Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot4/SPLIT.json

@@ -0,0 +1,76 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 4,
+ "reference": [
+  "N064_TOL",
+  "N064_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N158_AC",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC"
+ ],
+ "mixture": [
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N055_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N147_TOL",
+  "N150_BC",
+  "N159_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N002",
+  "N005",
+  "N064",
+  "N129",
+  "N158"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 9,
+ "n_mixture_samples": 24,
+ "reference_cells": 37876,
+ "states": 29,
+ "states_merged_minor": 0,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 5736,
+ "genes_kept": 5694,
+ "genes_dropped_not_bulk_valid": 0,
+ "genes_dropped_zero_reference": 42,
+ "aggregates_sha256": "ab2d1c650eea9381badef93975c96714399d8f538655888c433321af04663247",
+ "files": {
+  "reference.tsv.gz": "14d7b7832c91af4fdb3af3f32d138d01c5bf421c8ee10c77f0a2786da3bf44fc",
+  "state_types.tsv": "3aeca97ec36ec1c8cee6c7622ff9fa96d61f6e2119b51be9d06f39a1340bd3f2",
+  "mixture.tsv.gz": "88e7d489fb82c7f7aec2ddf3d304c36a46d9fbbd47dbd3f23d3bdf31e4cdd8ae"
+ },
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot4/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	172
+B cell|Memory B cell	B cell	488
+B cell|Naive B cell	B cell	737
+B cell|Plasma cell	B cell	170
+B cell|Transitional B cell	B cell	305
+DC|ASDC	DC	23
+DC|cDC1	DC	20
+DC|cDC2	DC	357
+DC|pDC	DC	169
+Monocyte|CD14 monocyte	Monocyte	6247
+Monocyte|CD16 monocyte	Monocyte	2438
+Monocyte|Intermediate monocyte	Monocyte	878
+NK cell|CD56bright NK cell	NK cell	305
+NK cell|CD56dim NK cell	NK cell	2783
+NK cell|Proliferating NK cell	NK cell	1381
+Other|Erythrocyte	Other	128
+Other|ILC	Other	98
+Other|Platelet	Other	153
+Other|Progenitor cell	Other	112
+T cell|CD8aa	T cell	369
+T cell|DN T cell	T cell	873
+T cell|MAIT	T cell	492
+T cell|Memory CD4 T cell	T cell	4544
+T cell|Memory CD8 T cell	T cell	5000
+T cell|Naive CD4 T cell	T cell	5529
+T cell|Naive CD8 T cell	T cell	875
+T cell|Proliferating T cell	T cell	372
+T cell|Treg	T cell	1944
+T cell|gdT	T cell	914

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot4_full/SPLIT.json

@@ -0,0 +1,77 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "fewshot",
+ "idx": 4,
+ "reference": [
+  "N064_TOL",
+  "N064_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N158_AC",
+  "N002_TOL",
+  "N002_FU1",
+  "N005_BC",
+  "N005_AC"
+ ],
+ "mixture": [
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N055_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N147_TOL",
+  "N150_BC",
+  "N159_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1"
+ ],
+ "train_donors": [
+  "N002",
+  "N005",
+  "N064",
+  "N129",
+  "N158"
+ ],
+ "run_json_check": true,
+ "n_reference_samples": 9,
+ "n_mixture_samples": 24,
+ "reference_cells": 37876,
+ "states": 29,
+ "states_merged_minor": 0,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 18172,
+ "genes_kept": 15934,
+ "genes_dropped_not_bulk_valid": 30,
+ "genes_dropped_zero_reference": 2208,
+ "gene_mode": "full",
+ "aggregates_sha256": "0dfbed64479372c0b0cca489dd54f65c6290d9a89da4f1a09d4accaa7140d35f",
+ "files": {
+  "reference.tsv.gz": "ee22541059f7127b7b5da32417e2434b2011caa6b5bed2b108b7d18b792404c1",
+  "state_types.tsv": "3aeca97ec36ec1c8cee6c7622ff9fa96d61f6e2119b51be9d06f39a1340bd3f2",
+  "mixture.tsv.gz": "cc311a88b1b6204cf65216b10fbc162633621ff5959b9d6aa722834090466a95"
+ },
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/fewshot4_full/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	172
+B cell|Memory B cell	B cell	488
+B cell|Naive B cell	B cell	737
+B cell|Plasma cell	B cell	170
+B cell|Transitional B cell	B cell	305
+DC|ASDC	DC	23
+DC|cDC1	DC	20
+DC|cDC2	DC	357
+DC|pDC	DC	169
+Monocyte|CD14 monocyte	Monocyte	6247
+Monocyte|CD16 monocyte	Monocyte	2438
+Monocyte|Intermediate monocyte	Monocyte	878
+NK cell|CD56bright NK cell	NK cell	305
+NK cell|CD56dim NK cell	NK cell	2783
+NK cell|Proliferating NK cell	NK cell	1381
+Other|Erythrocyte	Other	128
+Other|ILC	Other	98
+Other|Platelet	Other	153
+Other|Progenitor cell	Other	112
+T cell|CD8aa	T cell	369
+T cell|DN T cell	T cell	873
+T cell|MAIT	T cell	492
+T cell|Memory CD4 T cell	T cell	4544
+T cell|Memory CD8 T cell	T cell	5000
+T cell|Naive CD4 T cell	T cell	5529
+T cell|Naive CD8 T cell	T cell	875
+T cell|Proliferating T cell	T cell	372
+T cell|Treg	T cell	1944
+T cell|gdT	T cell	914