Archive 4 checkpoints (1-4)

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+ M main.pdf
+ M sections/methods.tex
+ M sections/overview_figure.tex
+ M sections/supplementary_methods.tex
+ M supplementary.pdf
+?? editorial/fig1_nature_redesign_plan_20261006.md
+?? figures/drafts/fig01_nature_preview_20261006.png
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+?? scripts/build_figure1_architecture_nature.py
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paper-releases/pbisc-diffusion/updates/20261010T153319Z-manuscript-rewrite-from-deck/diffusion/dataset/server_1/manuscript/archive/pre_rewrite_20261010/authors.tex

@@ -0,0 +1,3 @@
+% Author-only metadata. Replace before any submission.
+% No author identities, affiliations or competing-interest declarations inferred.
+\author{Authors and their institutions: to be confirmed}

paper-releases/pbisc-diffusion/updates/20261010T153319Z-manuscript-rewrite-from-deck/diffusion/dataset/server_1/manuscript/archive/pre_rewrite_20261010/main.tex

@@ -0,0 +1,28 @@
+% Overleaf main document. Uses the official Springer Nature authoring class.
+% Select pdfLaTeX on Overleaf; all figures and citations are local files.
+\documentclass[pdflatex,sn-nature]{sn-jnl}
+\usepackage{graphicx}
+\usepackage{amsmath,amssymb}
+\usepackage{booktabs}
+\usepackage{array}
+\usepackage{multirow}
+\usepackage{longtable}
+\usepackage{microtype}
+\newcommand{\method}{PBISC-Diffusion}
+\newcommand{\indicator}{\mathbb{I}}
+\begin{document}
+\raggedbottom
+\title{Diffusion for single-cell gene expression from bulk RNA data}
+\input{authors}
+\abstract{\input{sections/abstract}}
+\keywords{bulk RNA sequencing, single-cell generation, diffusion, unmeasured genes, immune gene expression}
+\maketitle
+\raggedbottom
+\input{sections/introduction}
+\input{sections/overview_figure}
+\input{sections/results}
+\input{sections/discussion}
+\input{sections/methods}
+\input{sections/declarations}
+\bibliography{references}
+\end{document}

paper-releases/pbisc-diffusion/updates/20261010T153319Z-manuscript-rewrite-from-deck/diffusion/dataset/server_1/manuscript/archive/pre_rewrite_20261010/main_before_rewrite.pdf

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