Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_cal_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.2744891169813907,0.30009437832312336,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1609846640382774,0.0536615546794258,0.19325165605557837,0.08441654729085929,0.5753798970566883,0.15074534998915037,0.3982328839736311
+zs_cal_s13,BD,ifng_response_log2fc_high_vs_other,-0.6831858600113371,-0.655366705325589,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.39303881588288453,0.13101293862762817,0.45877927868621315,-1.4310913708042559,-0.09361232716823402,-0.9853022382518972,-0.38106948177077693
+zs_cal_s13,BD,ifng_response_c1q_high_minus_other,0.08033351825123758,0.07690051208496448,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.014269741369351009,0.0047565804564503366,0.021319175614140318,0.06302030446761028,0.10777224251373463,0.06936482404923178,0.09130221245324338
+zs_cal_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.04048590649607219,-0.03157762368948769,0.2222222222222222,-0.5555555555555556,0.25,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.10865541994637373,0.03621847331545791,0.08901383371627322,-0.2061613188829945,0.13257464249838458,-0.12400585573229986,0.04303404274015548
+zs_cal_s13,BD,proinflammatory_log2fc_high_vs_other,-0.7758116361695793,-0.6737412350570612,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2672431274931764,0.08908104249772547,0.3442855859497367,-1.2841862316778005,-0.49781387424799955,-0.9812328885376322,-0.5703903838015263
+zs_cal_s13,BD,proinflammatory_c1q_high_minus_other,0.017558739971116025,0.0184857965548752,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.008509804053041496,0.002836601351013832,0.009735613979373808,0.0036279307938388017,0.03156158004134815,0.011017525525752404,0.024099954416479646
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.20545966569189092,0.24393900478863176,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.14449755647152931,0.04816585215717644,0.19244632414057938,-0.02168763714878332,0.4563830187113176,0.09438901144180956,0.3165303199419723
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.5678108608732647,-0.49912387309838885,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.26183208139198055,0.08727736046399352,0.19874041266668857,-1.0632947962988069,-0.3232446300253155,-0.7690728150129383,-0.3665489067335911
+zs_cal_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.1271593940902732,0.1204582199024033,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.015309643951596329,0.00510321465053211,0.01919496697412465,0.1078357504644245,0.15566610994954466,0.11539136000331165,0.13892742817723472
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9841566803157412,0.964989559693344,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.32405834644844284,0.10801944881614761,0.49099031418898187,0.6131477200144456,1.5018415599898298,0.7350633846632301,1.2332499759682523
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.46631878525507314,0.394860196174841,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2476776502173792,0.0825592167391264,0.11828247146317888,0.1972161285775958,1.0182795112411467,0.27593689005543065,0.6567006804547156
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6369871397108818,0.6268949915228332,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.0975388127838617,0.03251293759462057,0.13848575046081257,0.4936054270091583,0.7763787461292904,0.5620121711700519,0.7119621082517118
+zs_cal_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.3380356100967875,0.38986813755772587,0.7,0.4,0.02734375,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.28883999232423707,0.0913392255090141,0.508055680672681,-0.014745905198074283,0.7563118114176979,0.13141192686713074,0.5446592933264442
+zs_cal_s13,HC,ifng_response_log2fc_high_vs_other,-1.034992748741456,-0.9403406829776844,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5453205825573876,0.1724455095851233,0.6625184282910084,-2.0652130709353576,-0.2669966722740881,-1.4250915934418293,-0.6448939040410828
+zs_cal_s13,HC,ifng_response_c1q_high_minus_other,0.08213621279409677,0.0860824662298836,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.026268470307058013,0.008306819681880595,0.04406621213535644,0.043502707652442685,0.11547802771751889,0.06334488115065748,0.10092754443753607
+zs_cal_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.06188966686420648,0.13831014433173552,0.7,0.4,0.16015625,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.15322270151969333,0.04845327260463738,0.2489934843093829,-0.19249845616651937,0.20302752319684902,-0.04771925081938801,0.17149858454780098
+zs_cal_s13,HC,proinflammatory_log2fc_high_vs_other,-0.9040514829090054,-0.9251458016159162,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.23523231590295066,0.07438698975295718,0.2506840856496364,-1.2051871965208585,-0.3948522045161353,-1.0723265445976542,-0.7357764212203566
+zs_cal_s13,HC,proinflammatory_c1q_high_minus_other,0.021930330204769026,0.025063252223762447,0.9,0.8,0.02734375,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.020737841825479126,0.006557881392481808,0.020254547672347113,-0.028460690321264775,0.03990655253000655,0.007095371839985237,0.036765288569552815
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.2461793864876715,0.23438577889781115,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.11600407206180478,0.036683708556960806,0.09705057115589158,0.05988878390776097,0.4233568941057704,0.1631950724175408,0.3291637005578022
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.8439704683115574,-0.7988715319969638,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.2806250362805662,0.08874142831139753,0.25869066801510765,-1.366401165094542,-0.42923069051372587,-1.0447175260031287,-0.6432234106199861
+zs_cal_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.12269768406586401,0.1230003430086902,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02566291997255592,0.00811532785239025,0.03213349993851067,0.07827251643811761,0.1544855553439407,0.10433953703612363,0.14105583109560438
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1482484627026388,1.207416920426914,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.27537279805219733,0.08708052474985221,0.2841361856693849,0.6011902547313464,1.4715952371604049,0.9512586298995342,1.3452382955057434
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.34548459548618715,0.32246451528811293,0.9,0.8,0.01953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.31491124065865655,0.09958367812707777,0.32382941569456153,-0.2989460879983967,0.7732647767578948,0.12021066471322725,0.570758526259147
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6282381734168254,0.6364002104730417,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.08961101851545766,0.028337492195636676,0.09251961852730461,0.4317559748704791,0.7514970989368188,0.5641343124707277,0.6923420343629232

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_cal_s13,BDU1,BD,generated,632,17,0.02689873417721519,0.31433644464291416,0.23743593255794967,0.07690051208496448,0.1993035825783005,0.17915405481992944,0.02014952775837106,0.5808036510008721,0.46110611215428526,0.11969753884658679,0.39679098235063004,-0.0931118765081466,-0.02168763714878332,1.3448590077652518,-0.8741859156385876,-1.0483288861831297,-1.0632947962988069,0.6818898314825411,1.9952389464956515,1.276377691643854,0.7188612548517974,-0.6935588813059899
+zs_cal_s13,BDU2,BD,generated,330,16,0.048484848484848485,0.30495996268450587,0.22859563355003193,0.07636432913447394,0.1678401988007555,0.1642122680069167,0.0036279307938388017,0.5566512886482469,0.43014272862342895,0.12650856002481792,0.3294739563111049,-0.004098042791873383,0.4563830187113176,1.158663361930115,-0.9706532735721829,-0.9308861404963942,-0.5852188754136944,0.4663600714365045,1.7982290110782087,1.2178535066872238,0.5803755043909848,-0.6736325897933592
+zs_cal_s13,BDU3,BD,generated,592,27,0.04560810810810811,0.3348196141858217,0.2682808631972305,0.06653875098859119,0.1966809907436741,0.1857931960898945,0.010887794653779592,0.5445384172039239,0.4367026667394994,0.1078357504644245,0.1814900898005805,-0.019748104427009007,0.17461389842956304,0.6704076182182434,-0.6496453014044844,-0.6737412350570612,-0.49912387309838885,0.1972161285775958,1.713455295637846,1.2198498686286876,0.4936054270091583,-0.45703289846202266
+zs_cal_s13,BDV1,BD,generated,901,49,0.05438401775804662,0.3717410278006044,0.2639687852868698,0.10777224251373463,0.20808406057087214,0.18959826401599694,0.0184857965548752,0.5662471410810768,0.4525538492758974,0.11369329180517934,0.5753798970566883,-0.043800071607690255,0.07095097681630029,0.7722262169784073,-0.09361232716823402,-0.5866005545466575,-0.5070314654236666,0.394860196174841,1.8184801526661714,1.2209205772783378,0.5975595753878336,-0.390554956982568
+zs_cal_s13,BDV2,BD,generated,565,35,0.061946902654867256,0.3125492956267224,0.24952899115911212,0.06302030446761028,0.1853354715866561,0.16748518026783718,0.017850291318818906,0.5417942401786413,0.4219511928612019,0.11984304731743939,0.15977446554548552,0.13257464249838458,0.2997981076687572,0.6131477200144456,-0.655366705325589,-0.5015479180965391,-0.3232446300253155,0.2766024379246389,1.7678484285563676,1.2453403627035873,0.5225080658527803,-0.43088710362628035
+zs_cal_s13,BDV3,BD,generated,1026,36,0.03508771929824561,0.3382567539928934,0.24667120921211086,0.09158554478078254,0.20182961569801391,0.18120620706486051,0.0206234086331534,0.6180803531345794,0.46241424318503477,0.15566610994954466,0.08995561455298058,-0.1762745502816056,0.2632135481395457,0.964989559693344,-0.7400993658812903,-0.8057545439594729,-0.38647846274700587,0.45698838671445907,1.9400968267626308,1.1637180806333405,0.7763787461292904,-0.4701904874869404
+zs_cal_s13,BDV4,BD,generated,678,16,0.02359882005899705,0.3098601534514239,0.24112817385364785,0.06873197959777608,0.18810681336686644,0.17867310632883218,0.009433707038034256,0.6220683773447134,0.4802288546633623,0.14183952268135114,0.08441654729085929,-0.2061613188829945,0.24393900478863176,1.1613979324072252,-1.4310913708042559,-1.2841862316778005,-0.9409895941682687,0.35659490377060615,2.0247552452567,1.2912382601151233,0.7335169851415768,-0.8079441528794624
+zs_cal_s13,BDV5,BD,generated,1008,46,0.04563492063492063,0.33276637508960355,0.25072952960831485,0.0820368454812887,0.22571081197418238,0.20030218902635752,0.025408622947824866,0.549239130674145,0.41034662485343354,0.13889250582071144,0.30009437832312336,-0.03157762368948769,0.27718619898113267,1.5018415599898298,-0.41540663695237445,-0.6534453412611588,-0.34085714454001514,1.0182795112411467,1.780919948993941,1.0977362418822596,0.6831837071116813,-0.43246751502451375
+zs_cal_s13,BDV6,BD,generated,1121,50,0.04460303300624442,0.33805584224967355,0.24800468703775716,0.0900511552119164,0.2134765519529803,0.18191497191163214,0.03156158004134815,0.5732489437014019,0.4527907237989986,0.1204582199024033,0.3530261216010639,0.07782378722577273,0.0847398748405533,0.6698771458448082,-0.31861184335503423,-0.49781387424799955,-0.46405890614422063,0.3480775999733256,1.8677826659747,1.2408876744518669,0.6268949915228332,-0.39024885453709174
+zs_cal_s13,HC1,HC,generated,907,44,0.04851157662624035,0.3041479461045904,0.24861698107903105,0.05553096502555935,0.2069290949720681,0.1875653823200712,0.019363712651996906,0.5985152363586401,0.4774330750311376,0.12108216132750255,-0.00706600643197417,-0.14826017797711538,0.22524416033266886,0.8306841951221919,-0.8029927585111085,-0.7437720579165248,-0.42923069051372587,0.4235407999546643,1.8930083094027739,1.270812924976795,0.6221953844259789,-0.464997550531884
+zs_cal_s13,HC10,HC,generated,575,14,0.02434782608695652,0.35979896294192537,0.2487726972154757,0.11102626572644966,0.21803520541073834,0.18237181562573104,0.0356633897850073,0.6035487033192941,0.47863017862941626,0.12491852468987785,0.7563118114176979,0.12649745264230183,0.05988878390776097,1.1541963141538019,-0.692017946163941,-0.8814285262093013,-1.1447552009664095,0.22138823062156152,1.8708210071189555,1.2018393436948038,0.6689816634241517,-0.8034887739049608
+zs_cal_s13,HC2,HC,generated,548,14,0.025547445255474453,0.300092123629704,0.2565894159772613,0.043502707652442685,0.16087196566565348,0.18933265598691826,-0.028460690321264775,0.5672320441660045,0.48895952772788687,0.07827251643811761,-0.011001126362104825,0.01883604953964492,0.4233568941057704,1.3200492130078825,-1.4282147780525765,-1.0602816168550557,-0.7521358802401006,0.5021480900977892,1.7579780470720203,1.3262220722015412,0.4317559748704791,-0.7793379038960409
+zs_cal_s13,HC3,HC,generated,461,9,0.019522776572668113,0.3275314770471576,0.24033129342374523,0.08720018362341239,0.2002225997060028,0.17626622392141753,0.023956375784585288,0.6267416476301163,0.49166934757275055,0.13507230005736576,0.177504263897345,0.19973631493004074,0.3650279785739821,1.2285580145223463,-1.6387858388137362,-0.9688630770225312,-0.9424163511974787,0.1862829948202529,1.8798197773619851,1.3103325045575294,0.5694872728044558,-0.9049103002413542
+zs_cal_s13,HC4,HC,generated,828,43,0.051932367149758456,0.3531638141884516,0.24894823039663547,0.10421558379181614,0.21232883133080527,0.17417655911221447,0.0381522722185908,0.5684965558296676,0.45865072416386415,0.10984583166580347,0.43732049614140084,0.15303128533202515,0.07413560940541547,1.1862758263314819,-0.2669966722740881,-0.3948522045161353,-0.5126059549709382,0.7732647767578948,1.8823422588761667,1.201795162804725,0.6805470960714417,-0.39768485089305233
+zs_cal_s13,HC5,HC,generated,255,16,0.06274509803921569,0.35210741627876996,0.26714266744241516,0.0849647488363548,0.21310584528965212,0.17319929275964557,0.03990655253000655,0.6353520665035384,0.4830047330949276,0.15234733340861079,0.6582999523258215,0.19783170413602627,0.31687400617599404,1.2528374437466228,-0.6843309899205338,-0.80829015528068,-0.7064611545520503,0.5212843021068247,2.0294396022977246,1.3171058106433067,0.7123337916544179,-0.6759060551678508
+zs_cal_s13,HC6,HC,generated,256,5,0.01953125,0.30440008826477316,0.23449931073651706,0.0699007775282561,0.2024737216520623,0.17630359298912268,0.026170128662939607,0.6151670350405216,0.49945434512281756,0.11571268991770406,-0.014745905198074283,0.15012283602116921,0.24352739746295346,1.4715952371604049,-2.0652130709353576,-1.2051871965208585,-1.366401165094542,0.20799013842149852,1.873829384780501,1.3010463537460746,0.5727830310344264,-0.988942433972307
+zs_cal_s13,HC7,HC,generated,718,20,0.027855153203342618,0.29727165681321693,0.2478405585449707,0.04943109826824624,0.19749361637464474,0.1891699678436847,0.008323648530960043,0.579885720650757,0.4908830877116366,0.08900263293912047,0.34241577897405084,0.20302752319684902,0.31320028176058934,0.9740813419796429,-1.0776886074442602,-0.8014821805663123,-0.8280558983209872,0.1875643984061729,1.8710933105088887,1.2471062418300272,0.6239870686788616,-0.7945741018910852
+zs_cal_s13,HC8,HC,generated,531,11,0.02071563088512241,0.3385623106467626,0.23845054087585116,0.10011176977091146,0.18951036464133708,0.1729309302748723,0.01657943436646478,0.6188310165324693,0.4643454611885286,0.1544855553439407,0.4677107706594954,-0.08942786301235749,0.21754063125671244,0.6011902547313464,-1.1104402949318468,-1.1417296251896587,-0.987955221586401,-0.2989460879983967,1.8531914723867096,1.2043781201194876,0.6488133522672219,-0.8007815627649661
+zs_cal_s13,HC9,HC,generated,430,18,0.04186046511627907,0.3463928544484605,0.23091482673094163,0.11547802771751889,0.21795535356378704,0.17830687572538326,0.03964847783840378,0.6209849098016598,0.47474761493106266,0.1462372948705971,0.5736060655442171,-0.19249845616651937,0.22299812189486795,1.463016786270668,-0.5832465303671122,-1.0346281890129954,-0.7696871656729404,0.7303283116736093,1.9714993160898078,1.220002217152989,0.7514970989368188,-0.5948883352434216

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_cal_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.12802048528060964,0.1779046018247111,0.625,0.25,0.3828125,8,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.33069566099537834,0.11691857219939984,0.4807049024323673,-0.40565107554185803,0.559799665637204,-0.1484480060036931,0.40448897656491234
+zs_cal_s13,BD,ifng_response_log2fc_high_vs_other,-2.7590355350708657,-2.775921709692703,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.7305147341590018,0.2582759611402591,1.2917886717035993,-3.7432354646591937,-1.8048121393402472,-3.3697611363865576,-2.148309933755174
+zs_cal_s13,BD,ifng_response_c1q_high_minus_other,0.0767027908299641,0.09187018186459311,1.0,1.0,0.0078125,8,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.05212939805437045,0.01843052543170908,0.06547845190967706,0.006140308471070499,0.16367352585605735,0.033121523424547245,0.12028405823538096
+zs_cal_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.0840514117692662,-0.06555161307103757,0.375,-0.25,0.3125,8,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.20728025995952326,0.07328463871174465,0.2568937717834708,-0.41404042819749826,0.22548704467346128,-0.25734204573627295,0.08923922219774055
+zs_cal_s13,BD,proinflammatory_log2fc_high_vs_other,-1.9983899008991224,-1.9231765671775187,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.4688538234410062,0.16576485897018786,0.4603074910208309,-2.7591574317445096,-1.2423625467852326,-2.390361506481886,-1.6064182953163586
+zs_cal_s13,BD,proinflammatory_c1q_high_minus_other,0.01791378661654148,0.011820436078583449,0.5,0.0,0.640625,8,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.06410266184373864,0.02266371344090787,0.07855429010264317,-0.05706444498681196,0.13709331442499312,-0.03567737981697862,0.07150495305006158
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.4269441124336034,0.39141638690303726,1.0,1.0,0.0078125,8,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1474799712963813,0.052142043896434294,0.15165024886501022,0.2934447919852085,0.7251496975198714,0.3036477709084794,0.5502404539587274
+zs_cal_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-1.9069729922881096,-1.8623998573437577,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.42830301355165784,0.1514279826425055,0.44168329025428243,-2.6918632331635757,-1.2664331431924527,-2.265043272414349,-1.54890271216187
+zs_cal_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.1277789899412359,0.12799784404152856,1.0,1.0,0.0078125,8,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.05346667518131475,0.01890332429410307,0.04115618750339617,0.03173046788029593,0.21953162788918196,0.08307973087967674,0.17247824900279507
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.2336566273818717,0.7938589057249972,0.875,0.75,0.015625,8,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,1.2867632413499888,0.45493950687007956,1.3695915252554196,-0.23870187887249172,3.8504707923212824,0.15789563642921967,2.309417618334524
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.9868622614164497,-1.3076811439232192,0.125,-0.75,0.0390625,8,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.9037193692264908,0.31951304713484047,1.1339350756695632,-1.9700560092036365,0.760957075654081,-1.7423905613718018,-0.23133396146109764
+zs_cal_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6293280103659116,0.6025668666486973,1.0,1.0,0.0078125,8,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.24387109397872245,0.08622145214386823,0.27502349990527586,0.3528377603991695,1.0368885888413955,0.42544667361897415,0.833209347112849
+zs_cal_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.04315671133447388,0.054925286147473336,0.5,0.0,0.640625,8,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3467173672388608,0.12258310076487249,0.3764227384922775,-0.5763152516404797,0.5288974716428506,-0.24670626156958556,0.33301968423853334
+zs_cal_s13,HC,ifng_response_log2fc_high_vs_other,-3.2203684409523516,-3.301354330316302,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5692324566459744,0.20125406508292296,0.683347945809345,-4.055103779577271,-2.2800437939088694,-3.696258683979064,-2.7444781979256394
+zs_cal_s13,HC,ifng_response_c1q_high_minus_other,0.05531705740514278,0.048306081750736724,0.75,0.5,0.0390625,8,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.06635480270413346,0.023459965478194116,0.058502347108344795,-0.03648277302113423,0.14669334182880936,-0.0001569459061245282,0.1107910607164101
+zs_cal_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.06794184118607738,-0.05419868346985388,0.25,-0.5,0.1953125,8,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.1988787847475587,0.07031426866456923,0.13840336543544637,-0.3352033654902218,0.3199879622925687,-0.23420866610332836,0.0983249837311736
+zs_cal_s13,HC,proinflammatory_log2fc_high_vs_other,-2.175141725261125,-2.224358155518373,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.4198127872438649,0.1484262343444811,0.5108043347417055,-2.868379475314681,-1.5056448632599457,-2.5261139985646786,-1.824169451957571
+zs_cal_s13,HC,proinflammatory_c1q_high_minus_other,0.00981989629783176,0.017932793849539136,0.625,0.25,0.7421875,8,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.04573909532240754,0.01617121223390613,0.07462966264138943,-0.06300201642842668,0.06189174696302285,-0.028418944328116598,0.04805873692378012
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.3919972011200598,0.42304946694262735,1.0,1.0,0.0078125,8,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.16704788487979463,0.05906034609068626,0.17649361874335717,0.10245197179456692,0.579254242339945,0.25234167444656,0.5316527277935597
+zs_cal_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-2.344945138388579,-2.167383862368699,0.0,-1.0,0.0078125,8,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.4884889877890186,0.17270693790028382,0.5041410489910887,-3.345905261451791,-1.7931824128794467,-2.753332152165919,-1.9365581246112389
+zs_cal_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.1235004367550325,0.12083191272918453,1.0,1.0,0.0078125,8,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.05995267344043122,0.021196470969995766,0.05157574555718941,0.019673809614966287,0.21552981802564225,0.07337874745119809,0.1736221260588669
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.9779255910026357,1.834320625055605,1.0,1.0,0.0078125,8,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.8100238336003067,0.2863866728307502,1.1942793685597581,0.9340098236731835,3.263492366246434,1.3007287190940755,2.655122462911196
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.7893227216659455,-0.892579792973436,0.25,-0.5,0.109375,8,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,1.0623719508409757,0.3756052052910177,1.1816901429285434,-2.653600961816839,0.6610654441577206,-1.6774878991215723,0.0988424557896812
+zs_cal_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7805161458176917,0.7514220099122093,1.0,1.0,0.0078125,8,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.2202443320120517,0.07786813034181159,0.19561637212692395,0.504479507163218,1.1928763183119138,0.5963872763852561,0.9646450152501272

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_cal_s13/rule_B/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_cal_s13,BDU1,BD,generated,632,0,0.0,,0.23950445899061487,,,0.17969605161089827,,,0.46432582443338655,,,,,,,,,,,1.2957141494484117,,
+zs_cal_s13,BDU2,BD,generated,330,2,0.006060606060606061,0.3949797115710573,0.23130618571499997,0.16367352585605735,0.1889240213915058,0.1642385588176857,0.024685462573820094,0.5602481221885812,0.43552055232241293,0.12472756986616829,0.559799665637204,-0.08698412361244823,0.31913842997599845,0.6255563322651136,-2.0584684147579018,-1.8474579083271718,-1.8360659002199788,-1.1991993123153142,1.7280479764579166,1.2430535650125725,0.48499441144534416,-1.264896436505888
+zs_cal_s13,BDU3,BD,generated,592,1,0.0016891891891891893,0.27744550607407953,0.27130519760300903,0.006140308471070499,0.12932171546226984,0.1863861604490818,-0.05706444498681196,0.5401026240017562,0.4414542154793932,0.09864840852236306,-0.07270916607391203,-0.41404042819749826,0.3094788311102225,1.910716821078446,-3.7432354646591937,-2.7591574317445096,-2.6918632331635757,-1.4161629755311242,1.9123633393324975,1.2412286047683552,0.6711347345641423,-1.6492836131391573
+zs_cal_s13,BDV1,BD,generated,901,6,0.006659267480577136,0.3696737410367212,0.2691605284697456,0.1005132125669756,0.23726289326734162,0.19029079614524924,0.04697209712209238,0.6148858146885019,0.457690139226711,0.15719567546179092,0.3729097239011773,0.22548704467346128,0.44399337071340333,0.9621614791848806,-1.8048121393402472,-1.2423625467852326,-1.2664331431924527,-0.4582141457922801,1.8886735330889575,1.2491595733220697,0.6395139597668877,-1.0788085316025635
+zs_cal_s13,BDV2,BD,generated,565,2,0.0035398230088495575,0.35386269165624795,0.25307613726101635,0.1007865543952316,0.1675500577750636,0.1685946481917168,-0.001044590416653196,0.4609932460872497,0.42926277820695374,0.03173046788029593,0.3999842352385224,-0.044119102529626926,0.34590819277984763,0.5706214640232272,-2.6019286503276833,-1.9988952260278656,-2.0505019826652418,-1.7105838569141656,1.6292968961718701,1.2764591357727006,0.3528377603991695,-1.3792794521953764
+zs_cal_s13,BDV3,BD,generated,1026,3,0.0029239766081871343,0.2905873859107994,0.24976537449267014,0.04082201141812927,0.16042624811172349,0.1819928958113443,-0.021566647699620828,0.6146902785294776,0.46744567217051897,0.14724460635895859,-0.40565107554185803,-0.2949794173187839,0.43692458102622694,1.8669854202668574,-3.3402131106601045,-2.185970979728331,-1.8887338144675363,-0.376279429636637,2.1009448036902065,1.1882908613679286,0.9126539423222779,-1.4409600687274347
+zs_cal_s13,BDV4,BD,generated,678,2,0.0029498525073746312,0.26064357858939197,0.24269722838632965,0.017946350203062317,0.1318520012995657,0.1790349133150261,-0.047182912015460404,0.5951314998091553,0.4832460544749156,0.11188544533423966,0.08713293449135673,-0.17600240300310496,0.7251496975198714,3.8504707923212824,-3.4815297412210517,-2.4456286046739213,-2.222482047863606,0.760957075654081,2.3423783158954308,1.3054897270540353,1.0368885888413955,-1.7130525704266768
+zs_cal_s13,BDV5,BD,generated,1008,4,0.003968253968253968,0.3540870226630538,0.254076407018594,0.10001061564445979,0.26263600117049685,0.20121798724052423,0.06141801392997262,0.5474321863192164,0.4161640681023276,0.13126811821688883,0.2686762691580655,0.04318066248595643,0.2934447919852085,-0.23870187887249172,-2.092181990543022,-1.6803139749711233,-1.6459283076776303,-1.9700560092036365,1.4984220417165217,1.127441129658953,0.37098091205756867,-1.2100279922561628
+zs_cal_s13,BDV6,BD,generated,1121,2,0.001784121320249777,0.3356016057419541,0.25187185765722764,0.08372974808472644,0.3201714374278094,0.18307812300281628,0.13709331442499312,0.6773034825885746,0.4577718546993927,0.21953162788918196,-0.18597870456567875,0.07504647334791496,0.5415150043580488,0.3214425887876582,-2.9499147690577234,-1.8273325349348228,-1.653775509054857,-1.5253594375925217,1.8334597316836052,1.2678399581530984,0.5656197735305069,-1.3391742615838729
+zs_cal_s13,HC1,HC,generated,907,2,0.002205071664829107,0.29527225919865385,0.2512137235153685,0.04405853568328533,0.15802776605783894,0.18857209899323402,-0.030544332935395074,0.5814417787062012,0.48309008905440826,0.09835168965179292,-0.09167656698129252,-0.3352033654902218,0.4205864802212394,2.713293118431353,-3.2970856006394174,-2.4077570054265083,-2.2313181066857783,0.28292903519886764,2.1058165866680083,1.299217996348464,0.8065985903195443,-1.62749492472598
+zs_cal_s13,HC10,HC,generated,575,1,0.0017391304347826088,0.30393817562905884,0.2513845478108707,0.05255362781818812,0.2450242507801053,0.18313250381708246,0.06189174696302285,0.6968266567031153,0.481296838677473,0.21552981802564225,-0.11271468294562399,0.005003774857525804,0.5710477537222116,2.048481687800995,-3.7407348922765618,-2.29364218966772,-2.5430680539945842,-1.50285909072082,2.0164131040243793,1.2167368515826233,0.799676252441756,-1.7643301374839917
+zs_cal_s13,HC2,HC,generated,548,1,0.0018248175182481751,0.22128460040166592,0.25776737342280015,-0.03648277302113423,0.1257185088138396,0.1887205252422663,-0.06300201642842668,0.5105970990591281,0.4909232894441618,0.019673809614966287,-0.15789327941260592,-0.2784440930084584,0.10245197179456692,1.2192350257414044,-4.055103779577271,-2.868379475314681,-3.345905261451791,-2.653600961816839,1.840811258454218,1.336331751291,0.504479507163218,-1.8757521510214732
+zs_cal_s13,HC3,HC,generated,461,0,0.0,,0.24203368312572074,,,0.17673391889335088,,,0.4943063339079269,,,,,,,,,,,1.3214504773454687,,
+zs_cal_s13,HC4,HC,generated,828,3,0.0036231884057971015,0.4003709407292515,0.2538294449082116,0.14654149582103992,0.20104463719520205,0.1760673996833059,0.02497723751189615,0.5988368576888586,0.4638662542984758,0.13497060339038286,0.5288974716428506,-0.028213221620862594,0.42551245366401524,2.5595431355002645,-2.2800437939088694,-1.838208875244642,-1.7931824128794467,0.6610654441577206,2.2086127895156906,1.233604947351318,0.9750078421643726,-1.3718905775945958
+zs_cal_s13,HC5,HC,generated,255,2,0.00784313725490196,0.3369748933611924,0.2719638987844868,0.06501099457670562,0.14911954713201966,0.17591338102737425,-0.026793833895354585,0.6142994074665749,0.49160144450122983,0.12269796296534502,0.32531647824523896,-0.03382707378061048,0.579254242339945,1.4651900083172367,-2.8844586656363234,-2.1550741213690254,-2.0694747442959374,-1.1439159024481955,1.9445101407857375,1.357194869956294,0.5873152708294436,-1.5175114353582768
+zs_cal_s13,HC6,HC,generated,256,0,0.0,,0.2358645602976158,,,0.17681472831457073,,,0.5017143585977728,,,,,,,,,,,1.312233522320966,,
+zs_cal_s13,HC7,HC,generated,718,4,0.005571030640668524,0.23177449832839425,0.24931518908591083,-0.017540690757516575,0.24699578957887414,0.18907916908132963,0.05791662049754451,0.583540821161674,0.49285706771861465,0.0906837534430594,-0.5763152516404797,0.3199879622925687,0.2052918939912478,0.9340098236731835,-3.461482655864243,-1.5056448632599457,-2.1034496180516205,-1.1486403813988915,1.9357346270314384,1.2607270091028164,0.675007617928622,-1.4471948620486963
+zs_cal_s13,HC8,HC,generated,531,3,0.005649717514124294,0.2819907425284534,0.24028881523668869,0.04170192729176472,0.1841012178019218,0.17321286761473967,0.010888350187182122,0.5858394659062311,0.4668736034132071,0.11896586249302404,0.22811238249146434,-0.07457029315909729,0.3592133040732154,1.6201595623102147,-2.73841507972294,-1.918568018468634,-2.0386893214405304,-0.6412436834986767,1.9170137661703075,1.2138459987876449,0.7031677673826626,-1.41288108318423
+zs_cal_s13,HC9,HC,generated,430,1,0.002325581395348837,0.38210098520413827,0.2354076433753289,0.14669334182880936,0.2230914537485194,0.17986605526633462,0.04322539848218479,0.6675639845341208,0.4804339900780735,0.18712999445604728,0.2015271392762392,-0.11826841957946302,0.47261950915403705,3.263492366246434,-3.3056230599931875,-2.413859253337841,-2.6344735883089436,-0.1683162328007295,2.441562422587114,1.2486861042752002,1.1928763183119138,-1.6941099140568925