Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_zs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.29604768407578885,0.2629069247680719,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1747730555265414,0.0873865277632707,0.12376578117834525,0.12073672508411189,0.5376401616828995,0.01794475166399584,0.5741506164875818
+obs_thin_zs,BD,ifng_response_log2fc_high_vs_other,-0.9126063082654226,-0.9047301868874009,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.25756583548199363,0.12878291774099682,0.4272702141837159,-1.1599689840404086,-0.6809958752464799,-1.3224510290139135,-0.5027615875169316
+obs_thin_zs,BD,ifng_response_c1q_high_minus_other,0.11464317162503176,0.11490973649793035,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.016627618806596814,0.008313809403298407,0.010861957719973586,0.09402061168163134,0.13473260182263502,0.0881849196066718,0.14110142364339173
+obs_thin_zs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.09451151991238606,-0.08321063811348983,0.5,0.0,0.625,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.18055553758360718,0.09027776879180359,0.25534688178747567,-0.29938721381939076,0.08776241039682621,-0.3818156716531182,0.1927926318283461
+obs_thin_zs,BD,proinflammatory_log2fc_high_vs_other,-1.084431491489614,-1.0614038811109294,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.22606232531555503,0.11303116265777752,0.28576991755091086,-1.3611759205235263,-0.8537422832130713,-1.4441470974717798,-0.7247158855074483
+obs_thin_zs,BD,proinflammatory_c1q_high_minus_other,0.03369601662538289,0.029533750184846844,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.016824139767880365,0.008412069883940183,0.016757639574059298,0.018700393114860603,0.057016173016977256,0.006925055903449103,0.06046697734731667
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.16044747131880424,0.1515681537680412,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.06602174645921659,0.033010873229608294,0.09705034381382613,0.10142133033849245,0.23723224740064208,0.05539213977504846,0.26550280286256
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.8413065687642494,-0.8494811600819456,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.18526204525488052,0.09263102262744026,0.21880736661276312,-1.0471252112669756,-0.6191387436261309,-1.1360998244795981,-0.5465133130489006
+obs_thin_zs,BD,phagocytosis_antigen_c1q_high_minus_other,0.1279940289626461,0.12319918736005678,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.013596785044149273,0.0067983925220746365,0.009126589878493047,0.11761405901959393,0.14796368211087696,0.1063585097989013,0.14962954812639093
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.0551402434509094,1.1221806613884486,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.26669165764161396,0.13334582882080698,0.31024360313701926,0.6952315887817329,1.280968062245008,0.6307743031951385,1.4795061837066803
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.47452135479107865,0.6110950537732337,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.28477829399547666,0.14238914699773833,0.15962398979428438,0.0476893454909698,0.6282059661268773,0.02137554001562758,0.9276671695665297
+obs_thin_zs,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6997484639936837,0.6911606024728906,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.05870734123233254,0.02935367061616627,0.06865532618569647,0.6414713421661242,0.7752013088628293,0.6063319833947505,0.793164944592617
+obs_thin_zs,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.1258582254193909,0.14272873504959016,0.75,0.5,0.625,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.3233534001906184,0.1616767000953092,0.23356967953872204,-0.2855774631330945,0.5035528947114778,-0.388669191449388,0.6403856422881697
+obs_thin_zs,HC,ifng_response_log2fc_high_vs_other,-1.664384592593437,-1.5213269129043918,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,1.0850121739023373,0.5425060869511686,1.5986701607727065,-2.922401336924267,-0.6924832076406979,-3.3908810846051054,0.062111899418231475
+obs_thin_zs,HC,ifng_response_c1q_high_minus_other,0.11731563323293392,0.11233330912948916,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.0433263422767858,0.0216631711383929,0.036909679092358844,0.0702051399758985,0.17439077469685885,0.04837375428282678,0.18625751218304107
+obs_thin_zs,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.09772330509040408,-0.1361992276357202,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.11318298374207383,0.05659149187103692,0.06993562982891134,-0.18667415060522982,0.0681793855150539,-0.2778226893058785,0.08237607912507033
+obs_thin_zs,HC,proinflammatory_log2fc_high_vs_other,-1.5242445478655549,-1.3937938530547007,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.6143594204430407,0.30717971022152035,0.8040572233479415,-2.311658321606305,-0.9977321637465129,-2.501827481718152,-0.5466616140129574
+obs_thin_zs,HC,proinflammatory_c1q_high_minus_other,0.038156661705279454,0.03612752295299361,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.029442868387103943,0.014721434193551972,0.025123800630538026,0.004572707307242407,0.07579889360788819,-0.008693512152467255,0.08500683556302616
+obs_thin_zs,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.1293197184742341,0.18660895538594466,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1813807279694636,0.0906903639847318,0.15312907544146864,-0.1319863381921621,0.27604730131720917,-0.1592974953138103,0.41793693226227846
+obs_thin_zs,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.3174180425744266,-1.0615533561667165,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.9263497292161612,0.4631748646080806,1.0150230193802368,-2.5946571804214287,-0.5519082775428452,-2.7914471791466946,0.15661109399784112
+obs_thin_zs,HC,phagocytosis_antigen_c1q_high_minus_other,0.16779364446025982,0.168663738858438,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.03066114652527897,0.015330573262639485,0.05146984591737647,0.1389070516063478,0.1949400485178155,0.1190049182226916,0.21658237069782804
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.7001293147085004,0.8129979757347794,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3550879904259223,0.17754399521296116,0.2864802449257805,0.18682940997604855,0.9876918973883944,0.13510508311770386,1.2651535462992969
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.2132960136710751,-0.11103809609527765,0.5,0.0,0.875,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.7273510745946614,0.3636755372973307,0.7751456948121888,-1.1627355882965515,0.5316277258028065,-1.3706738836650325,0.9440818563228823
+obs_thin_zs,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7474580821634689,0.7101665136172651,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09819877832625323,0.04909938916312662,0.08830126573916419,0.6792947549924744,0.8902045464268706,0.5912019125295896,0.9037142517973481

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_C/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs_thin_zs,PBMC_BD_1,BD,real,489,21,0.04294478527607362,0.33704191010564527,0.2225881470641967,0.11445376304144858,0.18861535900745405,0.15429581242358711,0.03431954658386693,0.5379106458913705,0.4157375812684286,0.12217306462294192,0.5376401616828995,0.08776241039682621,0.23723224740064208,0.6952315887817329,-0.6997122288972452,-0.8537422832130713,-0.7749406602802443,0.0476893454909698,1.925707687822305,1.2842363456561807,0.6414713421661242,-0.9726310248230547
+obs_thin_zs,PBMC_BD_2,BD,real,946,43,0.045454545454545456,0.3201233989805699,0.22610278729893857,0.09402061168163134,0.15681017532435834,0.13810978220949774,0.018700393114860603,0.5365461020930321,0.41232079199586047,0.12422531009717164,0.24988031008230635,-0.18891695526910413,0.10142133033849245,1.0129743382076482,-0.6809958752464799,-0.9554628756287312,-0.6191387436261309,0.6014318306830286,1.8318750639043149,1.1641963511057711,0.6676787127985437,-0.7885618766369497
+obs_thin_zs,PBMC_BD_3,BD,real,735,15,0.02040816326530612,0.360065816571343,0.2447001066169309,0.11536570995441212,0.19258025019158398,0.16783229640575723,0.024747953785826754,0.5344602295917532,0.4168461705721593,0.11761405901959393,0.12073672508411189,-0.29938721381939076,0.193633230133567,1.2313869845692489,-1.1599689840404086,-1.3611759205235263,-0.9240216598836469,0.6207582768634388,1.8504322054476101,1.1357897133003727,0.7146424921472374,-1.0628023685738328
+obs_thin_zs,PBMC_BD_4,BD,real,1402,23,0.016405135520684736,0.32302980520994956,0.18829720338731454,0.13473260182263502,0.18548906162592457,0.12847288860894732,0.057016173016977256,0.49301028038666983,0.34504659827579287,0.14796368211087696,0.2759335394538375,0.02249567904212446,0.10950307740251537,1.280968062245008,-1.1097481448775568,-1.1673448865931275,-1.0471252112669756,0.6282059661268773,1.7644537359814605,0.9892524271186312,0.7752013088628293,-1.1701069176662857
+obs_thin_zs,PBMC_HC_1,HC,real,272,14,0.051470588235294115,0.3939148868790005,0.21952411218214166,0.17439077469685885,0.22776689072836206,0.15196799712047387,0.07579889360788819,0.6303518251375372,0.4367136884860928,0.19363813665144436,0.5035528947114778,-0.18667415060522982,0.22068939909536187,0.18682940997604855,-0.6924832076406979,-1.0767433971327052,-0.7253294937263227,-0.3454080069535105,1.78690961911437,1.1076148641218957,0.6792947549924744,-0.8479612968426056
+obs_thin_zs,PBMC_HC_2,HC,real,743,9,0.012113055181695828,0.3003675671980307,0.2301624272221322,0.0702051399758985,0.17327729247747362,0.1687045851702312,0.004572707307242407,0.5308789833114466,0.39197193170509875,0.1389070516063478,-0.2855774631330945,-0.14034739150161382,0.15252851167652745,0.8705077244499088,-2.2154539985389348,-1.7108443089766963,-1.3977772186071105,0.12333181476295518,1.8368181046482834,1.1503674696180617,0.6864506350302217,-1.3870140409953147
+obs_thin_zs,PBMC_HC_3,HC,real,1306,36,0.027565084226646247,0.3394794943267195,0.2199040049224845,0.11957548940423499,0.1670533478955151,0.13580399431277254,0.031249353582742556,0.5491792967893514,0.40548995572391977,0.14368934106543163,0.1669201284346428,-0.1320510637698266,0.27604730131720917,0.9876918973883944,-0.827199827269849,-0.9977321637465129,-0.5519082775428452,0.5316277258028065,1.9075846532277128,1.1737022610234042,0.7338823922043085,-0.87417689038926
+obs_thin_zs,PBMC_HC_4,HC,real,473,4,0.008456659619450317,0.2841041513448016,0.17901302249005827,0.10509112885474334,0.16566931462852466,0.12466362230528,0.041005692323244664,0.5568787063196361,0.3619386578018206,0.1949400485178155,0.1185373416645375,0.0681793855150539,-0.1319863381921621,0.7554882270196501,-2.922401336924267,-2.311658321606305,-2.5946571804214287,-1.1627355882965515,1.8960247997258048,1.0058202532989342,0.8902045464268706,-1.9065172543647086

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_D/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_zs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.19549150030335266,0.12768254504605203,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.17197452266396393,0.08598726133198197,0.1449290518276461,0.07911001757420236,0.4474908935471042,-0.07815834182407799,0.4691413424307833
+obs_thin_zs,BD,ifng_response_log2fc_high_vs_other,-0.6412413305746505,-0.5684326559871167,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.18459897054353067,0.09229948527176533,0.12251366449009005,-0.9147861402663239,-0.5133138700580446,-0.9349794864573681,-0.3475031746919329
+obs_thin_zs,BD,ifng_response_c1q_high_minus_other,0.0933647961778376,0.09221656203854427,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.016257003270296586,0.008128501635148293,0.018206835764862872,0.0755392621107745,0.11348679852348745,0.06749627618156734,0.11923331617410787
+obs_thin_zs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.06103546887716758,-0.08691196175939116,0.25,-0.5,0.375,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.13236840654550378,0.06618420327275189,0.18047636519958035,-0.17480519063346975,0.10448723864358177,-0.2716631420506827,0.14959220429634756
+obs_thin_zs,BD,proinflammatory_log2fc_high_vs_other,-0.7667773949237555,-0.7293387483122228,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.09242962517842243,0.046214812589211215,0.07125178830749956,-0.9032174450005427,-0.7052146380700337,-0.9138535544976697,-0.6197012353498413
+obs_thin_zs,BD,proinflammatory_c1q_high_minus_other,0.02459966478634512,0.01896030445717603,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.014165263235082857,0.007082631617541428,0.009768160153980465,0.014895492953082956,0.04558255727794547,0.0020595699634148312,0.04713975960927541
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.17491916718708855,0.1677207961030233,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.07306701912481284,0.03653350956240642,0.06423774347633332,0.09424625877995489,0.2699888177623528,0.058653234661161235,0.29118509971301587
+obs_thin_zs,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.5467431829905592,-0.5448279752177171,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.18782387554684013,0.09391193777342006,0.17052844875944834,-0.7755065408238698,-0.321810240702933,-0.8456128823796134,-0.24787348360150507
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_zs/rule_D/sample.csv

@@ -0,0 +1,9 @@
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