junidude14 commited on
Commit
c3094a7
·
verified ·
1 Parent(s): b0752f1

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/scoring_support.json ADDED
@@ -0,0 +1,69 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-score-binding.v1",
3
+ "support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252",
4
+ "cohort": "immicro",
5
+ "unit": "fold0_n40",
6
+ "test_sample_ids": [
7
+ "HS3",
8
+ "HS6",
9
+ "HS7",
10
+ "HS13",
11
+ "HS18",
12
+ "HS31",
13
+ "HS34",
14
+ "HS37",
15
+ "HS38",
16
+ "HS52",
17
+ "HS58",
18
+ "HS60",
19
+ "HS66",
20
+ "HS81",
21
+ "HS82",
22
+ "HS83",
23
+ "HS85",
24
+ "HS86",
25
+ "HS95",
26
+ "HS98",
27
+ "HS101",
28
+ "HS107"
29
+ ],
30
+ "test_donor_ids": [
31
+ "HS3",
32
+ "HS6",
33
+ "HS7",
34
+ "HS13",
35
+ "HS18",
36
+ "HS31",
37
+ "HS34",
38
+ "HS37",
39
+ "HS38",
40
+ "HS52",
41
+ "HS58",
42
+ "HS60",
43
+ "HS66",
44
+ "HS81",
45
+ "HS82",
46
+ "HS83",
47
+ "HS85",
48
+ "HS86",
49
+ "HS95",
50
+ "HS98",
51
+ "HS101",
52
+ "HS107"
53
+ ],
54
+ "arm_bindings": {
55
+ "lora": {
56
+ "arm": "lora",
57
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
58
+ "npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
59
+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.log",
60
+ "receipt_sha256": "c9b3649a588c9227f77d5d53a1ba0724ae5247cb086e76d63f1c5291535fc67f",
61
+ "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/RUN.json",
62
+ "source_binding_sha256": "3e4b3dcd38fefcc2828203c86d0a4476eb9928e1a20e6e2bb9375719ef578e84",
63
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
64
+ "condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
65
+ "checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
66
+ "support_sha256": "2418da2d8050f3ec761109aa5c1e5da234d88bc8bd7ed5f540dc44c10d046252"
67
+ }
68
+ }
69
+ }
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/receipts/score.json ADDED
@@ -0,0 +1,61 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "state": "completed",
3
+ "stage": "score",
4
+ "at": "2026-10-15T11:42:19.988496+00:00",
5
+ "outputs": [
6
+ {
7
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/arms/lora/generated_cells.parquet",
8
+ "sha256": "b56725d984faec09580b00a3989cd772f28c9b3eaec9d224e39948c33a7f7ed2",
9
+ "bytes": 277240
10
+ },
11
+ {
12
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/arms/lora/labels/labels.manifest.json",
13
+ "sha256": "e0e3a138f8dca6be7db035751bb5f9ea2a37ae539438aea7ef76560fd375561a",
14
+ "bytes": 5058
15
+ },
16
+ {
17
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/arms/lora/labels/labels.parquet",
18
+ "sha256": "23a037211a08c1b027f7226acc8e225f24d696658af5c8458f088dbaf03b2483",
19
+ "bytes": 782545
20
+ },
21
+ {
22
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/per_donor.csv",
23
+ "sha256": "65ffc7c8424d20f2e11c2a99de3c970fc4e3f0d6e7c973b10545c3af9d9f80ae",
24
+ "bytes": 8466
25
+ },
26
+ {
27
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/summary.json",
28
+ "sha256": "18b0693dfd7eb7409afc00ae1fd469ea1f2e0d91afa82384a97ac47ab254fef9",
29
+ "bytes": 8496
30
+ },
31
+ {
32
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/scoring_support.json",
33
+ "sha256": "861cf3ae9d2a6030d36473475531834086a608bdaccdf57e62215b58645e9afc",
34
+ "bytes": 2076
35
+ }
36
+ ],
37
+ "support_sha256": "ae96bceb313de5c71379681084098d5d1288078b47cc602f229d39829510d522",
38
+ "binding": {
39
+ "arm": "lora",
40
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n20/lora.npz",
41
+ "npz_sha256": "023c79e955d16f9b0276de836bfdf729f3b431fafa0923b0fdc8b65076366501",
42
+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n20/lora.log",
43
+ "receipt_sha256": "3ebca6a1e17bccc4e1f1d7a49b3c5afc780073c7e2586ac30922e9a72daa3df5",
44
+ "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold3/n20/lora/RUN.json",
45
+ "source_binding_sha256": "7488489b3fd805658231a45b4f1bc2874d03ca50cd1dd3858ff142fa1c3b3ae9",
46
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n20/test_raw.npz",
47
+ "condition_sha256": "dce8858d52803f436b448466b5619f696cb6df84bb2051772a78d792f089669b",
48
+ "checkpoint_sha256": "634c54e58b7885342ced223182f8c0bc90add95bd0b40379cdf8602ba3147bfc",
49
+ "support_sha256": "ae96bceb313de5c71379681084098d5d1288078b47cc602f229d39829510d522"
50
+ },
51
+ "reuse": {
52
+ "source_summary": {
53
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n20/score/summary.json",
54
+ "sha256": "9335fe5e60333b4f7bb76d991e033e815c781ab8c358f8af639f8dc01b9cd461",
55
+ "bytes": 7665
56
+ },
57
+ "source_arm": "lora",
58
+ "validated_support_sha256": "ae96bceb313de5c71379681084098d5d1288078b47cc602f229d39829510d522",
59
+ "annotation_reexecuted": false
60
+ }
61
+ }
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/per_donor.csv ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
2
+ lora,HS1,DB1,1500,4384,150,0.7,0.6332116788321168,0.0793333333333333,0.0586222627737226,0.0786666666666666,0.1382299270072992,0.0953333333333333,0.1439324817518248,0.038,0.0184762773722627,0.0086666666666666,0.0075273722627737,0.2163248175182481,0.1477341288426135,0.9089834836460318,3,False,0.9933333333333332,0.98,0.9933333333333332,0.9866666666666668,7.866666666666666,13.822992700729928,2623.0,1738.0
3
+ lora,HS4,DB4,1500,4167,150,0.6486666666666666,0.54307655387569,0.0746666666666666,0.0453563714902807,0.1813333333333333,0.2371010319174466,0.06,0.142548596112311,0.0226666666666666,0.0242380609551235,0.0126666666666666,0.007679385649148,0.2797753779697624,0.2034821822143433,0.9063103741435028,18,False,0.9866666666666668,0.92,0.9933333333333332,0.9866666666666668,18.133333333333333,23.71010319174466,2843.0,2111.0
4
+ lora,HS10,DB4,1500,4115,150,0.646,0.5244228432563791,0.162,0.1834750911300121,0.1186666666666666,0.1300121506682867,0.0413333333333333,0.1375455650060753,0.022,0.0213851761846901,0.01,0.0031591737545565,0.2580656136087485,0.3134557004122763,0.9064988738842774,11,False,0.9666666666666668,0.9533333333333334,0.9666666666666668,0.9866666666666668,11.866666666666667,13.001215066828674,2867.5,2063.0
5
+ lora,HS15,DB4,1500,4592,150,0.49,0.4697299651567944,0.0933333333333333,0.0463850174216027,0.3253333333333333,0.3728222996515679,0.05,0.0877613240418118,0.034,0.0195993031358885,0.0073333333333333,0.0037020905923344,0.1705005807200929,0.3877779459374335,0.9183668627065558,3,False,0.9866666666666668,0.9133333333333332,0.9933333333333332,0.9933333333333332,32.53333333333333,37.2822299651568,2805.0,2302.0
6
+ lora,HS23,DB6,1500,1680,150,0.62,0.5630952380952381,0.0906666666666666,0.0994047619047619,0.2193333333333333,0.2386904761904762,0.046,0.069047619047619,0.02,0.025,0.004,0.0047619047619047,0.1138095238095238,0.1625760901354886,0.9170575357395748,4,False,0.9866666666666668,0.9733333333333334,0.9933333333333332,0.9933333333333332,21.933333333333334,23.86904761904762,2873.0,2296.0
7
+ lora,HS29,DB5,1500,4285,150,0.6433333333333333,0.6550758459743291,0.068,0.0366394399066511,0.198,0.198833138856476,0.0526666666666666,0.0823803967327888,0.0273333333333333,0.0228704784130688,0.0106666666666666,0.0042007001166861,0.0845787631271879,0.1141214498312325,0.9107201326198944,7,False,0.98,0.9466666666666668,0.9866666666666668,1.0,19.8,19.88331388564761,2861.0,2230.0
8
+ lora,HS30,DB3,1500,6447,150,0.6506666666666666,0.5667752442996743,0.0586666666666666,0.0812781138514037,0.198,0.2647743136342484,0.0313333333333333,0.0493252675663099,0.0513333333333333,0.0348999534667287,0.01,0.0029471071816348,0.2147553901039242,0.2000760901354885,0.9061181897903688,1,True,0.9866666666666668,0.98,1.0,1.0,19.8,26.47743136342485,2735.5,2410.0
9
+ lora,HS40,DB2,1500,3867,150,0.6413333333333333,0.6938194983191104,0.0453333333333333,0.0457719162141194,0.1533333333333333,0.1549004396172743,0.1046666666666666,0.0752521334367726,0.046,0.0263770364623739,0.0093333333333333,0.0038789759503491,0.1089837083010085,0.1789519520251484,0.9050492713191598,4,False,0.9933333333333332,1.0,0.9866666666666668,1.0,15.333333333333332,15.490043961727435,2358.0,1477.0
10
+ lora,HS49,DB3,1500,3893,150,0.732,0.6773696378114564,0.048,0.0272283585923452,0.1166666666666666,0.1857179553043925,0.0533333333333333,0.0734651939378371,0.0353333333333333,0.0305676855895196,0.0146666666666666,0.005651168764449,0.1783662984844593,0.1543723943517594,0.9017650065042264,2,False,0.98,0.98,0.9866666666666668,1.0,11.666666666666666,18.57179553043925,2829.5,2103.0
11
+ lora,HS53,DB7,1500,1544,150,0.708,0.7506476683937824,0.0826666666666666,0.1023316062176165,0.1166666666666666,0.082901554404145,0.0466666666666666,0.0408031088082901,0.0326666666666666,0.0187823834196891,0.0133333333333333,0.0045336787564766,0.1246252158894646,0.352065151201056,0.8918119683999897,12,False,0.98,0.98,0.9933333333333332,1.0,11.666666666666666,8.290155440414509,2684.0,2239.5
12
+ lora,HS61,DB7,1500,1607,150,0.454,0.4971997510889857,0.0906666666666666,0.1001866832607343,0.308,0.2986932171748599,0.1113333333333333,0.0709396390790292,0.0266666666666666,0.028624766645924,0.0093333333333333,0.0043559427504667,0.1093557353246214,0.2978358910066771,0.9204772134365397,4,False,0.98,0.9533333333333334,0.9866666666666668,1.0,30.8,29.869321717485995,2602.5,2387.0
13
+ lora,HS62,DB3,1500,4121,150,0.7446666666666667,0.6699830138315943,0.0666666666666666,0.0778937151176898,0.096,0.1400145595729192,0.054,0.0888133948070856,0.0306666666666666,0.0206260616355253,0.008,0.0026692550351856,0.1801100056620561,0.1313498053106149,0.9027186555392682,1,True,0.9733333333333334,1.0,0.9866666666666668,1.0,9.6,14.00145595729192,2825.0,2159.0
14
+ lora,HS63,DB5,1500,4391,150,0.726,0.7214757458437714,0.0746666666666666,0.0546572534730129,0.0946666666666666,0.1505351856069232,0.0553333333333333,0.0530630835800501,0.034,0.0166249145980414,0.0153333333333333,0.0036438168982008,0.1117370378805131,0.2311605312893207,0.9009204193054682,9,False,0.9933333333333332,0.96,1.0,0.9866666666666668,9.466666666666669,15.053518560692323,2885.5,2196.0
15
+ lora,HS69,DB6,1500,1765,150,0.694,0.6957507082152975,0.082,0.0793201133144475,0.1453333333333333,0.1563739376770538,0.052,0.0464589235127478,0.0166666666666666,0.0203966005665722,0.01,0.001699716713881,0.0330424929178471,0.1884573997295827,0.9118641695354512,6,False,0.9933333333333332,0.98,1.0,1.0,14.533333333333337,15.63739376770538,2648.5,1982.0
16
+ lora,HS78,DB1,1500,4299,150,0.67,0.6366596882996045,0.128,0.087927424982554,0.0746666666666666,0.1228192602930914,0.0846666666666666,0.1139799953477553,0.0306666666666666,0.0281460804838334,0.012,0.0104675505931612,0.1549318446150268,0.1372284367153671,0.899879379424883,2,False,0.9933333333333332,1.0,1.0,1.0,7.466666666666668,12.28192602930914,2662.0,1732.0
17
+ lora,HS79,DB5,1500,4239,150,0.68,0.6161830620429346,0.1073333333333333,0.096485020051899,0.1386666666666666,0.158763859400802,0.0493333333333333,0.1118188251946213,0.0166666666666666,0.0141542816702052,0.008,0.0025949516395376,0.1651653691908469,0.0867962928517489,0.9115063342124776,9,False,1.0,0.8933333333333333,1.0,0.9933333333333332,13.866666666666664,15.876385940080208,2864.0,2188.0
18
+ lora,HS89,DB2,1500,3796,150,0.666,0.5795574288724974,0.042,0.0455742887249736,0.1593333333333333,0.1983667017913593,0.0826666666666666,0.1467334035827186,0.036,0.0221285563751317,0.014,0.0076396206533192,0.2133487881981032,0.1294669861737855,0.9049579314567808,4,False,0.9866666666666668,1.0,0.9933333333333332,1.0,15.933333333333334,19.836670179135933,2513.0,1510.0
19
+ lora,HS90,DB7,1500,1291,150,0.6966666666666667,0.6839659178931061,0.068,0.0658404337722695,0.1386666666666666,0.1363284275755228,0.0486666666666666,0.0844306738962045,0.0326666666666666,0.0240123934934159,0.0153333333333333,0.005422153369481,0.0715280144590756,0.1539775367919731,0.8826184864669774,14,False,0.98,0.9733333333333334,0.9866666666666668,1.0,13.866666666666664,13.632842757552286,2613.5,2183.0
20
+ lora,HS100,DB6,1500,1838,150,0.6486666666666666,0.6784548422198041,0.074,0.0500544069640914,0.192,0.1354733405875952,0.0393333333333333,0.1158868335146898,0.0306666666666666,0.0119695321001088,0.0153333333333333,0.0081610446137105,0.2126833514689881,0.1851796225957409,0.9095988815655108,7,False,1.0,0.9133333333333332,1.0,0.9933333333333332,19.2,13.547334058759525,2943.5,2221.0
21
+ lora,HS106,DB2,1500,3949,150,0.5533333333333333,0.4084578374271967,0.0646666666666666,0.0395036718156495,0.2513333333333333,0.2985565966067359,0.0846666666666666,0.2114459356799189,0.0333333333333333,0.0354520131678906,0.0126666666666666,0.0065839453026082,0.3522424242424242,0.4984721560729047,0.9181380380825904,2,False,1.0,0.98,0.9933333333333332,1.0,25.133333333333336,29.855659660673588,2545.5,1685.0
22
+ lora,HS110,DB1,1500,4176,150,0.596,0.5744731800766284,0.1766666666666666,0.1285919540229885,0.1246666666666666,0.1515804597701149,0.06,0.1087164750957854,0.034,0.0308908045977011,0.0086666666666666,0.0057471264367816,0.1512605363984673,0.1543747746352972,0.9090169323645896,3,False,0.9733333333333334,1.0,0.9866666666666668,1.0,12.466666666666669,15.158045977011495,2530.5,1704.5
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n20/lora/score/summary.json ADDED
@@ -0,0 +1,214 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "paired_ft_scores.v1",
3
+ "dataset": "immicro",
4
+ "written_utc": "2026-10-15T09:51:30.356912+00:00",
5
+ "command": [
6
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
7
+ "--dataset",
8
+ "immicro",
9
+ "--out",
10
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n20/score",
11
+ "--arm",
12
+ "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n20/lora.npz",
13
+ "--condition",
14
+ "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n20/test_raw.npz",
15
+ "--donors",
16
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n20/test_samples.txt",
17
+ "--threads",
18
+ "2",
19
+ "--no-contrast",
20
+ "--no-deg"
21
+ ],
22
+ "arms": [
23
+ "lora"
24
+ ],
25
+ "donors": [
26
+ "HS1",
27
+ "HS4",
28
+ "HS10",
29
+ "HS15",
30
+ "HS23",
31
+ "HS29",
32
+ "HS30",
33
+ "HS40",
34
+ "HS49",
35
+ "HS53",
36
+ "HS61",
37
+ "HS62",
38
+ "HS63",
39
+ "HS69",
40
+ "HS78",
41
+ "HS79",
42
+ "HS89",
43
+ "HS90",
44
+ "HS100",
45
+ "HS106",
46
+ "HS110"
47
+ ],
48
+ "n_donors": 21,
49
+ "reference": {
50
+ "cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
51
+ "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
52
+ "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
53
+ "n_r1_cells": 3150,
54
+ "pca": {
55
+ "n_components": 50,
56
+ "explained_variance_ratio_sum": 0.3122588098049164,
57
+ "n_fit_cells": 3150
58
+ },
59
+ "r2_control": {
60
+ "precision": 0.993968253968254,
61
+ "coverage": 1.0,
62
+ "density": 2.678,
63
+ "n_query": 3150,
64
+ "depth_matched": {
65
+ "precision": 0.9926984126984127,
66
+ "coverage": 1.0,
67
+ "density": 2.6237142857142857
68
+ }
69
+ },
70
+ "observed_l1_loo_null_mean": 0.20994821515523107
71
+ },
72
+ "contrast_definition": {
73
+ "enabled": false,
74
+ "reason": "--no-contrast"
75
+ },
76
+ "deg_definition": {
77
+ "enabled": false,
78
+ "reason": "--no-deg"
79
+ },
80
+ "headline": {
81
+ "lora": {
82
+ "comp_l1": 0.16691385189954241,
83
+ "comp_l1_obs_loo_null": 0.20994821515523107,
84
+ "precision": 0.9863492063492063,
85
+ "coverage": 0.9657142857142857,
86
+ "precision_dm": 0.9917460317460317,
87
+ "coverage_dm": 0.9961904761904762,
88
+ "pb_r_median": 0.9064988738842774,
89
+ "pb_top1": 0.09523809523809523,
90
+ "mono_pct_gen": 16.330158730158733,
91
+ "mono_pct_obs": 18.816613491945674,
92
+ "median_umi_gen": 2717.0,
93
+ "median_umi_obs": 2016.0,
94
+ "seconds": 8.4
95
+ }
96
+ },
97
+ "per_arm": {
98
+ "lora": {
99
+ "arm": "lora",
100
+ "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n20/lora.npz",
101
+ "npz_sha256": "023c79e955d16f9b0276de836bfdf729f3b431fafa0923b0fdc8b65076366501",
102
+ "receipt_verified": true,
103
+ "generation": {
104
+ "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold3/n20/lora/checkpoint_ft.pt",
105
+ "checkpoint_sha256": "634c54e58b7885342ced223182f8c0bc90add95bd0b40379cdf8602ba3147bfc",
106
+ "input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n20/test_raw.npz",
107
+ "input_condition_sha256": "dce8858d52803f436b448466b5619f696cb6df84bb2051772a78d792f089669b",
108
+ "seed": 20260928,
109
+ "steps": 50,
110
+ "support_readout": "bernoulli",
111
+ "weights": "ema"
112
+ },
113
+ "condition_for_broadcast": null,
114
+ "poisson": {
115
+ "seed": 20260916,
116
+ "rule": "whole NPZ, rows in NPZ order",
117
+ "nnz_whole_npz": 9452562,
118
+ "median_library_whole_npz_panel": 2718.0,
119
+ "n_rows_whole_npz": 31500
120
+ },
121
+ "annotation": {
122
+ "model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
123
+ "zero_padded_model_genes": 1,
124
+ "label_counts": {
125
+ "T cell": 20414,
126
+ "Monocyte": 5144,
127
+ "B cell": 2666,
128
+ "NK cell": 1955,
129
+ "DC": 977,
130
+ "Other": 344
131
+ },
132
+ "mean_l2_max_prob": 0.9148488323281682,
133
+ "predict_seconds": 3.6
134
+ },
135
+ "n_donors": 21,
136
+ "n_generated_cells": 31500,
137
+ "composition": {
138
+ "l1_mean": 0.16691385189954241,
139
+ "l1_median": 0.16516536919084698,
140
+ "l1_obs_loo_null_mean": 0.20994821515523107,
141
+ "l1_generated_loo_mean_vs_observed_mean": 0.2193119754315128,
142
+ "composition_top1": 0.23809523809523808,
143
+ "mean_fraction_generated": {
144
+ "T cell": 0.648063,
145
+ "B cell": 0.084635,
146
+ "Monocyte": 0.163302,
147
+ "NK cell": 0.062063,
148
+ "DC": 0.031016,
149
+ "Other": 0.010921
150
+ },
151
+ "mean_fraction_observed": {
152
+ "T cell": 0.611399,
153
+ "B cell": 0.07393,
154
+ "Monocyte": 0.188166,
155
+ "NK cell": 0.097826,
156
+ "DC": 0.023582,
157
+ "Other": 0.005097
158
+ }
159
+ },
160
+ "pseudobulk": {
161
+ "n_genes": 5508,
162
+ "r_median": 0.9064988738842774,
163
+ "r_mean": 0.9068751495306725,
164
+ "top1": 0.09523809523809523,
165
+ "n_top1": 2,
166
+ "own_rank_median": 4.0,
167
+ "chance_top1": 0.047619047619047616
168
+ },
169
+ "precision_coverage": {
170
+ "precision": 0.9863492063492063,
171
+ "coverage": 0.9657142857142857,
172
+ "density": 2.789174603174603,
173
+ "n_query": 3150,
174
+ "n_reference": 3150
175
+ },
176
+ "precision_coverage_depth_matched": {
177
+ "precision": 0.9917460317460317,
178
+ "coverage": 0.9961904761904762,
179
+ "density": 3.9284444444444446,
180
+ "detected_median_before": {
181
+ "R1": 367.0,
182
+ "Q": 285.0
183
+ },
184
+ "detected_median_after": {
185
+ "R1": 285.0,
186
+ "Q": 285.0
187
+ }
188
+ },
189
+ "monocyte_pct": {
190
+ "generated_mean_over_donors": 16.330158730158733,
191
+ "observed_mean_over_donors": 18.816613491945674,
192
+ "generated_pooled_cells": 16.330158730158733
193
+ },
194
+ "median_umi_per_cell_scoring_genes": {
195
+ "generated_pooled": 2717.0,
196
+ "observed_pooled": 2016.0,
197
+ "generated_mean_of_donor_medians": 2719.666748046875,
198
+ "observed_mean_of_donor_medians": 2043.6666666666667
199
+ },
200
+ "seconds": 8.4
201
+ }
202
+ },
203
+ "code_sha256": {
204
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
205
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
206
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
207
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
208
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
209
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
210
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
211
+ },
212
+ "seconds": 10.4,
213
+ "core_reused_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n20/score"
214
+ }