Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_full/per_donor.csv

@@ -0,0 +1,83 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+Abd-PS04,ped_sepsis,0.6191581285547342,0.5435906468829437,0.6857746973769197,0.563603477393826,0.3770081360494281,0.3387676721587627,0.015308716452509388,0.14094329234721967,0.0058400249068765704,0.08532769530134078,0.17030647825289044,0.6211194460389485,0.6598861037838374,0.5608368507983116,0.0008350056609508127,0.20844262156568122,0.02147182969352175,0.017542266539411138,0.027412937569801142,0.003853918150119288,0.01589558469505016,0.003621925326830118,0.10258763075793724
+Abd-PS05,ped_sepsis,0.5314740651601516,0.5512459201424367,0.5647869447116035,0.5852522509823966,0.2455944540727902,0.47446646436111223,0.04721815201739467,0.30387059503177355,0.2981038908057707,0.5461111999633562,0.5060658578856152,0.13770044079201774,0.16630885596853862,0.07019064124783363,0.021449347852069294,0.21868381662507289,0.0891103408434431,0.018331643712628878,1.3358959219395552e-05,0.008954361640670132,0.04994821247640108,0.021664616466418124,0.021808203350664357
+Abd-PS07,ped_sepsis,1.1061890239548158,0.3162291122316178,1.1781107911481856,0.4078522104579877,0.2294900153609831,0.7300708080963866,0.3276652592975451,0.8626152073732719,0.013958460647134352,0.09140808800554819,0.023329493087557603,0.05295504930773875,0.05305961097704633,0.002304147465437788,0.19881572838908154,0.5191442210754473,0.09331797235023041,0.0022539166678365325,0.00872222325577149,0.0002880184331797235,0.0019460368918222722,5.973886415100652e-07,0.018145161290322582
+Abd-PS19,ped_sepsis,0.49120504726952613,0.4697858934067183,0.591121806511156,0.33590892179970533,0.3432024048096192,0.6971925459017561,0.28210893775424295,0.4622995991983968,0.023336485040596065,0.12904756830678654,0.11209919839679358,0.22461931023751486,0.2729821885820293,0.2937124248496994,0.03059246850486245,0.28451587717166393,0.05586172344689379,0.007166370991715012,0.0010128136143204367,0.0156563126252505,0.017092819323555806,0.030332614570956904,0.06037074148296593
+Abd-PS20,ped_sepsis,0.29666552231926624,0.6928406348875926,0.22917464001616222,0.630375068105027,0.3857322719370483,0.6513887500542821,0.4479973427065392,0.30496843261048584,0.34531521559390266,0.5335591719849999,0.5780949766675817,0.0020629666511879333,0.005311908835149214,0.08770244304144935,4.473483319691641e-06,0.013127073682300545,0.007823222618720834,2.9314039264767005e-06,7.021011442414004e-07,0.0005489980785067252,0.0012256628133810582,3.8006898668298896e-06,0.02086192698325556
+Abd-PS23,ped_sepsis,0.3638638871433516,0.7942326500355665,0.20756526061172842,0.6211643535315309,0.608717567881179,0.6190135721595451,0.24644674556237142,0.2529589231840334,0.11333577801376116,0.2833440950542025,0.3272220932931075,0.15163518158709208,0.19196600318961823,0.32142028312833604,1.529138507667872e-05,0.10188269854660616,0.013460199582269667,0.008018892896390553,1.1638869266373038e-06,0.002088651659317707,0.10798128395813439,0.17635929376027493,0.08284984915293572
+Abd-PS27,ped_sepsis,0.3022141363481037,0.48586613675408635,0.2851803500418312,0.4150779231798277,0.6182166118595522,0.8555351687271016,0.7637091685241102,0.6126021003500584,0.0037777519739790387,0.05636910236038142,0.06078285774901877,0.08058635150717834,0.10466271231798621,0.13196138750397793,3.4137598608755304e-06,0.0027123645304841398,0.010289593720165482,0.0006240850426369305,0.00025226096566795524,0.0029701920016972526,0.059473228989243364,0.07229439130137005,0.1813938686750822
+Abd-S102,adult_sepsis,1.5192346576011269,1.0400613317368181,1.5661685019341731,1.243863720862516,0.3606717129240259,0.39037151545663223,0.056577459104927674,0.47981497056349875,0.02700044827762448,0.05754245250156053,0.39318755256518084,0.46032525016429987,0.551296729239042,0.0053616484440706475,0.03147878334939467,0.20130057253755468,0.095878889823381,0.002088096601420773,1.1952531670310485e-06,0.0007359125315391085,0.0887359061506278,0.1332815913637481,0.02502102607232969
+Abd-S103,adult_sepsis,0.9341679855505807,0.4758608980672863,1.0749290878251299,0.5378044001766862,0.5684134564363792,0.5824599107215271,0.16099513780028224,0.4813753581661891,0.1583169273888957,0.3237929691075486,0.14782977820227103,0.12106939488848802,0.1465285023238568,0.0024408362517245037,0.01423152053927816,0.1909681883289215,0.04393505253104107,0.007942435285501639,5.382230516658893e-07,0.00021224663058473945,0.11597981117630923,0.1777146642163391,0.3242067282181895
+Abd-S120,adult_sepsis,0.5799717841361238,0.38722332206502486,0.6720354987508169,0.3685077341719276,0.1132934463081446,0.507635524079374,0.12352277027510818,0.3140238630468615,0.007095734050149017,0.049052305588935106,0.11049628220646723,0.44421071332565887,0.46908952505872753,0.46446481065191075,0.03522779429046423,0.3583336832811656,0.07297250561992046,2.432466627339221e-06,1.0951259540661387e-06,0.0008646031471554556,0.005827801787726673,6.206701094690909e-07,0.03717793532768459
+Abd-S123,adult_sepsis,0.42859759137567927,0.501076887018575,0.4787321132726941,0.3952177552474804,0.40709255437371,0.4204066765621531,0.05057689825077362,0.16986823305286552,0.01033620754256132,0.0579154737083148,0.08779171297031275,0.38984727546423786,0.4515890868912777,0.5027782187648833,0.08135915186958131,0.3236812373452455,0.10938244165740593,0.00014512877306761083,1.396784777892812e-06,0.0007937767899666614,0.09790555978839892,0.1162359070196103,0.1293856167645658
+Abd-S156,adult_sepsis,0.9016674325893219,0.490488138574358,0.717863027305966,0.40525761243179387,0.5273359984770607,0.3343047678959408,0.045655028188245086,0.3343803540833809,0.001899963091975971,0.01801856954568984,0.08209594517418618,0.3033024940117743,0.2973139611466675,0.39406053683609366,0.018159348720995255,0.1398563538106527,0.0910908052541405,1.978351358011064e-06,5.409298194105277e-07,0.0012849800114220445,0.3423314479279558,0.4991555463789254,0.0970873786407767
+Abd-S39,adult_sepsis,0.8467567618865506,0.8729921225686504,0.49902284759263726,0.5197362181590258,0.8112340557756543,0.30502901896571044,0.04364155842727624,0.13819622465625728,0.0033659312357441963,0.029945369626341943,0.06152412025168958,0.3314344299475626,0.3974643536342369,0.6933115823817292,0.03457382472257218,0.19174517183995055,0.049638778839431366,2.5097429115930283e-06,5.401188113929704e-07,0.0013982754602656724,0.32559428538549895,0.33720300635338296,0.05593101841062689
+Abd-S42,adult_sepsis,0.6383852659938224,0.2899619880424657,0.7839497669158727,0.3613796768610475,0.1889142683112532,0.6384166951012932,0.34273921316177874,0.5748439165524593,0.03299442827272755,0.08355026986115213,0.09760925841327851,0.1786109108469017,0.20524300446426513,0.17039744175422566,0.13045574443818603,0.3429735359485132,0.05862646566164154,0.0030405094792254287,0.0014852122201678124,0.0016750418760469012,0.016481711861666345,0.024008764344122784,0.0968478757423481
+Abd-S47,adult_sepsis,0.134967350622901,0.17643668539471086,0.11095652423376302,0.14271856056052368,0.1654567808305106,0.7028666445988426,0.7593093602897062,0.7027976414502571,0.1329473879808758,0.19156473543675598,0.20474219044034625,0.02891133294605322,0.043213833275413845,0.03224187680341237,0.006602039019481293,0.002439815697862378,0.019069125580228326,1.3640479919055463e-06,9.128429458512414e-07,0.0006272738677706687,0.12867123140675515,0.0034713424573157682,0.040521891857985194
+Abd-S51,adult_sepsis,0.330805282035486,0.33608344882118446,0.48921001130830233,0.341442637892903,0.3662083029861617,0.4207729698585164,0.19508728019771446,0.25273124544792425,0.1939582690303375,0.22515366370434378,0.269482884195193,0.33502668780779987,0.4017564603245882,0.3551347414420976,0.035503445092333503,0.15548886095535436,0.03670793882010197,0.0001057586071813,0.0003083511778485439,0.0014566642388929353,0.014632869603831323,0.022205383640150633,0.08448652585579024
+Abd-S54,adult_sepsis,0.6309726556401329,0.4425543757235348,0.71533086039407,0.5261833826652893,0.5083407521105142,0.5510397336931344,0.17114881717355232,0.4854182655410591,0.06543811465360568,0.13526303868507136,0.1364799181376311,0.16243306444450772,0.17939234041801005,0.012918905090816066,0.19390425428951505,0.47689464268761717,0.340752110514198,0.007292749918548305,0.006749995579282778,0.0011511895625479663,0.0198920830006887,0.030551165456466158,0.023279611153747763
+Abd-S57,adult_sepsis,1.1640081491678125,0.6190299968157549,1.3117564679878058,0.8628310924983316,0.7179777482331537,0.5731896665583154,0.28340067868922797,0.8422783570079071,3.3514683709594442e-06,2.9962083141881905e-06,0.009026660135749773,0.31328216394121444,0.3570782282610974,0.016164019312854244,0.0765620725048109,0.32957274898139716,0.10671051710866979,4.979285382117054e-06,0.019487167735365952,0.0012595339724302008,0.036957766241906234,0.010458180124597384,0.024560912462388916
+Abd-S66,adult_sepsis,1.013172133907582,0.649307982838451,1.133218473378181,0.9333078320935733,0.2429119892608439,0.4733739331535059,0.12171085827688434,0.49295242889504154,0.07768242664329497,0.13622381383729176,0.23873647118046817,0.3625346861083773,0.4342154461957742,0.03788069468915178,0.07829394352307678,0.29713779921258515,0.18688648376541656,5.816874190363329e-06,1.497875722019882e-06,0.0003775484520513466,0.00810919369755469,0.010710584601742444,0.04316637301787063
+Abd-S79,adult_sepsis,0.7441954943769505,0.47287822235047056,0.9200336472656372,0.7138593815473553,0.6268529753025028,0.5344125583700609,0.26701411509082207,0.5500994530084535,0.13485347199576125,0.24268902855995825,0.30892590750870214,0.2570429669960652,0.3023846403269033,0.024365987071108902,0.057959854536149664,0.18781355440011,0.09373446046742914,0.0038864475108458694,9.785701679830562e-05,0.00012431626056688214,0.011844700591117203,8.046054080374277e-07,0.022749875683739432
+Abd-S83,adult_sepsis,1.2587156249148488,0.9736218185031056,1.387099514779765,1.220036803516918,0.5345560745154883,0.34472425633485626,0.00012948159591722895,0.3924947656627476,1.503547736097083e-05,0.007837266724325682,0.16991464003865356,0.5257934968248608,0.6244208275960313,0.049927524561120956,0.033150320645191154,0.22738267840639603,0.3013367692059913,1.1992383485330723e-05,5.274908383144001e-06,0.0009663391850539539,0.09630489833424569,0.14022447076894654,0.0853599613464326
+Abd-S98,adult_sepsis,1.6399728209430668,0.8971745614966364,1.6633825222049448,1.1753033024819388,0.3852375249500998,0.44124167084890814,0.03480555087934809,0.7477045908183633,5.175020206882912e-06,0.00404749084050612,0.10958083832335329,0.4429247067297147,0.5123557695158136,0.019560878243512974,0.07941254981341003,0.39345671576936264,0.11037924151696607,1.4800615064978135e-05,4.2783337554455335e-05,0.0015968063872255488,0.036401096972695425,0.05529168965741513,0.011177644710578843
+HC01,adult_HC,0.4861804095690334,0.24377039102891848,0.6577411011728744,0.19942523866565262,0.1363990956453357,0.7120749133951237,0.3921216918462751,0.5901897178806645,0.04391680823612849,0.08114424873486302,0.09938071365378945,0.17550584798849336,0.19627224355049816,0.1862774009633343,0.057510478126163334,0.2966081339448861,0.06772830040302762,0.010984693217208774,0.032624061045153335,0.028408532389658903,7.259036882246009e-06,0.001229620878324429,0.028015334709525212
+HC05,adult_HC,0.7652955101350163,0.15122231216645643,0.8489841460089781,0.24228183623748212,0.0757682468021068,0.7033969338272176,0.33740167935560433,0.6924604966139954,0.04424115872646344,0.08491434815595544,0.09498871331828443,0.08725243471925097,0.07882819873939446,0.08099322799097065,0.16297533155481836,0.4841226194780454,0.10455981941309254,0.002129747242014755,0.014732810533029403,0.01164785553047404,4.393930234934604e-06,3.437379710571107e-07,0.015349887133182845
+HC07,adult_HC,0.5214881347597222,0.3879831386943364,0.5920127241187301,0.42517714503493304,0.3424633781763825,0.5779591174237304,0.15379112341450246,0.3848348960456584,0.020256173200879486,0.03840786189125376,0.03770892784345699,0.22049637365193359,0.2437099978314796,0.21962902568283735,0.17887535916209457,0.5440562932665857,0.3080921320831635,0.0024067482469607633,0.018778021244602466,0.019262128006522626,6.228314401310088e-06,0.0012567023515762318,0.03047289033836119
+HC09,adult_HC,0.724829512843263,0.2141111516265026,0.7559118143721711,0.20737716049130273,0.1646373217606943,0.6806432791607351,0.34932588761789346,0.6319487497416821,0.01324513702709413,0.04911371726570735,0.06013639181649101,0.12177620449160931,0.11308620996524195,0.1529241578838603,0.17202089347004046,0.45628491484571526,0.11365984707584212,0.012310116299033834,0.03218894469639563,0.012399256044637322,4.3695514871204374e-06,3.2560904620199554e-07,0.028931597437487085
+HC12,adult_HC,0.5383565912375967,0.2253686034035483,0.6355389246304164,0.2301213654126471,0.1597204301075269,0.658383226432957,0.3077021594835192,0.5456989247311828,0.018386129650792518,0.0396182351817105,0.05725806451612903,0.14131747280147078,0.15103993078110667,0.14623655913978495,0.17036177403608016,0.47138195008021894,0.2196236559139785,0.006100728219306452,0.02148759755317168,0.008870967741935484,0.0054506688593932585,0.00877012692027297,0.022311827956989248
+HC13,adult_HC,0.6201099129403839,0.22015631687310916,0.6646358462005796,0.19265180993261308,0.2777162825965121,0.6777767045744243,0.3168352420017339,0.5676985461378696,0.03772941639523175,0.0706727879216228,0.0842646622490357,0.1008177895103414,0.09039001275363125,0.11433092671348037,0.1768878264041745,0.5038512600159664,0.20393630699238452,0.001562035043571844,0.018249982677151163,0.008109979230540996,0.005226228072256365,7.146298945537565e-07,0.021659578676688756
+HC16,adult_HC,0.8181144955570874,0.22254061647901313,0.7819272172576103,0.11879442099098576,0.4907626378198461,0.6201141765266517,0.19718649410951272,0.511441647597254,0.008387768481704572,0.02329347184650707,0.05325566881630955,0.07719881802343602,0.07193979895526377,0.1367796962762638,0.28333420535545945,0.681419928700106,0.28073642604535054,0.005859708888745073,0.018007545712484484,0.010609527771999168,0.005105322724003279,0.008152760676125857,0.007177033492822967
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_full/summary.json

@@ -0,0 +1,202 @@
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+   "comp_l1": 0.5022299158951089,
+   "logfc_r_mean_cp10k": 0.43526410070392063,
+   "deg_top50_sum": 6
+  }
+ },
+ "tool_sha256": "6461b92fe9909bfebd2036e8b85de1c88a1f81d00ebeb694f34484c07cad502f",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 6.1
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw0/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3259,0.1761520351416447,0.28779071017741836,0.039052112345404365,0.49950180916078873
+zero_filled,T cell,pseudobulk_log1p_cpm,3259,0.13682795883896134,0.23446571402689154,-0.0174642380567042,0.639255485360912
+zero_filled,B cell,mean_cp10k,3304,0.21613690268636535,0.30092059959087647,0.12347631617724417,0.3519842560479891
+zero_filled,B cell,pseudobulk_log1p_cpm,3304,0.2972225556818956,0.2824129554276003,0.20068773365883122,0.4404245642108268
+zero_filled,Monocyte,mean_cp10k,3285,0.599004848186117,0.5511838088445075,0.3867550799701971,0.633993175270869
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3285,0.6072697483594588,0.6171521141280452,0.25378114698454196,0.7825369435068984
+zero_filled,NK cell,mean_cp10k,3226,0.11813874374241132,0.20406534279418406,0.011799530206414475,0.5309586183352744
+zero_filled,NK cell,pseudobulk_log1p_cpm,3226,-0.00345290111404066,0.06147951634862929,-0.06102793616582397,0.6749210076418135
+covered,T cell,mean_cp10k,3236,0.18602403449175037,0.22534639240042037,0.06537124454801105,0.5992363168698738
+covered,T cell,pseudobulk_log1p_cpm,3236,0.13928541121097426,0.2268410570227985,-0.023171783791083235,0.6863738621818279
+covered,B cell,mean_cp10k,3281,0.2288876528859392,0.24422033648992794,0.14227841113902367,0.4261392806857326
+covered,B cell,pseudobulk_log1p_cpm,3281,0.30095023787681296,0.28443767227612765,0.19714708903518546,0.47238291939376753
+covered,Monocyte,mean_cp10k,3262,0.6173231818937231,0.5180068919761085,0.4107333564150243,0.7235828102548404
+covered,Monocyte,pseudobulk_log1p_cpm,3262,0.6101956998827173,0.629223357693038,0.21547118560323597,0.8158558915610077
+covered,NK cell,mean_cp10k,3203,0.12579398618362372,0.12552372643885204,0.059830523769010935,0.6380336422831191
+covered,NK cell,pseudobulk_log1p_cpm,3203,-0.003576801962344368,0.05099084362427286,-0.0588148033261536,0.7242085888711991

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw0/per_donor.csv

@@ -0,0 +1,78 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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