Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/smoke_giroux_d0_20261002T152531.log

@@ -0,0 +1,35 @@
+JOB_START 2026-10-02T15:25:31+09:00 --design fewshot --dataset giroux2022 --draws 0
+15:25:32 giroux2022 fewshot_n5/draw0: 11 scored samples (6 case / 5 control), 5498 genes for the disease scores (65 excluded)
+15:25:36 split half: 98594 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.956, B 0.778, Mono 0.899, NK 0.879 (4.0 s; full aggregates rebuilt = cache)
+15:25:43 zs_raw: 16500 cells; r mean_cp10k T 0.170/0.021, B 0.103/0.031, Mono 0.226/0.116, NK 0.087/-0.016 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (6 s)
+15:25:48 zs_pseudo: 16500 cells; r mean_cp10k T 0.531/0.449, B 0.286/0.226, Mono 0.214/0.169, NK 0.360/0.284 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
+15:25:50 zs_cal: 16500 cells; r mean_cp10k T 0.126/0.011, B 0.076/0.004, Mono 0.178/0.084, NK 0.068/-0.023 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (2 s)
+15:25:52 lora5: 16500 cells; r mean_cp10k T 0.398/0.253, B 0.174/0.125, Mono 0.313/0.209, NK 0.089/0.054 (Pearson/Spearman); repro PASS (max |d| 8.7e-17) (2 s)
+15:25:54 scsemi5: 16500 cells; r mean_cp10k T 0.467/0.414, B 0.259/0.148, Mono 0.406/0.242, NK 0.353/0.249 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
+15:26:01 limma: 68 jobs in 7 s (0 not ok)
+15:26:01 unit fewshot_n5/draw0 of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0 in 29.1 s; reproduction PASS
+	Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design fewshot --dataset giroux2022 --draws 0 --threads 4"
+	User time (seconds): 26.36
+	System time (seconds): 2.68
+	Percent of CPU this job got: 97%
+	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:29.78
+	Average shared text size (kbytes): 0
+	Average unshared data size (kbytes): 0
+	Average stack size (kbytes): 0
+	Average total size (kbytes): 0
+	Maximum resident set size (kbytes): 2058136
+	Average resident set size (kbytes): 0
+	Major (requiring I/O) page faults: 0
+	Minor (reclaiming a frame) page faults: 275421
+	Voluntary context switches: 6101
+	Involuntary context switches: 94
+	Swaps: 0
+	File system inputs: 2562040
+	File system outputs: 67656
+	Socket messages sent: 0
+	Socket messages received: 0
+	Signals delivered: 0
+	Page size (bytes): 4096
+	Exit status: 0
+JOB_EXIT 0 30s --design fewshot --dataset giroux2022 --draws 0 --threads 4
+UNIT_EXIT 0

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/units.tsv

@@ -0,0 +1,4 @@
+2026-10-02T15:25:31+09:00	start	contrast-smoke_giroux_d0-20261002T152531	spark-fa6b	MemAvailable=107GiB	threads=4	mem=16G	/tmp/claude-1000/-home-sj-server-1/79dca609-735c-41b5-9564-5c792443e372/scratchpad/smoke1.jobs
+2026-10-02T15:26:49+09:00	start	contrast-imperial-20261002T152649	spark-fa6b	MemAvailable=102GiB	threads=4	mem=22G	/tmp/claude-1000/-home-sj-server-1/79dca609-735c-41b5-9564-5c792443e372/scratchpad/imperial.jobs
+2026-10-02T15:26:49+09:00	start	contrast-sepsis-20261002T152649	spark-fa6b	MemAvailable=102GiB	threads=4	mem=16G	/tmp/claude-1000/-home-sj-server-1/79dca609-735c-41b5-9564-5c792443e372/scratchpad/sepsis.jobs
+2026-10-02T15:26:49+09:00	start	contrast-small-20261002T152649	spark-fa6b	MemAvailable=102GiB	threads=4	mem=10G	/tmp/claude-1000/-home-sj-server-1/79dca609-735c-41b5-9564-5c792443e372/scratchpad/small.jobs

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/compact_fewshot.csv

@@ -0,0 +1,101 @@
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