Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/scoring_support.json +69 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/receipts/score.json +52 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/per_donor.csv +23 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/summary.json +212 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/scoring_support.json
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-score-binding.v1",
|
| 3 |
+
"support_sha256": "b76459a585604c60e588279b889094c972e621e2aa6c28ecf5aa163ffe5481bf",
|
| 4 |
+
"cohort": "immicro",
|
| 5 |
+
"unit": "fold0_n10",
|
| 6 |
+
"test_sample_ids": [
|
| 7 |
+
"HS3",
|
| 8 |
+
"HS6",
|
| 9 |
+
"HS7",
|
| 10 |
+
"HS13",
|
| 11 |
+
"HS18",
|
| 12 |
+
"HS31",
|
| 13 |
+
"HS34",
|
| 14 |
+
"HS37",
|
| 15 |
+
"HS38",
|
| 16 |
+
"HS52",
|
| 17 |
+
"HS58",
|
| 18 |
+
"HS60",
|
| 19 |
+
"HS66",
|
| 20 |
+
"HS81",
|
| 21 |
+
"HS82",
|
| 22 |
+
"HS83",
|
| 23 |
+
"HS85",
|
| 24 |
+
"HS86",
|
| 25 |
+
"HS95",
|
| 26 |
+
"HS98",
|
| 27 |
+
"HS101",
|
| 28 |
+
"HS107"
|
| 29 |
+
],
|
| 30 |
+
"test_donor_ids": [
|
| 31 |
+
"HS3",
|
| 32 |
+
"HS6",
|
| 33 |
+
"HS7",
|
| 34 |
+
"HS13",
|
| 35 |
+
"HS18",
|
| 36 |
+
"HS31",
|
| 37 |
+
"HS34",
|
| 38 |
+
"HS37",
|
| 39 |
+
"HS38",
|
| 40 |
+
"HS52",
|
| 41 |
+
"HS58",
|
| 42 |
+
"HS60",
|
| 43 |
+
"HS66",
|
| 44 |
+
"HS81",
|
| 45 |
+
"HS82",
|
| 46 |
+
"HS83",
|
| 47 |
+
"HS85",
|
| 48 |
+
"HS86",
|
| 49 |
+
"HS95",
|
| 50 |
+
"HS98",
|
| 51 |
+
"HS101",
|
| 52 |
+
"HS107"
|
| 53 |
+
],
|
| 54 |
+
"arm_bindings": {
|
| 55 |
+
"lora": {
|
| 56 |
+
"arm": "lora",
|
| 57 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n10/lora.npz",
|
| 58 |
+
"npz_sha256": "1923f1ca34526e6e32c7f60a25a5845680688c9b6a511d00c874085e0de4455f",
|
| 59 |
+
"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n10/lora.log",
|
| 60 |
+
"receipt_sha256": "85c114a555d2552f62a792b24c322146986ffb92dd61baa5c0ef7e52ab0bdce0",
|
| 61 |
+
"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n10/lora/RUN.json",
|
| 62 |
+
"source_binding_sha256": "5b8128b3f19382cc87601a099e0054f48c3ed6ceb2aed9e7862b97c47485ff7d",
|
| 63 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n10/test_raw.npz",
|
| 64 |
+
"condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
|
| 65 |
+
"checkpoint_sha256": "0ce14180d6beca8c9c4d0e994525c5e297af44de2c6e8f33f0a643f8634a4bac",
|
| 66 |
+
"support_sha256": "b76459a585604c60e588279b889094c972e621e2aa6c28ecf5aa163ffe5481bf"
|
| 67 |
+
}
|
| 68 |
+
}
|
| 69 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/receipts/score.json
ADDED
|
@@ -0,0 +1,52 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"state": "completed",
|
| 3 |
+
"stage": "score",
|
| 4 |
+
"at": "2026-10-15T12:00:14.970964+00:00",
|
| 5 |
+
"outputs": [
|
| 6 |
+
{
|
| 7 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/generated_cells.parquet",
|
| 8 |
+
"sha256": "9144f21d1e2f1f5bbe4ef8a9eb9133a13ea517fa42e1354f5ef2a0fff5b912e2",
|
| 9 |
+
"bytes": 291391
|
| 10 |
+
},
|
| 11 |
+
{
|
| 12 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/labels/labels.manifest.json",
|
| 13 |
+
"sha256": "cd379ab38a3287f0ecb06989d0ee682f0569cab6c361896e7b4f75999e4d1b6b",
|
| 14 |
+
"bytes": 5114
|
| 15 |
+
},
|
| 16 |
+
{
|
| 17 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/labels/labels.parquet",
|
| 18 |
+
"sha256": "c7a5319becc87d7457990299c14a6f527ec858620e7de9a21a46ac6a134427e6",
|
| 19 |
+
"bytes": 820914
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/per_donor.csv",
|
| 23 |
+
"sha256": "af21647a0c714de2763c7158c5282d54083f5cf90092673116ee2d3c7f92fe83",
|
| 24 |
+
"bytes": 9188
|
| 25 |
+
},
|
| 26 |
+
{
|
| 27 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/summary.json",
|
| 28 |
+
"sha256": "9369c8938cd5ab6c32230699419ad17d71eb13bc25770a47d150b1dc4e619eed",
|
| 29 |
+
"bytes": 7553
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/scoring_support.json",
|
| 33 |
+
"sha256": "f6da235cd02b1ef841ccf7864fdde2a23aed76ce2945911a5561fc4019de315b",
|
| 34 |
+
"bytes": 2096
|
| 35 |
+
}
|
| 36 |
+
],
|
| 37 |
+
"support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252",
|
| 38 |
+
"binding": {
|
| 39 |
+
"arm": "lora",
|
| 40 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
|
| 41 |
+
"npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
|
| 42 |
+
"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.log",
|
| 43 |
+
"receipt_sha256": "c9b3649a588c9227f77d5d53a1ba0724ae5247cb086e76d63f1c5291535fc67f",
|
| 44 |
+
"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/RUN.json",
|
| 45 |
+
"source_binding_sha256": "3e4b3dcd38fefcc2828203c86d0a4476eb9928e1a20e6e2bb9375719ef578e84",
|
| 46 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
|
| 47 |
+
"condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
|
| 48 |
+
"checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
|
| 49 |
+
"support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252"
|
| 50 |
+
},
|
| 51 |
+
"reuse": {}
|
| 52 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/per_donor.csv
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
|
| 2 |
+
lora,HS3,DB3,1500,4617,150,0.6946666666666667,0.6484730344379467,0.06733333333333333,0.06952566601689408,0.11733333333333333,0.17782109594975093,0.06,0.07060862031622266,0.048,0.028589993502274202,0.012666666666666666,0.004981589776911414,0.14657743123240205,0.04060118700472884,0.9061830541150611,3,False,0.9866666666666667,0.98,1.0,1.0,11.733333333333333,17.782109594975093,2806.5,2186.0
|
| 3 |
+
lora,HS6,DB3,1500,4222,150,0.5486666666666666,0.4836570345807674,0.058666666666666666,0.037423022264329704,0.256,0.3147797252486973,0.068,0.13003315963998105,0.05733333333333333,0.024869729985788725,0.011333333333333334,0.009237328280435813,0.24162576977735664,0.3824588765473767,0.910720963489262,3,False,1.0,0.9066666666666666,1.0,0.9866666666666667,25.6,31.47797252486973,2671.0,2457.5
|
| 4 |
+
lora,HS7,DB1,1500,4271,150,0.6966666666666667,0.7035822992273473,0.06133333333333333,0.03839850152189183,0.12133333333333333,0.13135097166939827,0.068,0.09740107703114025,0.042,0.02130648560056193,0.010666666666666666,0.0079606649496605,0.09266869585577153,0.17462025766050882,0.9053878584275726,2,False,0.9933333333333333,1.0,0.9933333333333333,1.0,12.133333333333333,13.135097166939827,2710.5,1748.0
|
| 5 |
+
lora,HS13,DB5,1500,4792,150,0.6066666666666667,0.6156093489148581,0.082,0.056343906510851416,0.21066666666666667,0.2166110183639399,0.056666666666666664,0.08764607679465776,0.034,0.02003338898163606,0.01,0.0037562604340567614,0.09173288814691147,0.07950263318013584,0.9141505429312837,4,False,0.9933333333333333,0.88,0.9933333333333333,0.9933333333333333,21.066666666666666,21.66110183639399,2969.5,2176.0
|
| 6 |
+
lora,HS18,DB4,1500,3348,150,0.74,0.6633811230585425,0.06,0.05734767025089606,0.122,0.18309438470728792,0.03666666666666667,0.07198327359617682,0.028,0.016129032258064516,0.013333333333333334,0.008064516129032258,0.19282198327359612,0.056830454472214534,0.9035683268884944,10,False,1.0,0.94,0.9933333333333333,0.9933333333333333,12.2,18.309438470728793,3064.0,2108.0
|
| 7 |
+
lora,HS31,DB3,1500,4830,150,0.6433333333333333,0.5956521739130435,0.07933333333333334,0.07039337474120083,0.13466666666666666,0.21884057971014492,0.088,0.08385093167701864,0.042666666666666665,0.02546583850931677,0.012,0.005797101449275362,0.1683478260869565,0.08982859354260735,0.9119754697226327,1,True,0.9866666666666667,0.96,0.9933333333333333,1.0,13.466666666666665,21.884057971014492,2755.5,2217.5
|
| 8 |
+
lora,HS34,DB5,1500,4363,150,0.694,0.7073114829245931,0.07866666666666666,0.04859041943616777,0.14733333333333334,0.16983726793490717,0.04666666666666667,0.0550080220032088,0.024666666666666667,0.013981205592482237,0.008666666666666666,0.005271602108640843,0.08831354572541826,0.14554772243505307,0.9119950399352901,8,False,0.9866666666666667,0.8133333333333334,0.9933333333333333,0.9866666666666667,14.733333333333334,16.983726793490717,2985.5,2176.0
|
| 9 |
+
lora,HS37,DB6,1500,2127,150,0.5546666666666666,0.5763986835919135,0.132,0.14997649271274094,0.18333333333333332,0.18288669487541137,0.066,0.06535025858015985,0.048,0.021626704278326282,0.016,0.0037611659614480487,0.07941701927597557,0.17642904039178112,0.9123254024697023,10,False,0.9933333333333333,0.9066666666666666,1.0,0.9866666666666667,18.333333333333332,18.28866948754114,2873.0,2099.0
|
| 10 |
+
lora,HS38,DB2,1500,3952,150,0.5853333333333334,0.4534412955465587,0.06066666666666667,0.06022267206477733,0.216,0.27631578947368424,0.08533333333333333,0.16776315789473684,0.046,0.03365384615384615,0.006666666666666667,0.00860323886639676,0.2893643724696357,0.3979973492276381,0.9144851596768439,3,False,0.9933333333333333,0.9866666666666667,1.0,1.0,21.6,27.631578947368425,2601.5,1448.0
|
| 11 |
+
lora,HS52,DB1,1500,4286,150,0.6793333333333333,0.7473168455436304,0.07666666666666666,0.04316378908072795,0.12733333333333333,0.12085860942603827,0.074,0.06276248250116659,0.03266666666666666,0.017498833411105925,0.01,0.008399440037330844,0.13596702442059416,0.23339752310597672,0.9056660105882113,3,False,0.9933333333333333,0.9733333333333334,1.0,0.9866666666666667,12.733333333333333,12.085860942603826,2570.0,1848.5
|
| 12 |
+
lora,HS58,DB7,1500,1299,150,0.6813333333333333,0.6605080831408776,0.03866666666666667,0.029253271747498075,0.14666666666666667,0.15550423402617397,0.09333333333333334,0.1170130869899923,0.029333333333333333,0.03156274056966898,0.010666666666666666,0.006158583525789068,0.06949345650500384,0.13904887966629118,0.9011835139121794,11,False,1.0,0.9066666666666666,1.0,1.0,14.666666666666666,15.550423402617398,2144.5,1944.0
|
| 13 |
+
lora,HS60,DB6,1500,2659,150,0.654,0.6288078224896577,0.056,0.04061677322301617,0.14666666666666667,0.16058668672433246,0.108,0.14328694998119593,0.03133333333333333,0.020308386611508085,0.004,0.006393380970289583,0.10320070201830268,0.12991818939150382,0.907554076616269,16,False,1.0,0.92,1.0,0.9933333333333333,14.666666666666666,16.058668672433246,2645.5,2014.0
|
| 14 |
+
lora,HS66,DB4,1500,4857,150,0.6466666666666666,0.6448424953675108,0.108,0.10376775787523163,0.132,0.16512250360304714,0.06066666666666667,0.07020794729256744,0.04,0.012559192917438749,0.012666666666666666,0.0035001029442042414,0.08532756845789576,0.09427105876197542,0.903756030741563,16,False,1.0,0.8733333333333333,1.0,0.98,13.200000000000001,16.512250360304716,2819.0,2041.0
|
| 15 |
+
lora,HS81,DB7,1500,1638,150,0.7233333333333334,0.721001221001221,0.07533333333333334,0.04212454212454213,0.11666666666666667,0.13553113553113552,0.04733333333333333,0.06288156288156288,0.02666666666666667,0.03296703296703297,0.010666666666666666,0.005494505494505495,0.08142612942612948,0.19387054279631524,0.9021766945746922,10,False,0.9933333333333333,0.86,1.0,0.98,11.666666666666666,13.553113553113553,3037.5,2240.5
|
| 16 |
+
lora,HS82,DB2,1500,4201,150,0.718,0.6553201618662223,0.11933333333333333,0.1309212092358962,0.08733333333333333,0.14782194715543917,0.046,0.031183051654368008,0.024,0.02499404903594382,0.005333333333333333,0.009759581052130446,0.15499357295881927,0.18293033059828231,0.9067768208580079,1,True,1.0,1.0,0.9933333333333333,1.0,8.733333333333333,14.782194715543916,3043.0,1587.0
|
| 17 |
+
lora,HS83,DB6,1500,2410,150,0.65,0.7128630705394191,0.08466666666666667,0.08049792531120332,0.18066666666666667,0.14481327800829877,0.04533333333333334,0.045228215767634854,0.026,0.012448132780082987,0.013333333333333334,0.004149377593360996,0.12572614107883817,0.1880345194642001,0.9131498968674202,3,False,1.0,0.9333333333333333,0.9933333333333333,0.9933333333333333,18.066666666666666,14.481327800829877,2918.0,2373.0
|
| 18 |
+
lora,HS85,DB5,1500,4216,150,0.628,0.5785104364326376,0.08266666666666667,0.07756166982922201,0.19466666666666665,0.22936432637571158,0.058666666666666666,0.0896584440227704,0.028666666666666667,0.021347248576850095,0.007333333333333333,0.003557874762808349,0.13137887413029734,0.13514298327096805,0.9112570930351678,13,False,1.0,0.78,1.0,0.9666666666666667,19.466666666666665,22.93643263757116,2924.0,2171.5
|
| 19 |
+
lora,HS86,DB7,1500,1111,150,0.646,0.6561656165616562,0.07133333333333333,0.0711071107110711,0.16266666666666665,0.162016201620162,0.07733333333333334,0.0711071107110711,0.03133333333333333,0.034203420342034205,0.011333333333333334,0.0054005400540054005,0.02607140714071407,0.07179394704932163,0.9007588572099332,18,False,1.0,0.9133333333333333,1.0,1.0,16.266666666666666,16.2016201620162,2454.0,1989.0
|
| 20 |
+
lora,HS95,DB1,1500,4264,150,0.6253333333333333,0.6458724202626641,0.13333333333333333,0.08348968105065666,0.13333333333333333,0.13860225140712945,0.052,0.09826454033771106,0.03866666666666667,0.025093808630393996,0.017333333333333333,0.008677298311444653,0.14414509068167605,0.09728161934908136,0.9076790758673545,1,True,0.9933333333333333,1.0,0.9866666666666667,1.0,13.333333333333334,13.860225140712945,2787.0,1829.5
|
| 21 |
+
lora,HS98,DB2,1500,4959,150,0.5593333333333333,0.5366001209921355,0.06933333333333333,0.07360354910264166,0.24666666666666667,0.30490018148820325,0.06333333333333334,0.03891913692276669,0.044,0.03367614438394838,0.017333333333333333,0.012300867110304496,0.12500746118168987,0.3008904548210157,0.9185269532808491,1,True,0.9933333333333333,0.98,1.0,0.98,24.666666666666668,30.490018148820326,2804.0,1606.0
|
| 22 |
+
lora,HS101,DB4,1500,6549,150,0.6793333333333333,0.6659031913269201,0.06733333333333333,0.051152847763017255,0.138,0.192090395480226,0.072,0.05939838143227974,0.034666666666666665,0.026721636891128418,0.008666666666666666,0.004733547106428463,0.108180790960452,0.08013023802852969,0.9064263276905762,11,False,1.0,0.92,0.9933333333333333,0.9933333333333333,13.8,19.2090395480226,2331.5,1960.0
|
| 23 |
+
lora,HS107,DB1,1500,4445,150,0.7326666666666667,0.7313835770528684,0.062,0.031496062992125984,0.10266666666666667,0.14195725534308212,0.06066666666666667,0.0686164229471316,0.03133333333333333,0.02002249718785152,0.010666666666666666,0.006524184476940383,0.09448068991376081,0.19608442509403828,0.9007832490332567,1,True,0.9733333333333334,1.0,0.98,1.0,10.266666666666667,14.195725534308213,2876.5,1849.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/summary.json
ADDED
|
@@ -0,0 +1,212 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "immicro",
|
| 4 |
+
"written_utc": "2026-10-15T12:00:14.966876+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"immicro",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"2",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
|
| 17 |
+
"--no-contrast",
|
| 18 |
+
"--no-deg"
|
| 19 |
+
],
|
| 20 |
+
"arms": [
|
| 21 |
+
"lora"
|
| 22 |
+
],
|
| 23 |
+
"donors": [
|
| 24 |
+
"HS3",
|
| 25 |
+
"HS6",
|
| 26 |
+
"HS7",
|
| 27 |
+
"HS13",
|
| 28 |
+
"HS18",
|
| 29 |
+
"HS31",
|
| 30 |
+
"HS34",
|
| 31 |
+
"HS37",
|
| 32 |
+
"HS38",
|
| 33 |
+
"HS52",
|
| 34 |
+
"HS58",
|
| 35 |
+
"HS60",
|
| 36 |
+
"HS66",
|
| 37 |
+
"HS81",
|
| 38 |
+
"HS82",
|
| 39 |
+
"HS83",
|
| 40 |
+
"HS85",
|
| 41 |
+
"HS86",
|
| 42 |
+
"HS95",
|
| 43 |
+
"HS98",
|
| 44 |
+
"HS101",
|
| 45 |
+
"HS107"
|
| 46 |
+
],
|
| 47 |
+
"n_donors": 22,
|
| 48 |
+
"reference": {
|
| 49 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
|
| 50 |
+
"reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
|
| 51 |
+
"features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
|
| 52 |
+
"n_r1_cells": 3300,
|
| 53 |
+
"pca": {
|
| 54 |
+
"n_components": 50,
|
| 55 |
+
"explained_variance_ratio_sum": 0.305976539850235,
|
| 56 |
+
"n_fit_cells": 3300
|
| 57 |
+
},
|
| 58 |
+
"r2_control": {
|
| 59 |
+
"precision": 0.9957575757575757,
|
| 60 |
+
"coverage": 1.0,
|
| 61 |
+
"density": 2.6083333333333334,
|
| 62 |
+
"n_query": 3300,
|
| 63 |
+
"depth_matched": {
|
| 64 |
+
"precision": 0.9936363636363637,
|
| 65 |
+
"coverage": 1.0,
|
| 66 |
+
"density": 2.558878787878788
|
| 67 |
+
}
|
| 68 |
+
},
|
| 69 |
+
"observed_l1_loo_null_mean": 0.16302776481179745
|
| 70 |
+
},
|
| 71 |
+
"contrast_definition": {
|
| 72 |
+
"enabled": false,
|
| 73 |
+
"reason": "--no-contrast"
|
| 74 |
+
},
|
| 75 |
+
"deg_definition": {
|
| 76 |
+
"enabled": false,
|
| 77 |
+
"reason": "--no-deg"
|
| 78 |
+
},
|
| 79 |
+
"headline": {
|
| 80 |
+
"lora": {
|
| 81 |
+
"comp_l1": 0.12619402003264532,
|
| 82 |
+
"comp_l1_obs_loo_null": 0.16302776481179745,
|
| 83 |
+
"precision": 0.9945454545454545,
|
| 84 |
+
"coverage": 0.9287878787878788,
|
| 85 |
+
"precision_dm": 0.9960606060606061,
|
| 86 |
+
"coverage_dm": 0.9918181818181818,
|
| 87 |
+
"pb_r_median": 0.9071654487371384,
|
| 88 |
+
"pb_top1": 0.22727272727272727,
|
| 89 |
+
"mono_pct_gen": 15.56363636363636,
|
| 90 |
+
"mono_pct_obs": 18.503211518737277,
|
| 91 |
+
"median_umi_gen": 2768.0,
|
| 92 |
+
"median_umi_obs": 1976.0,
|
| 93 |
+
"seconds": 10.3
|
| 94 |
+
}
|
| 95 |
+
},
|
| 96 |
+
"per_arm": {
|
| 97 |
+
"lora": {
|
| 98 |
+
"arm": "lora",
|
| 99 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
|
| 100 |
+
"npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
|
| 101 |
+
"receipt_verified": true,
|
| 102 |
+
"generation": {
|
| 103 |
+
"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/checkpoint_ft.pt",
|
| 104 |
+
"checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
|
| 105 |
+
"input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
|
| 106 |
+
"input_condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
|
| 107 |
+
"seed": 20260928,
|
| 108 |
+
"steps": 50,
|
| 109 |
+
"support_readout": "bernoulli",
|
| 110 |
+
"weights": "ema"
|
| 111 |
+
},
|
| 112 |
+
"condition_for_broadcast": null,
|
| 113 |
+
"poisson": {
|
| 114 |
+
"seed": 20260916,
|
| 115 |
+
"rule": "whole NPZ, rows in NPZ order",
|
| 116 |
+
"nnz_whole_npz": 9910366,
|
| 117 |
+
"median_library_whole_npz_panel": 2769.0,
|
| 118 |
+
"n_rows_whole_npz": 33000
|
| 119 |
+
},
|
| 120 |
+
"annotation": {
|
| 121 |
+
"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
|
| 122 |
+
"zero_padded_model_genes": 1,
|
| 123 |
+
"label_counts": {
|
| 124 |
+
"T cell": 21581,
|
| 125 |
+
"Monocyte": 5136,
|
| 126 |
+
"B cell": 2587,
|
| 127 |
+
"NK cell": 2151,
|
| 128 |
+
"DC": 1184,
|
| 129 |
+
"Other": 361
|
| 130 |
+
},
|
| 131 |
+
"mean_l2_max_prob": 0.9146425780270135,
|
| 132 |
+
"predict_seconds": 5.1
|
| 133 |
+
},
|
| 134 |
+
"n_donors": 22,
|
| 135 |
+
"n_generated_cells": 33000,
|
| 136 |
+
"composition": {
|
| 137 |
+
"l1_mean": 0.12619402003264532,
|
| 138 |
+
"l1_median": 0.11659412607107093,
|
| 139 |
+
"l1_obs_loo_null_mean": 0.16302776481179745,
|
| 140 |
+
"l1_generated_loo_mean_vs_observed_mean": 0.16943601217772636,
|
| 141 |
+
"composition_top1": 0.13636363636363635,
|
| 142 |
+
"mean_fraction_generated": {
|
| 143 |
+
"T cell": 0.65397,
|
| 144 |
+
"B cell": 0.078394,
|
| 145 |
+
"Monocyte": 0.155636,
|
| 146 |
+
"NK cell": 0.065182,
|
| 147 |
+
"DC": 0.035879,
|
| 148 |
+
"Other": 0.010939
|
| 149 |
+
},
|
| 150 |
+
"mean_fraction_observed": {
|
| 151 |
+
"T cell": 0.637846,
|
| 152 |
+
"B cell": 0.065772,
|
| 153 |
+
"Monocyte": 0.185032,
|
| 154 |
+
"NK cell": 0.081281,
|
| 155 |
+
"DC": 0.023594,
|
| 156 |
+
"Other": 0.006476
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"pseudobulk": {
|
| 160 |
+
"n_genes": 5508,
|
| 161 |
+
"r_median": 0.9071654487371384,
|
| 162 |
+
"r_mean": 0.908022109905983,
|
| 163 |
+
"top1": 0.22727272727272727,
|
| 164 |
+
"n_top1": 5,
|
| 165 |
+
"own_rank_median": 3.5,
|
| 166 |
+
"chance_top1": 0.045454545454545456
|
| 167 |
+
},
|
| 168 |
+
"precision_coverage": {
|
| 169 |
+
"precision": 0.9945454545454545,
|
| 170 |
+
"coverage": 0.9287878787878788,
|
| 171 |
+
"density": 2.992848484848485,
|
| 172 |
+
"n_query": 3300,
|
| 173 |
+
"n_reference": 3300
|
| 174 |
+
},
|
| 175 |
+
"precision_coverage_depth_matched": {
|
| 176 |
+
"precision": 0.9960606060606061,
|
| 177 |
+
"coverage": 0.9918181818181818,
|
| 178 |
+
"density": 3.9872727272727273,
|
| 179 |
+
"detected_median_before": {
|
| 180 |
+
"R1": 365.0,
|
| 181 |
+
"Q": 290.0
|
| 182 |
+
},
|
| 183 |
+
"detected_median_after": {
|
| 184 |
+
"R1": 290.0,
|
| 185 |
+
"Q": 290.0
|
| 186 |
+
}
|
| 187 |
+
},
|
| 188 |
+
"monocyte_pct": {
|
| 189 |
+
"generated_mean_over_donors": 15.56363636363636,
|
| 190 |
+
"observed_mean_over_donors": 18.503211518737277,
|
| 191 |
+
"generated_pooled_cells": 15.563636363636363
|
| 192 |
+
},
|
| 193 |
+
"median_umi_per_cell_scoring_genes": {
|
| 194 |
+
"generated_pooled": 2768.0,
|
| 195 |
+
"observed_pooled": 1976.0,
|
| 196 |
+
"generated_mean_of_donor_medians": 2763.25,
|
| 197 |
+
"observed_mean_of_donor_medians": 2003.1363636363637
|
| 198 |
+
},
|
| 199 |
+
"seconds": 10.3
|
| 200 |
+
}
|
| 201 |
+
},
|
| 202 |
+
"code_sha256": {
|
| 203 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 204 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 205 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
|
| 206 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
|
| 207 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
|
| 208 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
|
| 209 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
|
| 210 |
+
},
|
| 211 |
+
"seconds": 13.0
|
| 212 |
+
}
|