Datasets:

junidude14
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PBISC-data

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f1_20261008T134637.log ADDED Viewed

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+13:46:38 imperial_eskd: 25 scored donors, 1 arm(s); fitting the observed reference
+13:46:39 reference: R1 3750 cells, PCA var 0.309, R2 control P/C 0.9963/1.0000; contrast on
+13:46:39 observed top-50 DEG lists: T 50 (sig 283, 18+7 donors, 56777 cells), B 6 (sig 6, 18+7 donors, 5613 cells), Mono 50 (sig 177, 18+7 donors, 18012 cells), NK 50 (sig 61, 18+7 donors, 13189 cells), DC 50 (sig 51, 18+7 donors, 2764 cells)
+13:46:39 scsemi__raw: loading generated_counts (37500 cells in the NPZ, 37500 scored)
+13:46:42 scsemi__raw: Poisson read-out nnz 4884727 (whole NPZ), median library 1303; annotating
+13:46:46 scsemi__raw: L1 0.5011 (null 0.48729138790996585) P/C 0.6859/0.1312 pb r 0.6563 top1 0.160 mono 15.1% (7.0 s)
+13:46:46 scsemi__raw: top-50 DEG 20/206 (T 8, B 1, Mono 4, NK 6, DC 1); broadcast 38 (0.04 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+scsemi__raw   0.5011                0.4873     0.6859    0.1312        0.5771        0.252       0.6563     0.16       15.1147       19.4846          1303.0          1532.0                     0.6519                               0.2953                           0.5367                                     0.5099          8.0          1.0             4.0           6.0           1.0           20.0          206.0                 19.0                     38.0      7.0
+13:46:46 done in 8.5 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold1
+UNIT_EXIT 0

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+13:46:51 imperial_eskd: 29 scored donors, 1 arm(s); fitting the observed reference
+13:46:52 reference: R1 4313 cells, PCA var 0.267, R2 control P/C 0.9977/1.0000; contrast on
+13:46:52 observed top-50 DEG lists: T 0 (sig 0, 20+7 donors, 50424 cells), B 0 (sig 0, 20+7 donors, 13337 cells), Mono 3 (sig 3, 20+7 donors, 16292 cells), NK 0 (sig 0, 20+7 donors, 17212 cells), DC 0 (sig 0, 20+7 donors, 2774 cells)
+13:46:52 scsemi__raw: loading generated_counts (43500 cells in the NPZ, 43500 scored)
+13:46:56 scsemi__raw: Poisson read-out nnz 5788187 (whole NPZ), median library 1353; annotating
+13:47:00 scsemi__raw: L1 0.5366 (null 0.5549062891012635) P/C 0.7552/0.1426 pb r 0.6179 top1 0.034 mono 13.7% (7.9 s)
+13:47:00 scsemi__raw: top-50 DEG 0/3 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 1 (0.05 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+scsemi__raw   0.5366                0.5549     0.7552    0.1426        0.4684       0.1417       0.6179   0.0345       13.7195       14.9859          1353.0          1332.0                     0.5955                               0.2786                            0.638                                     0.5291          0.0          0.0             0.0           0.0           0.0            0.0            3.0                  0.0                      1.0      7.9
+13:47:00 done in 9.5 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold2
+UNIT_EXIT 0

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+13:47:04 imperial_eskd: 24 scored donors, 1 arm(s); fitting the observed reference
+13:47:05 reference: R1 3600 cells, PCA var 0.254, R2 control P/C 0.9958/1.0000; contrast on
+13:47:05 observed top-50 DEG lists: T 0 (sig 0, 15+7 donors, 54682 cells), B 0 (sig 0, 15+7 donors, 7674 cells), Mono 0 (sig 0, 15+7 donors, 9065 cells), NK 0 (sig 0, 15+7 donors, 12190 cells), DC 0 (sig 0, 15+7 donors, 2742 cells)
+13:47:05 scsemi__raw: loading generated_counts (36000 cells in the NPZ, 36000 scored)
+13:47:08 scsemi__raw: Poisson read-out nnz 4656205 (whole NPZ), median library 1350; annotating
+13:47:12 scsemi__raw: L1 0.3874 (null 0.43074713408214976) P/C 0.7753/0.1939 pb r 0.6047 top1 0.125 mono 11.3% (6.9 s)
+13:47:12 scsemi__raw: top-50 DEG 0/0 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.04 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+scsemi__raw   0.3874                0.4307     0.7753    0.1939        0.5394       0.1942       0.6047    0.125       11.3278        12.859          1350.0          1338.0                     0.4778                               0.1775                           0.5903                                     0.4264          0.0          0.0             0.0           0.0           0.0            0.0            0.0                  0.0                      0.0      6.9
+13:47:12 done in 8.3 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold3
+UNIT_EXIT 0

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+13:47:17 imperial_eskd: 32 scored donors, 1 arm(s); fitting the observed reference
+13:47:18 reference: R1 4782 cells, PCA var 0.259, R2 control P/C 0.9946/1.0000; contrast on
+13:47:18 observed top-50 DEG lists: T 1 (sig 1, 23+6 donors, 57287 cells), B 0 (sig 0, 23+6 donors, 9261 cells), Mono 0 (sig 0, 23+6 donors, 22138 cells), NK 0 (sig 0, 23+6 donors, 19381 cells), DC 0 (sig 0, 23+6 donors, 3153 cells)
+13:47:18 scsemi__raw: loading generated_counts (48000 cells in the NPZ, 48000 scored)
+13:47:22 scsemi__raw: Poisson read-out nnz 6427248 (whole NPZ), median library 1370; annotating
+13:47:27 scsemi__raw: L1 0.5673 (null 0.5173622362725593) P/C 0.6587/0.1836 pb r 0.6206 top1 0.062 mono 15.2% (8.3 s)
+13:47:27 scsemi__raw: top-50 DEG 0/1 (T 0, B 0, Mono 0, NK 0, DC 0); broadcast 0 (0.05 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+scsemi__raw   0.5673                0.5174     0.6587    0.1836        0.5824       0.2367       0.6206   0.0625        15.225       16.8834          1370.0          1288.0                     0.2856                               0.0969                           0.3653                                     0.3294          0.0          0.0             0.0           0.0           0.0            0.0            1.0                  0.0                      0.0      8.3
+13:47:27 done in 10.1 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold4
+UNIT_EXIT 0