Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/00c2e97ded2e6dee/summary.json

@@ -0,0 +1,212 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "immicro",
+ "written_utc": "2026-10-15T12:00:51.939211+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "immicro",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score",
+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/test_sample_ids.txt",
+  "--threads",
+  "2",
+  "--arm",
+  "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.npz",
+  "--no-contrast",
+  "--no-deg"
+ ],
+ "arms": [
+  "lora"
+ ],
+ "donors": [
+  "HS2",
+  "HS12",
+  "HS16",
+  "HS17",
+  "HS21",
+  "HS35",
+  "HS36",
+  "HS39",
+  "HS44",
+  "HS46",
+  "HS47",
+  "HS48",
+  "HS51",
+  "HS56",
+  "HS57",
+  "HS65",
+  "HS68",
+  "HS72",
+  "HS84",
+  "HS92",
+  "HS96",
+  "HS109"
+ ],
+ "n_donors": 22,
+ "reference": {
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+  "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
+  "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
+  "n_r1_cells": 3300,
+  "pca": {
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+   "explained_variance_ratio_sum": 0.2977375388145447,
+   "n_fit_cells": 3300
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+  "r2_control": {
+   "precision": 0.9954545454545455,
+   "coverage": 1.0,
+   "density": 2.5628484848484847,
+   "n_query": 3300,
+   "depth_matched": {
+    "precision": 0.9942424242424243,
+    "coverage": 1.0,
+    "density": 2.5162121212121216
+   }
+  },
+  "observed_l1_loo_null_mean": 0.1502983690725227
+ },
+ "contrast_definition": {
+  "enabled": false,
+  "reason": "--no-contrast"
+ },
+ "deg_definition": {
+  "enabled": false,
+  "reason": "--no-deg"
+ },
+ "headline": {
+  "lora": {
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+   "comp_l1_obs_loo_null": 0.1502983690725227,
+   "precision": 0.9924242424242424,
+   "coverage": 0.923939393939394,
+   "precision_dm": 0.9951515151515151,
+   "coverage_dm": 0.990909090909091,
+   "pb_r_median": 0.9034703816824057,
+   "pb_top1": 0.09090909090909091,
+   "mono_pct_gen": 11.478787878787879,
+   "mono_pct_obs": 15.179849365920914,
+   "median_umi_gen": 2650.0,
+   "median_umi_obs": 1887.0,
+   "seconds": 8.1
+  }
+ },
+ "per_arm": {
+  "lora": {
+   "arm": "lora",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.npz",
+   "npz_sha256": "16acb65838878e0a60dfef81b5726f004ea18047eb3b3b39dbe802dabcf99a12",
+   "receipt_verified": true,
+   "generation": {
+    "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/checkpoint_ft.pt",
+    "checkpoint_sha256": "e4877d6f68387128ce43a3d2de497754090c9b95d621f001c24a6e45e19062f8",
+    "input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold1/n40/test_raw.npz",
+    "input_condition_sha256": "f64c30e0d9cd130f95402573ee1b53826b57447fb3d7e8de727481c86f243d9d",
+    "seed": 20260928,
+    "steps": 50,
+    "support_readout": "bernoulli",
+    "weights": "ema"
+   },
+   "condition_for_broadcast": null,
+   "poisson": {
+    "seed": 20260916,
+    "rule": "whole NPZ, rows in NPZ order",
+    "nnz_whole_npz": 9401682,
+    "median_library_whole_npz_panel": 2651.0,
+    "n_rows_whole_npz": 33000
+   },
+   "annotation": {
+    "model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
+    "zero_padded_model_genes": 1,
+    "label_counts": {
+     "T cell": 23235,
+     "Monocyte": 3788,
+     "B cell": 2729,
+     "NK cell": 1952,
+     "DC": 953,
+     "Other": 343
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+    "mean_l2_max_prob": 0.9158809047490358,
+    "predict_seconds": 4.0
+   },
+   "n_donors": 22,
+   "n_generated_cells": 33000,
+   "composition": {
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+    "l1_median": 0.16916738536991674,
+    "l1_obs_loo_null_mean": 0.1502983690725227,
+    "l1_generated_loo_mean_vs_observed_mean": 0.18868007023122335,
+    "composition_top1": 0.09090909090909091,
+    "mean_fraction_generated": {
+     "T cell": 0.704091,
+     "B cell": 0.082697,
+     "Monocyte": 0.114788,
+     "NK cell": 0.059152,
+     "DC": 0.028879,
+     "Other": 0.010394
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+    "mean_fraction_observed": {
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+     "B cell": 0.075565,
+     "Monocyte": 0.151798,
+     "NK cell": 0.094479,
+     "DC": 0.024449,
+     "Other": 0.005497
+    }
+   },
+   "pseudobulk": {
+    "n_genes": 5508,
+    "r_median": 0.9034703816824057,
+    "r_mean": 0.9026496172551858,
+    "top1": 0.09090909090909091,
+    "n_top1": 2,
+    "own_rank_median": 9.5,
+    "chance_top1": 0.045454545454545456
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+   "precision_coverage": {
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+    "coverage": 0.923939393939394,
+    "density": 2.9053939393939396,
+    "n_query": 3300,
+    "n_reference": 3300
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+   "precision_coverage_depth_matched": {
+    "precision": 0.9951515151515151,
+    "coverage": 0.990909090909091,
+    "density": 4.2953636363636365,
+    "detected_median_before": {
+     "R1": 356.0,
+     "Q": 275.0
+    },
+    "detected_median_after": {
+     "R1": 275.0,
+     "Q": 275.0
+    }
+   },
+   "monocyte_pct": {
+    "generated_mean_over_donors": 11.478787878787879,
+    "observed_mean_over_donors": 15.179849365920914,
+    "generated_pooled_cells": 11.478787878787879
+   },
+   "median_umi_per_cell_scoring_genes": {
+    "generated_pooled": 2650.0,
+    "observed_pooled": 1887.0,
+    "generated_mean_of_donor_medians": 2658.727294921875,
+    "observed_mean_of_donor_medians": 1946.340909090909
+   },
+   "seconds": 8.1
+  }
+ },
+ "code_sha256": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
+ },
+ "seconds": 10.1
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/5692849f89dd50a8/donor_deg_summary.csv

@@ -0,0 +1,26 @@
+arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
+lora,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,10,50,50
+lora,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
+lora,Monocyte,ok,ok,ok,57,20,55,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,26
+lora,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
+lora,DC,ok,ok,ok,53,20,35,19,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
+pairedcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
+pairedcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
+pairedcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
+pairedcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,18
+pairedcal,DC,ok,ok,ok,53,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
+scsemi,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,13
+scsemi,B cell,ok,ok,ok,57,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,50
+scsemi,Monocyte,ok,ok,ok,57,20,55,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,37
+scsemi,NK cell,ok,ok,ok,57,20,47,17,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
+scsemi,DC,ok,ok,ok,53,20,55,18,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
+raw,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
+raw,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,50
+raw,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
+raw,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
+raw,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
+refcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
+refcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
+refcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
+refcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
+refcal,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,33

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/971311c3bbda5713/ye2026_sepsis-disease-draw1-score.json

@@ -0,0 +1,143 @@
+{
+  "state": "completed",
+  "signature": "167e4606e50a1e5b20fa3dd336440f796612e0f187efa663f27f82eea7a1aa22",
+  "outputs": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1/score/summary.json",
+      "bytes": 55609,
+      "mtime_ns": 1791819488163825548,
+      "sha256": "166acaf4ca9da339dbc39a5fea6533c4a08d657668c9e23128220bc832696686"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1/statistics/status.json",
+      "bytes": 694,
+      "mtime_ns": 1791821124517451405,
+      "sha256": "f91e401aaf4c76a7b0f49f8b25121f8be63b40d3e5a553fa0f220358bd7a31d1"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1/statistics/donor_bootstrap_2000.csv",
+      "bytes": 13246,
+      "mtime_ns": 1791820940909309915,
+      "sha256": "4ed67ba3e2ec4752fd026cde46ab34557d45eeb5d14fbfdee07438cd02b1fd9e"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1/extras/ye2026_sepsis/strict/manifest.json",
+      "bytes": 4374,
+      "mtime_ns": 1791820854030348075,
+      "sha256": "e1e16b5f780a7a2ce2b892c0f7bb22cbf7619e5f14bca17459c799a52bb9d4e2"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1/contrast/ye2026_sepsis/strict/manifest.json",
+      "bytes": 18881,
+      "mtime_ns": 1791820940587348586,
+      "sha256": "fdb12f2696fcecc3d3409cf4f728e502d5e26098b5e56c3d96699777e7a3cf23"
+    }
+  ],
+  "seconds": 1747.6540726829999,
+  "at": "2026-10-12T16:05:24.756354+00:00",
+  "execution": {
+    "host": "spark-fa6b",
+    "map_host": null,
+    "map_path": null,
+    "map_sha256": null,
+    "argv": [
+      "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
+      "-u",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
+      "--support-manifest",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw1/support.json",
+      "--out",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1",
+      "--action",
+      "all",
+      "--threads",
+      "4",
+      "--arm",
+      "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/lora.npz",
+      "--arm",
+      "pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/pairedcal.npz",
+      "--arm",
+      "scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/scsemi.npz",
+      "--arm",
+      "raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
+      "--arm",
+      "refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
+    ],
+    "command": [
+      "systemd-run",
+      "--user",
+      "--wait",
+      "--collect",
+      "--pipe",
+      "--quiet",
+      "--unit=pbisc-strict-ye2026_sepsis-disease-draw1-score-44882-1791819377101672982",
+      "--slice=app.slice",
+      "--working-directory=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012",
+      "--expand-environment=no",
+      "-p",
+      "MemoryMax=32G",
+      "-p",
+      "MemorySwapMax=0",
+      "-p",
+      "OOMPolicy=kill",
+      "-p",
+      "OOMScoreAdjust=500",
+      "-p",
+      "CPUQuota=400%",
+      "/usr/bin/env",
+      "CUDA_VISIBLE_DEVICES=",
+      "PATH=/home/sj_server_1/.local/bin:/home/sj_server_1/miniforge3/bin:/usr/local/bin:/usr/bin:/bin",
+      "PYTHONDONTWRITEBYTECODE=1",
+      "PYTHONUNBUFFERED=1",
+      "OMP_NUM_THREADS=4",
+      "OPENBLAS_NUM_THREADS=4",
+      "MKL_NUM_THREADS=4",
+      "NUMBA_NUM_THREADS=4",
+      "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
+      "-u",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
+      "--support-manifest",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw1/support.json",
+      "--out",
+      "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1",
+      "--action",
+      "all",
+      "--threads",
+      "4",
+      "--arm",
+      "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/lora.npz",
+      "--arm",
+      "pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/pairedcal.npz",
+      "--arm",
+      "scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/scsemi.npz",
+      "--arm",
+      "raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
+      "--arm",
+      "refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
+    ]
+  },
+  "argv": [
+    "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
+    "-u",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
+    "--support-manifest",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw1/support.json",
+    "--out",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw1",
+    "--action",
+    "all",
+    "--threads",
+    "4",
+    "--arm",
+    "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/lora.npz",
+    "--arm",
+    "pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/pairedcal.npz",
+    "--arm",
+    "scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw1/scsemi.npz",
+    "--arm",
+    "raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
+    "--arm",
+    "refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
+  ],
+  "previous_outputs": null
+}