junidude14 commited on
Commit
b0752f1
·
verified ·
1 Parent(s): 8fc3b00

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n10/lora/scoring_support.json ADDED
@@ -0,0 +1,69 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-score-binding.v1",
3
+ "support_sha256": "b76459a585604c60e588279b889094c972e621e2aa6c28ecf5aa163ffe5481bf",
4
+ "cohort": "immicro",
5
+ "unit": "fold0_n10",
6
+ "test_sample_ids": [
7
+ "HS3",
8
+ "HS6",
9
+ "HS7",
10
+ "HS13",
11
+ "HS18",
12
+ "HS31",
13
+ "HS34",
14
+ "HS37",
15
+ "HS38",
16
+ "HS52",
17
+ "HS58",
18
+ "HS60",
19
+ "HS66",
20
+ "HS81",
21
+ "HS82",
22
+ "HS83",
23
+ "HS85",
24
+ "HS86",
25
+ "HS95",
26
+ "HS98",
27
+ "HS101",
28
+ "HS107"
29
+ ],
30
+ "test_donor_ids": [
31
+ "HS3",
32
+ "HS6",
33
+ "HS7",
34
+ "HS13",
35
+ "HS18",
36
+ "HS31",
37
+ "HS34",
38
+ "HS37",
39
+ "HS38",
40
+ "HS52",
41
+ "HS58",
42
+ "HS60",
43
+ "HS66",
44
+ "HS81",
45
+ "HS82",
46
+ "HS83",
47
+ "HS85",
48
+ "HS86",
49
+ "HS95",
50
+ "HS98",
51
+ "HS101",
52
+ "HS107"
53
+ ],
54
+ "arm_bindings": {
55
+ "lora": {
56
+ "arm": "lora",
57
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n10/lora.npz",
58
+ "npz_sha256": "1923f1ca34526e6e32c7f60a25a5845680688c9b6a511d00c874085e0de4455f",
59
+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n10/lora.log",
60
+ "receipt_sha256": "85c114a555d2552f62a792b24c322146986ffb92dd61baa5c0ef7e52ab0bdce0",
61
+ "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n10/lora/RUN.json",
62
+ "source_binding_sha256": "5b8128b3f19382cc87601a099e0054f48c3ed6ceb2aed9e7862b97c47485ff7d",
63
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n10/test_raw.npz",
64
+ "condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
65
+ "checkpoint_sha256": "0ce14180d6beca8c9c4d0e994525c5e297af44de2c6e8f33f0a643f8634a4bac",
66
+ "support_sha256": "b76459a585604c60e588279b889094c972e621e2aa6c28ecf5aa163ffe5481bf"
67
+ }
68
+ }
69
+ }
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/receipts/score.json ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "state": "completed",
3
+ "stage": "score",
4
+ "at": "2026-10-15T12:00:14.970964+00:00",
5
+ "outputs": [
6
+ {
7
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/generated_cells.parquet",
8
+ "sha256": "9144f21d1e2f1f5bbe4ef8a9eb9133a13ea517fa42e1354f5ef2a0fff5b912e2",
9
+ "bytes": 291391
10
+ },
11
+ {
12
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/labels/labels.manifest.json",
13
+ "sha256": "cd379ab38a3287f0ecb06989d0ee682f0569cab6c361896e7b4f75999e4d1b6b",
14
+ "bytes": 5114
15
+ },
16
+ {
17
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/arms/lora/labels/labels.parquet",
18
+ "sha256": "c7a5319becc87d7457990299c14a6f527ec858620e7de9a21a46ac6a134427e6",
19
+ "bytes": 820914
20
+ },
21
+ {
22
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/per_donor.csv",
23
+ "sha256": "af21647a0c714de2763c7158c5282d54083f5cf90092673116ee2d3c7f92fe83",
24
+ "bytes": 9188
25
+ },
26
+ {
27
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/summary.json",
28
+ "sha256": "9369c8938cd5ab6c32230699419ad17d71eb13bc25770a47d150b1dc4e619eed",
29
+ "bytes": 7553
30
+ },
31
+ {
32
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/scoring_support.json",
33
+ "sha256": "f6da235cd02b1ef841ccf7864fdde2a23aed76ce2945911a5561fc4019de315b",
34
+ "bytes": 2096
35
+ }
36
+ ],
37
+ "support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252",
38
+ "binding": {
39
+ "arm": "lora",
40
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
41
+ "npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
42
+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.log",
43
+ "receipt_sha256": "c9b3649a588c9227f77d5d53a1ba0724ae5247cb086e76d63f1c5291535fc67f",
44
+ "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/RUN.json",
45
+ "source_binding_sha256": "3e4b3dcd38fefcc2828203c86d0a4476eb9928e1a20e6e2bb9375719ef578e84",
46
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
47
+ "condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
48
+ "checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
49
+ "support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252"
50
+ },
51
+ "reuse": {}
52
+ }
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/per_donor.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
2
+ lora,HS3,DB3,1500,4617,150,0.6946666666666667,0.6484730344379467,0.06733333333333333,0.06952566601689408,0.11733333333333333,0.17782109594975093,0.06,0.07060862031622266,0.048,0.028589993502274202,0.012666666666666666,0.004981589776911414,0.14657743123240205,0.04060118700472884,0.9061830541150611,3,False,0.9866666666666667,0.98,1.0,1.0,11.733333333333333,17.782109594975093,2806.5,2186.0
3
+ lora,HS6,DB3,1500,4222,150,0.5486666666666666,0.4836570345807674,0.058666666666666666,0.037423022264329704,0.256,0.3147797252486973,0.068,0.13003315963998105,0.05733333333333333,0.024869729985788725,0.011333333333333334,0.009237328280435813,0.24162576977735664,0.3824588765473767,0.910720963489262,3,False,1.0,0.9066666666666666,1.0,0.9866666666666667,25.6,31.47797252486973,2671.0,2457.5
4
+ lora,HS7,DB1,1500,4271,150,0.6966666666666667,0.7035822992273473,0.06133333333333333,0.03839850152189183,0.12133333333333333,0.13135097166939827,0.068,0.09740107703114025,0.042,0.02130648560056193,0.010666666666666666,0.0079606649496605,0.09266869585577153,0.17462025766050882,0.9053878584275726,2,False,0.9933333333333333,1.0,0.9933333333333333,1.0,12.133333333333333,13.135097166939827,2710.5,1748.0
5
+ lora,HS13,DB5,1500,4792,150,0.6066666666666667,0.6156093489148581,0.082,0.056343906510851416,0.21066666666666667,0.2166110183639399,0.056666666666666664,0.08764607679465776,0.034,0.02003338898163606,0.01,0.0037562604340567614,0.09173288814691147,0.07950263318013584,0.9141505429312837,4,False,0.9933333333333333,0.88,0.9933333333333333,0.9933333333333333,21.066666666666666,21.66110183639399,2969.5,2176.0
6
+ lora,HS18,DB4,1500,3348,150,0.74,0.6633811230585425,0.06,0.05734767025089606,0.122,0.18309438470728792,0.03666666666666667,0.07198327359617682,0.028,0.016129032258064516,0.013333333333333334,0.008064516129032258,0.19282198327359612,0.056830454472214534,0.9035683268884944,10,False,1.0,0.94,0.9933333333333333,0.9933333333333333,12.2,18.309438470728793,3064.0,2108.0
7
+ lora,HS31,DB3,1500,4830,150,0.6433333333333333,0.5956521739130435,0.07933333333333334,0.07039337474120083,0.13466666666666666,0.21884057971014492,0.088,0.08385093167701864,0.042666666666666665,0.02546583850931677,0.012,0.005797101449275362,0.1683478260869565,0.08982859354260735,0.9119754697226327,1,True,0.9866666666666667,0.96,0.9933333333333333,1.0,13.466666666666665,21.884057971014492,2755.5,2217.5
8
+ lora,HS34,DB5,1500,4363,150,0.694,0.7073114829245931,0.07866666666666666,0.04859041943616777,0.14733333333333334,0.16983726793490717,0.04666666666666667,0.0550080220032088,0.024666666666666667,0.013981205592482237,0.008666666666666666,0.005271602108640843,0.08831354572541826,0.14554772243505307,0.9119950399352901,8,False,0.9866666666666667,0.8133333333333334,0.9933333333333333,0.9866666666666667,14.733333333333334,16.983726793490717,2985.5,2176.0
9
+ lora,HS37,DB6,1500,2127,150,0.5546666666666666,0.5763986835919135,0.132,0.14997649271274094,0.18333333333333332,0.18288669487541137,0.066,0.06535025858015985,0.048,0.021626704278326282,0.016,0.0037611659614480487,0.07941701927597557,0.17642904039178112,0.9123254024697023,10,False,0.9933333333333333,0.9066666666666666,1.0,0.9866666666666667,18.333333333333332,18.28866948754114,2873.0,2099.0
10
+ lora,HS38,DB2,1500,3952,150,0.5853333333333334,0.4534412955465587,0.06066666666666667,0.06022267206477733,0.216,0.27631578947368424,0.08533333333333333,0.16776315789473684,0.046,0.03365384615384615,0.006666666666666667,0.00860323886639676,0.2893643724696357,0.3979973492276381,0.9144851596768439,3,False,0.9933333333333333,0.9866666666666667,1.0,1.0,21.6,27.631578947368425,2601.5,1448.0
11
+ lora,HS52,DB1,1500,4286,150,0.6793333333333333,0.7473168455436304,0.07666666666666666,0.04316378908072795,0.12733333333333333,0.12085860942603827,0.074,0.06276248250116659,0.03266666666666666,0.017498833411105925,0.01,0.008399440037330844,0.13596702442059416,0.23339752310597672,0.9056660105882113,3,False,0.9933333333333333,0.9733333333333334,1.0,0.9866666666666667,12.733333333333333,12.085860942603826,2570.0,1848.5
12
+ lora,HS58,DB7,1500,1299,150,0.6813333333333333,0.6605080831408776,0.03866666666666667,0.029253271747498075,0.14666666666666667,0.15550423402617397,0.09333333333333334,0.1170130869899923,0.029333333333333333,0.03156274056966898,0.010666666666666666,0.006158583525789068,0.06949345650500384,0.13904887966629118,0.9011835139121794,11,False,1.0,0.9066666666666666,1.0,1.0,14.666666666666666,15.550423402617398,2144.5,1944.0
13
+ lora,HS60,DB6,1500,2659,150,0.654,0.6288078224896577,0.056,0.04061677322301617,0.14666666666666667,0.16058668672433246,0.108,0.14328694998119593,0.03133333333333333,0.020308386611508085,0.004,0.006393380970289583,0.10320070201830268,0.12991818939150382,0.907554076616269,16,False,1.0,0.92,1.0,0.9933333333333333,14.666666666666666,16.058668672433246,2645.5,2014.0
14
+ lora,HS66,DB4,1500,4857,150,0.6466666666666666,0.6448424953675108,0.108,0.10376775787523163,0.132,0.16512250360304714,0.06066666666666667,0.07020794729256744,0.04,0.012559192917438749,0.012666666666666666,0.0035001029442042414,0.08532756845789576,0.09427105876197542,0.903756030741563,16,False,1.0,0.8733333333333333,1.0,0.98,13.200000000000001,16.512250360304716,2819.0,2041.0
15
+ lora,HS81,DB7,1500,1638,150,0.7233333333333334,0.721001221001221,0.07533333333333334,0.04212454212454213,0.11666666666666667,0.13553113553113552,0.04733333333333333,0.06288156288156288,0.02666666666666667,0.03296703296703297,0.010666666666666666,0.005494505494505495,0.08142612942612948,0.19387054279631524,0.9021766945746922,10,False,0.9933333333333333,0.86,1.0,0.98,11.666666666666666,13.553113553113553,3037.5,2240.5
16
+ lora,HS82,DB2,1500,4201,150,0.718,0.6553201618662223,0.11933333333333333,0.1309212092358962,0.08733333333333333,0.14782194715543917,0.046,0.031183051654368008,0.024,0.02499404903594382,0.005333333333333333,0.009759581052130446,0.15499357295881927,0.18293033059828231,0.9067768208580079,1,True,1.0,1.0,0.9933333333333333,1.0,8.733333333333333,14.782194715543916,3043.0,1587.0
17
+ lora,HS83,DB6,1500,2410,150,0.65,0.7128630705394191,0.08466666666666667,0.08049792531120332,0.18066666666666667,0.14481327800829877,0.04533333333333334,0.045228215767634854,0.026,0.012448132780082987,0.013333333333333334,0.004149377593360996,0.12572614107883817,0.1880345194642001,0.9131498968674202,3,False,1.0,0.9333333333333333,0.9933333333333333,0.9933333333333333,18.066666666666666,14.481327800829877,2918.0,2373.0
18
+ lora,HS85,DB5,1500,4216,150,0.628,0.5785104364326376,0.08266666666666667,0.07756166982922201,0.19466666666666665,0.22936432637571158,0.058666666666666666,0.0896584440227704,0.028666666666666667,0.021347248576850095,0.007333333333333333,0.003557874762808349,0.13137887413029734,0.13514298327096805,0.9112570930351678,13,False,1.0,0.78,1.0,0.9666666666666667,19.466666666666665,22.93643263757116,2924.0,2171.5
19
+ lora,HS86,DB7,1500,1111,150,0.646,0.6561656165616562,0.07133333333333333,0.0711071107110711,0.16266666666666665,0.162016201620162,0.07733333333333334,0.0711071107110711,0.03133333333333333,0.034203420342034205,0.011333333333333334,0.0054005400540054005,0.02607140714071407,0.07179394704932163,0.9007588572099332,18,False,1.0,0.9133333333333333,1.0,1.0,16.266666666666666,16.2016201620162,2454.0,1989.0
20
+ lora,HS95,DB1,1500,4264,150,0.6253333333333333,0.6458724202626641,0.13333333333333333,0.08348968105065666,0.13333333333333333,0.13860225140712945,0.052,0.09826454033771106,0.03866666666666667,0.025093808630393996,0.017333333333333333,0.008677298311444653,0.14414509068167605,0.09728161934908136,0.9076790758673545,1,True,0.9933333333333333,1.0,0.9866666666666667,1.0,13.333333333333334,13.860225140712945,2787.0,1829.5
21
+ lora,HS98,DB2,1500,4959,150,0.5593333333333333,0.5366001209921355,0.06933333333333333,0.07360354910264166,0.24666666666666667,0.30490018148820325,0.06333333333333334,0.03891913692276669,0.044,0.03367614438394838,0.017333333333333333,0.012300867110304496,0.12500746118168987,0.3008904548210157,0.9185269532808491,1,True,0.9933333333333333,0.98,1.0,0.98,24.666666666666668,30.490018148820326,2804.0,1606.0
22
+ lora,HS101,DB4,1500,6549,150,0.6793333333333333,0.6659031913269201,0.06733333333333333,0.051152847763017255,0.138,0.192090395480226,0.072,0.05939838143227974,0.034666666666666665,0.026721636891128418,0.008666666666666666,0.004733547106428463,0.108180790960452,0.08013023802852969,0.9064263276905762,11,False,1.0,0.92,0.9933333333333333,0.9933333333333333,13.8,19.2090395480226,2331.5,1960.0
23
+ lora,HS107,DB1,1500,4445,150,0.7326666666666667,0.7313835770528684,0.062,0.031496062992125984,0.10266666666666667,0.14195725534308212,0.06066666666666667,0.0686164229471316,0.03133333333333333,0.02002249718785152,0.010666666666666666,0.006524184476940383,0.09448068991376081,0.19608442509403828,0.9007832490332567,1,True,0.9733333333333334,1.0,0.98,1.0,10.266666666666667,14.195725534308213,2876.5,1849.0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score/summary.json ADDED
@@ -0,0 +1,212 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "paired_ft_scores.v1",
3
+ "dataset": "immicro",
4
+ "written_utc": "2026-10-15T12:00:14.966876+00:00",
5
+ "command": [
6
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
7
+ "--dataset",
8
+ "immicro",
9
+ "--out",
10
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score",
11
+ "--donors",
12
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/test_sample_ids.txt",
13
+ "--threads",
14
+ "2",
15
+ "--arm",
16
+ "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
17
+ "--no-contrast",
18
+ "--no-deg"
19
+ ],
20
+ "arms": [
21
+ "lora"
22
+ ],
23
+ "donors": [
24
+ "HS3",
25
+ "HS6",
26
+ "HS7",
27
+ "HS13",
28
+ "HS18",
29
+ "HS31",
30
+ "HS34",
31
+ "HS37",
32
+ "HS38",
33
+ "HS52",
34
+ "HS58",
35
+ "HS60",
36
+ "HS66",
37
+ "HS81",
38
+ "HS82",
39
+ "HS83",
40
+ "HS85",
41
+ "HS86",
42
+ "HS95",
43
+ "HS98",
44
+ "HS101",
45
+ "HS107"
46
+ ],
47
+ "n_donors": 22,
48
+ "reference": {
49
+ "cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
50
+ "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
51
+ "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
52
+ "n_r1_cells": 3300,
53
+ "pca": {
54
+ "n_components": 50,
55
+ "explained_variance_ratio_sum": 0.305976539850235,
56
+ "n_fit_cells": 3300
57
+ },
58
+ "r2_control": {
59
+ "precision": 0.9957575757575757,
60
+ "coverage": 1.0,
61
+ "density": 2.6083333333333334,
62
+ "n_query": 3300,
63
+ "depth_matched": {
64
+ "precision": 0.9936363636363637,
65
+ "coverage": 1.0,
66
+ "density": 2.558878787878788
67
+ }
68
+ },
69
+ "observed_l1_loo_null_mean": 0.16302776481179745
70
+ },
71
+ "contrast_definition": {
72
+ "enabled": false,
73
+ "reason": "--no-contrast"
74
+ },
75
+ "deg_definition": {
76
+ "enabled": false,
77
+ "reason": "--no-deg"
78
+ },
79
+ "headline": {
80
+ "lora": {
81
+ "comp_l1": 0.12619402003264532,
82
+ "comp_l1_obs_loo_null": 0.16302776481179745,
83
+ "precision": 0.9945454545454545,
84
+ "coverage": 0.9287878787878788,
85
+ "precision_dm": 0.9960606060606061,
86
+ "coverage_dm": 0.9918181818181818,
87
+ "pb_r_median": 0.9071654487371384,
88
+ "pb_top1": 0.22727272727272727,
89
+ "mono_pct_gen": 15.56363636363636,
90
+ "mono_pct_obs": 18.503211518737277,
91
+ "median_umi_gen": 2768.0,
92
+ "median_umi_obs": 1976.0,
93
+ "seconds": 10.3
94
+ }
95
+ },
96
+ "per_arm": {
97
+ "lora": {
98
+ "arm": "lora",
99
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
100
+ "npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
101
+ "receipt_verified": true,
102
+ "generation": {
103
+ "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/checkpoint_ft.pt",
104
+ "checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
105
+ "input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
106
+ "input_condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
107
+ "seed": 20260928,
108
+ "steps": 50,
109
+ "support_readout": "bernoulli",
110
+ "weights": "ema"
111
+ },
112
+ "condition_for_broadcast": null,
113
+ "poisson": {
114
+ "seed": 20260916,
115
+ "rule": "whole NPZ, rows in NPZ order",
116
+ "nnz_whole_npz": 9910366,
117
+ "median_library_whole_npz_panel": 2769.0,
118
+ "n_rows_whole_npz": 33000
119
+ },
120
+ "annotation": {
121
+ "model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
122
+ "zero_padded_model_genes": 1,
123
+ "label_counts": {
124
+ "T cell": 21581,
125
+ "Monocyte": 5136,
126
+ "B cell": 2587,
127
+ "NK cell": 2151,
128
+ "DC": 1184,
129
+ "Other": 361
130
+ },
131
+ "mean_l2_max_prob": 0.9146425780270135,
132
+ "predict_seconds": 5.1
133
+ },
134
+ "n_donors": 22,
135
+ "n_generated_cells": 33000,
136
+ "composition": {
137
+ "l1_mean": 0.12619402003264532,
138
+ "l1_median": 0.11659412607107093,
139
+ "l1_obs_loo_null_mean": 0.16302776481179745,
140
+ "l1_generated_loo_mean_vs_observed_mean": 0.16943601217772636,
141
+ "composition_top1": 0.13636363636363635,
142
+ "mean_fraction_generated": {
143
+ "T cell": 0.65397,
144
+ "B cell": 0.078394,
145
+ "Monocyte": 0.155636,
146
+ "NK cell": 0.065182,
147
+ "DC": 0.035879,
148
+ "Other": 0.010939
149
+ },
150
+ "mean_fraction_observed": {
151
+ "T cell": 0.637846,
152
+ "B cell": 0.065772,
153
+ "Monocyte": 0.185032,
154
+ "NK cell": 0.081281,
155
+ "DC": 0.023594,
156
+ "Other": 0.006476
157
+ }
158
+ },
159
+ "pseudobulk": {
160
+ "n_genes": 5508,
161
+ "r_median": 0.9071654487371384,
162
+ "r_mean": 0.908022109905983,
163
+ "top1": 0.22727272727272727,
164
+ "n_top1": 5,
165
+ "own_rank_median": 3.5,
166
+ "chance_top1": 0.045454545454545456
167
+ },
168
+ "precision_coverage": {
169
+ "precision": 0.9945454545454545,
170
+ "coverage": 0.9287878787878788,
171
+ "density": 2.992848484848485,
172
+ "n_query": 3300,
173
+ "n_reference": 3300
174
+ },
175
+ "precision_coverage_depth_matched": {
176
+ "precision": 0.9960606060606061,
177
+ "coverage": 0.9918181818181818,
178
+ "density": 3.9872727272727273,
179
+ "detected_median_before": {
180
+ "R1": 365.0,
181
+ "Q": 290.0
182
+ },
183
+ "detected_median_after": {
184
+ "R1": 290.0,
185
+ "Q": 290.0
186
+ }
187
+ },
188
+ "monocyte_pct": {
189
+ "generated_mean_over_donors": 15.56363636363636,
190
+ "observed_mean_over_donors": 18.503211518737277,
191
+ "generated_pooled_cells": 15.563636363636363
192
+ },
193
+ "median_umi_per_cell_scoring_genes": {
194
+ "generated_pooled": 2768.0,
195
+ "observed_pooled": 1976.0,
196
+ "generated_mean_of_donor_medians": 2763.25,
197
+ "observed_mean_of_donor_medians": 2003.1363636363637
198
+ },
199
+ "seconds": 10.3
200
+ }
201
+ },
202
+ "code_sha256": {
203
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
204
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
205
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
206
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
207
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
208
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
209
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
210
+ },
211
+ "seconds": 13.0
212
+ }