors, 279996 cells), B 50 (sig 1019, 57+20 donors, 95354 cells), Mono 50 (sig 2388, 57+20 donors, 107968 cells), NK 50 (sig 1124, 57+20 donors, 45869 cells), DC 50 (sig 1428, 53+20 donors, 3221 cells)
+09:01:57 lora5: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+09:02:08 lora5: Poisson read-out nnz 33075747 (whole NPZ), median library 1840; annotating
+09:02:18 lora5: L1 0.4987 (null 0.5196680228845961) P/C 0.9184/0.7606 pb r 0.8865 top1 0.104 mono 11.2% (20.8 s)
+09:02:18 lora5: top-50 DEG 26/250 (T 13, B 10, Mono 2, NK 1, DC 0); broadcast 18 (0.32 s)
+09:02:18 lora5_k4000: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+09:02:31 lora5_k4000: Poisson read-out nnz 33269448 (whole NPZ), median library 1829; annotating
+09:02:41 lora5_k4000: L1 0.4953 (null 0.5196680228845961) P/C 0.9157/0.7569 pb r 0.8853 top1 0.078 mono 11.2% (23.0 s)
+09:02:41 lora5_k4000: top-50 DEG 32/250 (T 15, B 16, Mono 0, NK 1, DC 0); broadcast 18 (0.31 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+lora5         0.4987                0.5197     0.9184    0.7606        0.9366       0.8435       0.8865   0.1039       11.2372       21.1854          1840.0          1954.0                     0.3272                               0.3327                           0.3387                                     0.3249         13.0         10.0             2.0           1.0           0.0           26.0          250.0                 26.0                     18.0     20.8
+lora5_k4000   0.4953                0.5197     0.9157    0.7569        0.9300       0.8436       0.8853   0.0779       11.2468       21.1854          1829.0          1954.0                     0.3472                               0.3488                           0.3387                                     0.3249         15.0         16.0             0.0           1.0           0.0           32.0          250.0                 32.0                     18.0     23.0
+09:02:41 done in 55.3 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/ye2026_sepsis/draw2
+{"lora5": {"comp_l1": 0.4987, "coverage": 0.7606, "pb_r_median": 0.8865, "contrast_mean_cp10k_r_gen": 0.3272, "deg_top50_sum": 26}, "lora5_k4000": {"comp_l1": 0.4953, "coverage": 0.7569, "pb_r_median": 0.8853, "contrast_mean_cp10k_r_gen": 0.3472, "deg_top50_sum": 32}}