Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot2.log

@@ -0,0 +1,191 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 19656 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>49689 DEG expressed across 6 samples were identified
+>Group size: 496, Kappa: 23.5800000287385
+>Best kappa: 23.5800000287385 
+>SVD UpperRightDiag: 110120
+>SVD LowerRightDiag: 4670.04
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.185215 0.0117177 0.601768 0.0915209 0.0370983 0.0726805 9999 0.704225
+2 0.192642 0 0.481965 0.219813 0.033539 0.072041 9999 1.40845
+3 0.154367 0 0.174116 0 0.0817163 0.589801 9999 2.11268
+4 0.20926 0 0.321914 0 0.148052 0.320775 9999 2.8169
+5 0.133506 0 0.469356 0 0.188298 0.208839 9999 3.52113
+6 0.0965382 0.248737 0.179323 0.112528 0.0598666 0.303007 9999 4.22535
+7 0.143381 0.0847765 0.1226 0.0299973 0.0268237 0.592422 9999 4.92958
+8 0.070229 0.189905 0.217116 0.0571743 0.0432406 0.422335 9999 5.6338
+9 0.0424047 0.16998 0.176474 0.013919 0.0512577 0.545965 9999 6.33803
+10 0 0.045193 0.425943 0.410767 0.0612262 0.056871 9999 7.04225
+11 0.0127205 0 0.479351 0.445768 0.0621599 0 9999 7.74648
+12 0.013406 0 0.405694 0.457738 0.0893822 0.03378 9999 8.4507
+13 0.0248668 0.194445 0.450379 0 0.0758244 0.254485 9999 9.15493
+14 0 0.357979 0.283819 0 0.0304883 0.327713 9999 9.85915
+15 0 0.313781 0.213641 0.0294303 0.0235185 0.419629 9999 10.5634
+16 0.0956651 0.0532265 0.347007 0.0481893 0.0476666 0.408245 9999 11.2676
+17 0.129751 0.05381 0.245266 0.0571237 0.0622551 0.451794 9999 11.9718
+18 0.0614974 0.126514 0.259805 0.0679519 0.0566651 0.427566 9999 12.6761
+19 0.108986 0.0400498 0.452556 0.0690969 0.0497341 0.279577 9999 13.3803
+20 0.143058 0.0195625 0.299629 0.165873 0.0919968 0.279881 9999 14.0845
+21 0.086544 0.0426666 0.481374 0.0769584 0.0792756 0.233181 9999 14.7887
+22 0.13903 0 0.293321 0 0.0410411 0.526607 9999 15.493
+23 0.0909983 0.0124233 0.296552 0 0.0374262 0.5626 9999 16.1972
+24 0.086658 0.113356 0.306526 0.0237227 0.00403487 0.465703 9999 16.9014
+25 0.0426814 0.0397212 0.387487 0.270297 0.0527372 0.207076 9999 17.6056
+26 0.0148078 0.0356532 0.523111 0.0949816 0.0890668 0.242379 9999 18.3099
+27 0.0331576 0.0888953 0.349993 0.117509 0.109345 0.301099 9999 19.0141
+28 0.036553 0.143721 0.285567 0.108183 0.0577754 0.368201 9999 19.7183
+29 0.00873494 0.13518 0.215402 0.18247 0.0645738 0.393639 9999 20.4225
+30 0.00732363 0.177075 0.297597 0.0514219 0.0501016 0.41648 9999 21.1268
+31 0.0850577 0 0.411219 0.107496 0.0998795 0.296348 9999 21.831
+32 0.0868381 0 0.279196 0.0826787 0.0837151 0.467573 9999 22.5352
+33 0.115709 0.0450787 0.247541 0.0444184 0.0843607 0.462892 9999 23.2394
+34 0.101324 0 0.474699 0.260608 0.0517499 0.111619 9999 23.9437
+35 0.128271 0 0.565324 0.157527 0.0514437 0.0974342 9999 24.6479
+36 0.143586 0 0.311265 0.182559 0.170274 0.192316 9999 25.3521
+37 0.00960736 0.12096 0.359546 0.0776508 0.0522991 0.379936 9999 26.0563
+38 0.0453152 0 0.416381 0.0157432 0.0501487 0.472412 9999 26.7606
+39 0.0685147 0.133871 0.454027 0.166859 0.0188748 0.157854 9999 27.4648
+40 0.00996971 0.1829 0.331815 0.205163 0.0788779 0.191274 9999 28.169
+41 0.00705598 0.200933 0.253939 0.199022 0.0430991 0.295951 9999 28.8732
+42 0.0975246 0.167554 0.205954 0.187543 0.0745001 0.266924 9999 29.5775
+43 0.023296 0.313682 0.172635 0.241365 0.0576446 0.191377 9999 30.2817
+44 0.0408116 0.0749019 0.260614 0.149001 0.0291202 0.445551 9999 30.9859
+45 0.00110177 0.162719 0.138482 0.0646895 0.0551181 0.577889 9999 31.6901
+46 0.0108038 0.191374 0.444766 0.178928 0.0564336 0.117694 9999 32.3944
+47 0.0522016 0.0189771 0.448209 0.202908 0.0633005 0.214404 9999 33.0986
+48 0.0540353 0 0.442438 0.151368 0.150783 0.201376 9999 33.8028
+49 0.106753 0 0.692002 0 0.0679941 0.133251 9999 34.507
+50 0.0915189 0 0.318154 0.279895 0.260316 0.0501158 9999 35.2113
+51 0.0195861 0 0.451988 0.164247 0.364179 0 9999 35.9155
+52 0.0709492 0 0.658044 0.0733669 0.121537 0.0761028 9999 36.6197
+53 0.133964 0 0.477228 0.15833 0.1374 0.0930783 9999 37.3239
+54 0.121204 0.0124522 0.348457 0.200342 0.195367 0.122178 9999 38.0282
+55 0.0608996 0.052998 0.288196 0.167747 0.136851 0.293309 9999 38.7324
+56 0.112617 0.134897 0.234182 0.0852296 0.0628781 0.370195 9999 39.4366
+57 0.117974 0.11392 0.208936 0.0767219 0.0700314 0.412417 9999 40.1408
+58 0.0779508 0.223667 0.126934 0.140525 0.0601391 0.370784 9999 40.8451
+59 0.108678 0 0.385503 0.197534 0.132284 0.176 9999 41.5493
+60 0.0953668 0.0533766 0.261239 0.33628 0.0560761 0.197661 9999 42.2535
+61 0.0503485 0.0667794 0.238721 0.302048 0.0314741 0.310629 9999 42.9577
+62 0.0589621 0.0543709 0.40357 0.163621 0.00656213 0.312913 9999 43.662
+63 0.124926 0 0.382315 0.191199 0.0153032 0.286257 9999 44.3662
+64 0.0605274 0.189894 0.224446 0.0961492 0 0.428984 9999 45.0704
+65 0.166626 0.0604879 0.134717 0.136572 0 0.501597 9999 45.7746
+66 0.119915 0.125636 0.160919 0.208276 0.0143437 0.370911 9999 46.4789
+67 0.198279 0.0414402 0.136298 0.0381843 0.00972818 0.576069 9999 47.1831
+68 0.097126 0.162977 0.280368 0.137008 0.0150006 0.307521 9999 47.8873
+69 0.0989163 0.129502 0.373557 0.0624017 0.10477 0.230852 9999 48.5915
+70 0.0207741 0.189279 0.334792 0.188957 0.0361258 0.230073 9999 49.2958
+71 0.0130177 0.00939411 0.553077 0.218957 0.12245 0.083104 9999 50
+72 0.0353375 0 0.808172 0.0697556 0.0865386 0.000196294 9999 50.7042
+73 0.12102 0 0.606236 0.0979602 0.0989597 0.0758237 9999 51.4085
+74 0.0495202 0 0.689117 0.040559 0.12738 0.093423 9999 52.1127
+75 0.312392 0.117488 0.128603 0.0336334 0.0187554 0.389128 9999 52.8169
+76 0.175378 0.15047 0.446733 0.0943033 0.0167354 0.116381 9999 53.5211
+77 0.262522 0.155318 0.32445 0.167132 0.00281265 0.0877659 9999 54.2254
+78 0.200243 0.148338 0.211789 0.117054 0.00740874 0.315167 9999 54.9296
+79 0.240062 0.0416778 0.133795 0.142199 0.0561364 0.38613 9999 55.6338
+80 0.241336 0.174809 0.260305 0.113608 0.0117874 0.198154 9999 56.338
+81 0.235373 0.139583 0.221891 0.110452 0.0106835 0.282017 9999 57.0423
+82 0.193845 0.143764 0.237094 0.0497915 0.0372894 0.338217 9999 57.7465
+83 0.0103126 0.00455493 0.601613 0.0748953 0.230528 0.0780956 9999 58.4507
+84 0.022695 0 0.492262 0.0517307 0.337446 0.0958663 9999 59.1549
+85 0.094497 0.0164704 0.550328 0.0462619 0.144779 0.147664 9999 59.8592
+86 0.0484495 0.0424189 0.387406 0.0899889 0.119227 0.31251 9999 60.5634
+87 0.0439603 0.190758 0.122624 0.25539 0.0252799 0.361988 9999 61.2676
+88 0.111324 0.165489 0.13353 0.0784804 0.0371326 0.474044 9999 61.9718
+89 0.0866415 0.052322 0.379047 0.255352 0.0993422 0.127295 9999 62.6761
+90 0.124074 0 0.277266 0.286228 0.171592 0.14084 9999 63.3803
+91 0.185537 0 0.437503 0.160379 0.152514 0.0640678 9999 64.0845
+92 0.190665 0.0879468 0.38298 0.0967059 0.118437 0.123265 9999 64.7887
+93 0.139598 0.0845336 0.38222 0.132324 0.0491747 0.21215 9999 65.493
+94 0.0422561 0.120231 0.210534 0.21688 0.0327887 0.377311 9999 66.1972
+95 0.0130229 0.0326128 0.435734 0.302098 0.0263947 0.190138 9999 66.9014
+96 0.00574495 0.0640603 0.315735 0.31186 0.0126056 0.289995 9999 67.6056
+97 0.0310228 0 0.537531 0.205075 0.0542364 0.172136 9999 68.3099
+98 0.0352967 0.0124711 0.42395 0.226908 0.0793092 0.222065 9999 69.0141
+99 0.116131 0 0.586059 0.139846 0.0567764 0.101188 9999 69.7183
+100 0.166461 0 0.637774 0.0145982 0.0312504 0.149917 9999 70.4225
+101 0.0402946 0.0864387 0.222581 0.169508 0.0869565 0.394221 9999 71.1268
+102 0.0816696 0.168716 0.217391 0.0750293 0.0498005 0.407393 9999 71.831
+103 0.0389384 0.0165761 0.574897 0.169322 0.0947119 0.105554 9999 72.5352
+104 0.0398072 0.110101 0.393044 0.141639 0.11737 0.198039 9999 73.2394
+105 0.0208569 0.0606515 0.0312282 0.380843 0 0.50642 9999 73.9437
+106 0.0612466 0 0.751979 0 0.0185131 0.168261 9999 74.6479
+107 0.0546537 0.0308649 0.156068 0.287558 0.0170223 0.453833 9999 75.3521
+108 0.121877 0.226153 0.2066 0.172272 0.0079381 0.265159 9999 76.0563
+109 0.113391 0.154601 0.327468 0.129779 0.0369942 0.237767 9999 76.7606
+110 0.0915853 0.126029 0.342238 0.274969 0.00832337 0.156856 9999 77.4648
+111 0.182112 0.0774008 0.44094 0.139765 0.0340311 0.125752 9999 78.169
+112 0.178644 0.149352 0.291906 0.123706 0.0373691 0.219023 9999 78.8732
+113 0.057761 0.195719 0.343343 0.214462 0.0482946 0.14042 9999 79.5775
+114 0.0239886 0.154697 0.244261 0.1462 0.106648 0.324206 9999 80.2817
+115 0.0592911 0.0763117 0.29272 0.158326 0.0416224 0.371729 9999 80.9859
+116 0.0841667 0.042242 0.219749 0.34771 0.0496148 0.256518 9999 81.6901
+117 0.0833747 0.094117 0.143085 0.241071 0.10404 0.334312 9999 82.3944
+118 0.0990791 0.0620201 0.12194 0.233028 0.166238 0.317694 9999 83.0986
+119 0.0101961 0.166259 0.139493 0.25561 0 0.428443 9999 83.8028
+120 0.0355933 0.0719963 0.243664 0.343388 0.0185686 0.28679 9999 84.507
+121 0.139234 0.0537761 0.11456 0.245847 0.0394102 0.407173 9999 85.2113
+122 0.0971612 0.0663052 0.107098 0.311269 0.0709292 0.347237 9999 85.9155
+123 0.000562843 0.114365 0.0858169 0.30773 0.0476154 0.443911 9999 86.6197
+124 0.0664996 0.133711 0.576095 0.103413 0.0715562 0.0487256 9999 87.3239
+125 0.219895 0.100305 0.527907 0.0698143 0.050706 0.031372 9999 88.0282
+126 0.374218 0.0229476 0.25202 0.0874596 0.0490826 0.214273 9999 88.7324
+127 0.566895 0 0.204959 0.0615312 0.0525475 0.114068 9999 89.4366
+128 0.390326 0.0432978 0.284708 0.117993 0.0702035 0.093472 9999 90.1408
+129 0.289115 0.0801225 0.385407 0.0856434 0.0609272 0.0987849 9999 90.8451
+130 0.249716 0.0334624 0.431032 0.0820452 0.0811512 0.122593 9999 91.5493
+131 0.229062 0.064562 0.446151 0.0417922 0.0811507 0.137282 9999 92.2535
+132 0.0552588 0.188316 0.301317 0.113617 0.0501502 0.291341 9999 92.9577
+133 0.0308115 0.155855 0.102686 0.31628 0.0191679 0.375199 9999 93.662
+134 0.0351244 0.05733 0.359502 0.139301 0.0545404 0.354203 9999 94.3662
+135 0.0562671 0.251788 0.194908 0.118566 0.0333718 0.345099 9999 95.0704
+136 0.0645736 0.147315 0.215294 0.0511158 0.070518 0.451184 9999 95.7746
+137 0.013711 0.171016 0.245267 0.1801 0.0532097 0.336697 9999 96.4789
+138 0.0394656 0.110224 0.375829 0.189709 0.0549666 0.229806 9999 97.1831
+139 0.0229709 0.0881049 0.298922 0.0181511 0.0426982 0.529153 9999 97.8873
+140 0.0140083 0.129074 0.285928 0.153347 0.0150653 0.402578 9999 98.5915
+141 0.00564523 0.120957 0.154976 0.108471 0.0117319 0.598218 9999 99.2958
+142 0.0873778 0.170382 0.151628 0 0.0242565 0.566355 9999 100

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot3.log

@@ -0,0 +1,194 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 19656 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>51359 DEG expressed across 6 samples were identified
+>Group size: 496, Kappa: 9.29421809349584
+>Best kappa: 9.29421809349584 
+>SVD UpperRightDiag: 46513.4
+>SVD LowerRightDiag: 5004.56
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.118925 0.0565716 0.589665 0.113265 0.0246633 0.09691 9999 0.689655
+2 0.0991112 0.00723543 0.528262 0.246048 0.0228456 0.0964973 9999 1.37931
+3 0.0474866 0.0361636 0.146005 0 0.0491583 0.721186 9999 2.06897
+4 0 0.0106725 0.348363 0 0.123578 0.517387 9999 2.75862
+5 0.0283468 0.00134061 0.500257 0 0.125451 0.344605 9999 3.44828
+6 0.00756829 0.241582 0.230023 0.120723 0.0332846 0.366818 9999 4.13793
+7 0 0.0890169 0.425809 0.378753 0.0416781 0.0647426 9999 4.82759
+8 0 0 0.506146 0.424905 0.0394769 0.0294724 9999 5.51724
+9 0 0.0168479 0.426211 0.421817 0.0791341 0.0559901 9999 6.2069
+10 0 0.25612 0.4156 0 0.0327587 0.295521 9999 6.89655
+11 0 0.320632 0.277249 0 0.0094243 0.392695 9999 7.58621
+12 0 0.338924 0.211284 0.0261645 0.000109704 0.423518 9999 8.27586
+13 0 0.119197 0.363003 0.0230311 0.0254485 0.46932 9999 8.96552
+14 0 0.0848823 0.272348 0.0323178 0.043207 0.567245 9999 9.65517
+15 0 0.162152 0.266064 0.0480365 0.0214601 0.502288 9999 10.3448
+16 0.0348482 0 0.276829 0.0192014 0.0197078 0.649414 9999 11.0345
+17 0.0192355 0.0511904 0.23856 0 0.0162618 0.674752 9999 11.7241
+18 0.0569338 0.100317 0.29375 0 0 0.548998 9999 12.4138
+19 0 0.10782 0.345363 0.235177 0.0258273 0.285814 9999 13.1034
+20 0 0.0628567 0.520847 0.11299 0.0619072 0.241399 9999 13.7931
+21 0 0.132008 0.357611 0.120164 0.0699417 0.320275 9999 14.4828
+22 0 0.179322 0.283805 0.0802817 0.0303485 0.426243 9999 15.1724
+23 0 0.142496 0.273208 0.185081 0.0375884 0.361625 9999 15.8621
+24 0 0.166699 0.329789 0.0955531 0.0259859 0.381973 9999 16.5517
+25 0 0 0.269142 0.0895616 0.0198344 0.621462 9999 17.2414
+26 0.0358156 0 0.414176 0.0811962 0.0598455 0.408967 9999 17.931
+27 0.0248515 0 0.255677 0.00768988 0.0293201 0.682462 9999 18.6207
+28 0.0805927 0.0496293 0.237603 0.0349394 0.054343 0.542892 9999 19.3103
+29 0.0226146 0 0.523191 0.27182 0.0354785 0.146896 9999 20
+30 0.012947 0 0.625151 0.180311 0.044869 0.136722 9999 20.6897
+31 0 0 0.330709 0.192226 0.149563 0.327502 9999 21.3793
+32 0 0.120035 0.426351 0.0744305 0.0182059 0.360978 9999 22.069
+33 0.0125037 0 0.442096 0.0441464 0.0230124 0.478241 9999 22.7586
+34 0 0.10416 0.437586 0.0872316 0.0524708 0.318551 9999 23.4483
+35 0.00401875 0.204201 0.41994 0.180043 0.0053686 0.186429 9999 24.1379
+36 0 0.233514 0.358328 0.196483 0.052443 0.159232 9999 24.8276
+37 0 0.20744 0.279376 0.222088 0.0188937 0.272203 9999 25.5172
+38 0 0.0229485 0.531267 0.143138 0.0978504 0.204796 9999 26.2069
+39 0 0 0.658851 0.0914145 0.0600224 0.189712 9999 26.8966
+40 0.00037762 0.000747619 0.493871 0.0215365 0.133305 0.350163 9999 27.5862
+41 0.00637999 0 0.495947 0.0104339 0.135985 0.351254 9999 28.2759
+42 0.0285693 0.0103785 0.493451 0.0800687 0.0499597 0.337572 9999 28.9655
+43 0.0319243 0 0.544328 0.0776624 0.0987056 0.247379 9999 29.6552
+44 0.0862466 0.16857 0.245109 0.208066 0.0507735 0.241235 9999 30.3448
+45 0 0.305449 0.228078 0.233054 0.0283697 0.205049 9999 31.0345
+46 0 0.0794506 0.274185 0.160985 0.00831158 0.477067 9999 31.7241
+47 0.0554637 0 0.691473 0 0.0379598 0.215103 9999 32.4138
+48 0.0180584 0 0.36091 0.283888 0.232355 0.104788 9999 33.1034
+49 0 0.000636674 0.542874 0.153508 0.281367 0.0216138 9999 33.7931
+50 0.00205456 0 0.694461 0.100232 0.104305 0.0989482 9999 34.4828
+51 0.0426968 0 0.50641 0.177728 0.121588 0.151576 9999 35.1724
+52 0.0344437 0.0745409 0.34715 0.224757 0.155222 0.163886 9999 35.8621
+53 0.00606381 0.0796272 0.292162 0.204559 0.100031 0.317556 9999 36.5517
+54 0.0733922 0.159647 0.23894 0.0809284 0.0320955 0.414997 9999 37.2414
+55 0.0145554 0.121129 0.199111 0.0191291 0.0465319 0.599543 9999 37.931
+56 0.0491459 0.232221 0.143597 0.123784 0.0271582 0.424094 9999 38.6207
+57 0 0 0.442995 0.200137 0.106287 0.250581 9999 39.3103
+58 0.0228998 0.0684056 0.268121 0.306424 0.0332525 0.300897 9999 40
+59 0.0119675 0.0854156 0.249315 0.321928 0.016135 0.315239 9999 40.6897
+60 0.0335952 0.0605397 0.399251 0.195821 0 0.310793 9999 41.3793
+61 0 0.0664176 0.41919 0.187268 0.00997914 0.317145 9999 42.069
+62 0 0.211708 0.249185 0.10921 0 0.429896 9999 42.7586
+63 0.0815837 0.0935974 0.123031 0.104979 0 0.596809 9999 43.4483
+64 0.0946369 0.129594 0.159578 0.178416 0.00860505 0.42917 9999 44.1379
+65 0.15369 0.0525269 0.128918 0.096776 0.000618857 0.567471 9999 44.8276
+66 0.0667364 0.157297 0.320715 0.0943135 0.00170745 0.359231 9999 45.5172
+67 0.0758884 0.130569 0.392959 0.07313 0.0691308 0.258323 9999 46.2069
+68 0 0.226818 0.318482 0.186651 0.0183932 0.249655 9999 46.8966
+69 0 0.0451828 0.517206 0.239756 0.0838892 0.113966 9999 47.5862
+70 0.00560229 0 0.836332 0.0901229 0.0576207 0.010322 9999 48.2759
+71 0.0338942 0.0423368 0.664837 0.0920661 0.0623703 0.104495 9999 48.9655
+72 0.0138576 0.00659404 0.73751 0.0431854 0.0788958 0.119957 9999 49.6552
+73 0.237607 0.122593 0.127805 0.035561 0.000367342 0.476067 9999 50.3448
+74 0.142862 0.1149 0.495661 0.0830516 0.0034768 0.160049 9999 51.0345
+75 0.220507 0.134765 0.350831 0.1296 0.000230955 0.164066 9999 51.7241
+76 0.162277 0.136603 0.213524 0.0953941 0 0.392202 9999 52.4138
+77 0.180596 0.0565736 0.114384 0.121565 0.0323912 0.49449 9999 53.1034
+78 0.171444 0.175498 0.263443 0.0821459 0 0.307469 9999 53.7931
+79 0.139764 0.166444 0.225717 0.0690281 0.00160046 0.397447 9999 54.4828
+80 0.158179 0.147444 0.241982 0.0512952 0.0136664 0.387434 9999 55.1724
+81 0 0.0122352 0.633614 0.0857055 0.1743 0.0941462 9999 55.8621
+82 0 0 0.507001 0.0665688 0.304496 0.121935 9999 56.5517
+83 0.00833661 0.0650684 0.547561 0.0582782 0.112073 0.208683 9999 57.2414
+84 0 0.0764465 0.416424 0.0793071 0.0704896 0.357333 9999 57.931
+85 0.0276551 0.185498 0.156163 0.268537 0.00579728 0.356349 9999 58.6207
+86 0.0951693 0.155752 0.152603 0.0744334 0.0182624 0.50378 9999 59.3103
+87 0.0472035 0.0427602 0.395984 0.230366 0.0626981 0.220989 9999 60
+88 0.027257 0 0.324314 0.299785 0.147368 0.201275 9999 60.6897
+89 0.12667 0 0.439105 0.193203 0.123556 0.117466 9999 61.3793
+90 0.103608 0.122875 0.423228 0.11922 0.0850328 0.146037 9999 62.069
+91 0.104872 0.0727709 0.432602 0.144137 0.0278715 0.217746 9999 62.7586
+92 0 0.160176 0.187481 0.197603 0.014576 0.440165 9999 63.4483
+93 0 0.0595815 0.418675 0.259683 0.0136383 0.248422 9999 64.1379
+94 0 0.0859903 0.307561 0.293925 0.00597447 0.30655 9999 64.8276
+95 0.00896749 0.027176 0.527961 0.201609 0.0347336 0.199553 9999 65.5172
+96 0 0.0455811 0.414991 0.228577 0.0545128 0.256338 9999 66.2069
+97 0.038262 0 0.632088 0.163787 0.03525 0.130613 9999 66.8966
+98 0.0608824 0.0162941 0.695959 0.0285666 0.0114863 0.186812 9999 67.5862
+99 0.0200645 0.0949048 0.225567 0.176748 0.047834 0.434882 9999 68.2759
+100 0.0744905 0.156766 0.221395 0.0865999 0.0247436 0.436005 9999 68.9655
+101 0.017605 0.0490997 0.560985 0.197182 0.0610203 0.114108 9999 69.6552
+102 0.0078414 0.130595 0.383378 0.137936 0.0921662 0.248084 9999 70.3448
+103 0 0.0693037 0.0362221 0.47892 0 0.415554 9999 71.0345
+104 0.0402839 0 0.767889 0 0.00689645 0.184931 9999 71.7241
+105 0 0.19705 0.158262 0.193268 0 0.45142 9999 72.4138
+106 0.00748713 0.0633696 0.150881 0.333043 0.00830225 0.436917 9999 73.1034
+107 0.0732672 0.191641 0.246584 0.143451 0 0.345057 9999 73.7931
+108 0.105391 0.124756 0.345791 0.153483 0.019268 0.251312 9999 74.4828
+109 0.0569366 0.153332 0.343672 0.231601 0 0.214458 9999 75.1724
+110 0.0606824 0.125304 0.448165 0.133207 0.0178467 0.214794 9999 75.8621
+111 0.0824066 0.161413 0.352359 0.107295 0.0184112 0.278114 9999 76.5517
+112 0.0658886 0.132378 0.375014 0.194509 0.0313581 0.200853 9999 77.2414
+113 0 0.160648 0.271672 0.179478 0.0712206 0.316981 9999 77.931
+114 0.0461271 0.0801142 0.30811 0.205603 0.0317458 0.328299 9999 78.6207
+115 0.0308365 0.0741077 0.2214 0.343376 0.035899 0.294381 9999 79.3103
+116 0.00109987 0.132365 0.159964 0.252018 0.0829786 0.371575 9999 80
+117 0.0288587 0.0926697 0.132168 0.206492 0.122745 0.417066 9999 80.6897
+118 0.0134602 0.142334 0.181924 0.289795 0 0.372487 9999 81.3793
+119 0 0.107348 0.237387 0.343968 0.00576566 0.305531 9999 82.069
+120 0.0470343 0.106317 0.112312 0.266678 0.0269884 0.44067 9999 82.7586
+121 0.0237572 0.113108 0.108887 0.322751 0.0442948 0.387202 9999 83.4483
+122 0 0.103371 0.126704 0.320522 0.0264752 0.422928 9999 84.1379
+123 0 0.104873 0.422431 0.226883 0.0460503 0.199764 9999 84.8276
+124 0.00766975 0 0.633869 0.201336 0.0362405 0.120884 9999 85.5172
+125 0.00529366 0.0145056 0.671656 0.204548 0.0382939 0.0657032 9999 86.2069
+126 0.0209962 0.0758293 0.592813 0.166529 0.0917053 0.0521271 9999 86.8966
+127 0.00601101 0.0621314 0.539656 0.206408 0.070571 0.115222 9999 87.5862
+128 0 0.135169 0.382635 0.123745 0.0949136 0.263537 9999 88.2759
+129 0.0350477 0.14519 0.619448 0.0974663 0.0430233 0.059825 9999 88.9655
+130 0.14964 0.102101 0.575962 0.0667306 0.029537 0.0760295 9999 89.6552
+131 0.259109 0.0707908 0.275286 0.112955 0.0285677 0.253292 9999 90.3448
+132 0.374331 0.0541184 0.232892 0.0688825 0.0474837 0.222292 9999 91.0345
+133 0.255643 0.0746942 0.307133 0.0903554 0.0403609 0.231813 9999 91.7241
+134 0.194409 0.119804 0.406238 0.0698762 0.0356701 0.174002 9999 92.4138
+135 0.15995 0.069637 0.465521 0.0832143 0.0532 0.168478 9999 93.1034
+136 0.143564 0.11054 0.484473 0.0317645 0.0465762 0.183083 9999 93.7931
+137 0 0.241545 0.331123 0.0757221 0.0244993 0.32711 9999 94.4828
+138 0 0.191673 0.104825 0.345589 0.0107198 0.347193 9999 95.1724
+139 0.00940117 0.0506997 0.388808 0.161699 0.0228993 0.366493 9999 95.8621
+140 0.0193753 0.230002 0.230291 0.0848784 0.0181594 0.417294 9999 96.5517
+141 0 0.166871 0.227012 0.0386806 0.0441229 0.523313 9999 97.2414
+142 0 0.187125 0.252158 0.150044 0.0277496 0.382923 9999 97.931
+143 0.0681001 0.0681962 0.362137 0.204638 0.0328196 0.26411 9999 98.6207
+144 0 0.116435 0.331929 0.0152312 0.0102125 0.526192 9999 99.3103
+145 0 0.144184 0.133876 0.113398 0 0.608542 9999 100

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_imperial_eskd_fewshot4.log

@@ -0,0 +1,192 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 19656 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>49194 DEG expressed across 6 samples were identified
+>Group size: 467, Kappa: 15.6425011742668
+>Best kappa: 15.6425011742668 
+>SVD UpperRightDiag: 64412.5
+>SVD LowerRightDiag: 4117.79
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.145835 0.00575728 0.66141 0.0928315 0.0220526 0.0721131 9999 0.699301
+2 0.121303 0 0.571691 0.202438 0.0149516 0.0896163 9999 1.3986
+3 0.0871589 0 0.199746 0 0.0484292 0.664666 9999 2.0979
+4 0.0689619 0 0.367839 0 0.110215 0.452984 9999 2.7972
+5 0.0681113 0 0.549725 0 0.11252 0.269643 9999 3.4965
+6 0.0444646 0.269229 0.26196 0.100131 0.0324556 0.291759 9999 4.1958
+7 0.0971285 0.10537 0.139551 0 0 0.65795 9999 4.8951
+8 0.0467795 0.200207 0.282898 0 0.0146354 0.45548 9999 5.59441
+9 0.0434651 0.181783 0.206753 0 0.0145541 0.553444 9999 6.29371
+10 0 0.23202 0.479651 0 0.0255697 0.262759 9999 6.99301
+11 0 0.358484 0.341407 0 0 0.300109 9999 7.69231
+12 0 0.321316 0.266724 0 0 0.41196 9999 8.39161
+13 0.0838089 0.0426746 0.513451 0.0913672 0.0201919 0.248506 9999 9.09091
+14 0 0.0822573 0.359068 0.161031 0.0527294 0.344915 9999 9.79021
+15 0.0516493 0.0707479 0.550252 0.0403567 0.0313944 0.2556 9999 10.4895
+16 0.104505 0 0.310351 0 0.0176973 0.567447 9999 11.1888
+17 0.143099 0 0.322287 0 0.0254272 0.509187 9999 11.8881
+18 0.140068 0.0314158 0.348953 0 0 0.479563 9999 12.5874
+19 0 0.0834794 0.403671 0.223001 0.0227621 0.267086 9999 13.2867
+20 0 0.0500171 0.594299 0.0469516 0.0411125 0.26762 9999 13.986
+21 0 0.143821 0.392206 0.078865 0.0608344 0.324274 9999 14.6853
+22 0 0.163104 0.331356 0.0365429 0.0222975 0.446699 9999 15.3846
+23 0 0.139316 0.291421 0.129959 0.0336354 0.405669 9999 16.0839
+24 0.00279684 0.188089 0.348426 0.0357786 0.0220877 0.402822 9999 16.7832
+25 0 0 0.328162 0.0391753 0.0122433 0.620419 9999 17.4825
+26 0.0802198 0 0.457031 0.060131 0.0492896 0.353329 9999 18.1818
+27 0.083908 0 0.296004 0 0.0360929 0.583995 9999 18.8811
+28 0.135506 0.0557283 0.272502 0.00942169 0.0445437 0.482299 9999 19.5804
+29 0.0608079 0 0.528116 0.281293 0.03104 0.0987425 9999 20.2797
+30 0.0402399 0 0.635253 0.175926 0.0337534 0.114827 9999 20.979
+31 0.0211716 0 0.389418 0.174827 0.134447 0.280137 9999 21.6783
+32 0.00457672 0.113604 0.434639 0.0213641 0.015266 0.41055 9999 22.3776
+33 0.0363054 0 0.470911 0 0.0148716 0.477912 9999 23.0769
+34 0 0.104079 0.486488 0.0143844 0.045355 0.349693 9999 23.7762
+35 0 0.190113 0.491565 0.12246 0 0.195862 9999 24.4755
+36 0.00993086 0.142839 0.401596 0.161468 0.0417435 0.242423 9999 25.1748
+37 0 0.212332 0.313682 0.182266 0.00856252 0.283158 9999 25.8741
+38 0.0249264 0 0.57772 0.0993421 0.084044 0.213968 9999 26.5734
+39 0 0 0.682281 0.0929108 0.0609926 0.163816 9999 27.2727
+40 0.0178264 0 0.535174 0 0.12895 0.318049 9999 27.972
+41 0.0403447 0 0.50243 0.00528352 0.123535 0.328406 9999 28.6713
+42 0.11056 0 0.505912 0.0663449 0.0423906 0.274793 9999 29.3706
+43 0.0456296 0 0.580288 0.0454063 0.0946248 0.234051 9999 30.0699
+44 0.111255 0.143569 0.26508 0.190045 0.0439879 0.246063 9999 30.7692
+45 0.0483754 0.204306 0.271057 0.24979 0.0288691 0.197603 9999 31.4685
+46 0 0.112422 0.293831 0.110235 0.0014701 0.482042 9999 32.1678
+47 0.0030812 0.172079 0.192999 0 0.0232909 0.60855 9999 32.8671
+48 0.0335814 0.0838607 0.555193 0.157785 0.0242729 0.145307 9999 33.5664
+49 0.0320962 0.0233806 0.461281 0.197198 0.041755 0.244288 9999 34.2657
+50 0.0128753 0.00960606 0.498804 0.13936 0.106429 0.232926 9999 34.965
+51 0.105717 0 0.683613 0 0.0229831 0.187687 9999 35.6643
+52 0.063264 0 0.348771 0.324717 0.20518 0.058068 9999 36.3636
+53 0.0139608 0 0.547023 0.169785 0.269231 0 9999 37.0629
+54 0.0239565 0 0.714758 0.0606793 0.092224 0.108383 9999 37.7622
+55 0.0768029 0 0.521682 0.171455 0.104346 0.125714 9999 38.4615
+56 0.0682442 0.0551155 0.407091 0.207673 0.128152 0.133725 9999 39.1608
+57 0.0498195 0.0402454 0.365197 0.138118 0.0901066 0.316514 9999 39.8601
+58 0.118476 0.166381 0.278687 0.0287943 0.0269466 0.380716 9999 40.5594
+59 0.106969 0.0815266 0.24933 0 0.031251 0.530924 9999 41.2587
+60 0.0896834 0.261773 0.165602 0.0973125 0.02814 0.357489 9999 41.958
+61 0 0 0.446494 0.173673 0.0965192 0.283313 9999 42.6573
+62 0.0492572 0.0774171 0.281477 0.261193 0.0253795 0.305277 9999 43.3566
+63 0.0357926 0.0783123 0.276182 0.266816 0.00815594 0.334741 9999 44.0559
+64 0.0490842 0.0613415 0.423152 0.16585 0 0.300572 9999 44.7552
+65 0.0140133 0.0367669 0.469314 0.158188 0.00116503 0.320553 9999 45.4545
+66 0 0.225826 0.257802 0.0680458 0 0.448326 9999 46.1538
+67 0.142941 0.0801921 0.134739 0.00851045 0 0.633618 9999 46.8531
+68 0.11075 0.108682 0.182754 0.128418 0 0.469396 9999 47.5524
+69 0.204551 0.0298937 0.152618 0 0 0.612937 9999 48.2517
+70 0 0.260009 0.372668 0.138058 0.000529638 0.228736 9999 48.951
+71 0.00084961 0.0245796 0.577109 0.252548 0.0749263 0.0699875 9999 49.6503
+72 0.0224664 0 0.865983 0.0666973 0.041563 0.00329029 9999 50.3497
+73 0.0522664 0.0745209 0.667986 0.0671092 0.0470412 0.0910762 9999 51.049
+74 0.0336282 0.0135487 0.759013 0.0177665 0.0772584 0.0987853 9999 51.7483
+75 0.354532 0.066739 0.159059 0 0 0.41967 9999 52.4476
+76 0.185074 0.100133 0.526066 0.0680855 0.000917063 0.119725 9999 53.1469
+77 0.31896 0.0228977 0.378534 0.141625 0.00978657 0.128197 9999 53.8462
+78 0.319439 0.0256464 0.238922 0.0650537 0.00091771 0.350022 9999 54.5455
+79 0.292739 0 0.16654 0.0906071 0.0311237 0.418989 9999 55.2448
+80 0.257722 0.128928 0.297528 0.068561 0 0.247261 9999 55.9441
+81 0.246436 0.0980231 0.26402 0.0452496 0 0.34627 9999 56.6434
+82 0.30479 0.0302206 0.283405 0.0108303 0.0173492 0.353405 9999 57.3427
+83 0 0 0.695516 0.0496374 0.152681 0.102166 9999 58.042
+84 0 0 0.566451 0.0445809 0.264581 0.124387 9999 58.7413
+85 0.0179321 0.0452681 0.607921 0.00891662 0.102372 0.21759 9999 59.4406
+86 0 0.0584902 0.484376 0.00602975 0.0584447 0.392659 9999 60.1399
+87 0.0649587 0.161053 0.19654 0.233888 0 0.34356 9999 60.8392
+88 0.123148 0.148593 0.187416 0.0525122 0.0145078 0.473823 9999 61.5385
+89 0.0515766 0.0708526 0.39573 0.247362 0.0556187 0.17886 9999 62.2378
+90 0.0456918 0 0.314604 0.342989 0.13487 0.161846 9999 62.9371
+91 0.110299 0 0.493371 0.211765 0.125147 0.0594185 9999 63.6364
+92 0.127669 0.125769 0.439536 0.118252 0.0741205 0.114653 9999 64.3357
+93 0.100391 0.111758 0.434779 0.141737 0.024439 0.186895 9999 65.035
+94 0.0142495 0.162889 0.231899 0.137433 0.00870333 0.444825 9999 65.7343
+95 0 0.0404451 0.462576 0.211441 0.00721251 0.278325 9999 66.4336
+96 0 0.0741412 0.361199 0.25011 0 0.314551 9999 67.1329
+97 0.0276143 0 0.581489 0.176757 0.0260948 0.188045 9999 67.8322
+98 0 0.037538 0.491821 0.172944 0.0448938 0.252803 9999 68.5315
+99 0.0442686 0 0.675005 0.11762 0.0269109 0.136196 9999 69.2308
+100 0.0931697 0.0195475 0.717562 0 0.00371291 0.166008 9999 69.9301
+101 0 0.136606 0.253541 0.0749032 0.0416573 0.493293 9999 70.6294
+102 0.129168 0.13241 0.277813 0.0631516 0.0199795 0.377477 9999 71.3287
+103 0.0322938 0.0262592 0.611123 0.169906 0.0523477 0.10807 9999 72.028
+104 0.0361717 0.10477 0.448793 0.105645 0.0835843 0.221036 9999 72.7273
+105 0.0761966 0 0.75206 0 0.00477624 0.166967 9999 73.4266
+106 0.0182142 0.181623 0.147597 0.0967909 0 0.555775 9999 74.1259
+107 0.00651693 0.0601829 0.174664 0.267082 0.000870255 0.490683 9999 74.8252
+108 0.136698 0.175903 0.287461 0.119034 0 0.280904 9999 75.5245
+109 0.201032 0.0672575 0.373744 0.158525 0.018317 0.181125 9999 76.2238
+110 0.101681 0.0782999 0.384751 0.247133 0.00198296 0.186152 9999 76.9231
+111 0.108267 0.079319 0.514732 0.117398 0.0112507 0.169032 9999 77.6224
+112 0.112714 0.159959 0.389651 0.0682887 0.0113304 0.258056 9999 78.3217
+113 0.0991343 0.145529 0.408607 0.174243 0.0215718 0.150915 9999 79.021
+114 0.0178498 0.163101 0.296828 0.126956 0.0620111 0.333255 9999 79.7203
+115 0.0674601 0.0676063 0.353334 0.151565 0.0228927 0.337142 9999 80.4196
+116 0.0525003 0.0498313 0.257195 0.337429 0.0243348 0.278709 9999 81.1189
+117 0.0435669 0.10773 0.188173 0.191323 0.0678702 0.401337 9999 81.8182
+118 0.0486458 0.0846869 0.156053 0.164707 0.126119 0.419788 9999 82.5175
+119 0.0132597 0.0717092 0.468511 0.176791 0.0440164 0.225712 9999 83.2168
+120 0.0278442 0 0.678476 0.208371 0.0261908 0.0591174 9999 83.9161
+121 0.0210119 0 0.734487 0.162156 0.0280867 0.0542583 9999 84.6154
+122 0.0876312 0.0738267 0.60165 0.152181 0.0847118 0 9999 85.3147
+123 0.0166612 0.0485464 0.588785 0.16631 0.0639294 0.115768 9999 86.014
+124 0.0227865 0.124937 0.449523 0.0855514 0.0823693 0.234833 9999 86.7133
+125 0.0480949 0.121928 0.669312 0.108275 0.0363108 0.0160791 9999 87.4126
+126 0.178175 0.0984042 0.605002 0.0552445 0.0218422 0.0413325 9999 88.1119
+127 0.357511 0.00598668 0.329328 0.104668 0.0247397 0.177767 9999 88.8112
+128 0.436215 0.0428692 0.253881 0.0367237 0.031188 0.199122 9999 89.5105
+129 0.350967 0.0604007 0.335404 0.0962557 0.0334537 0.123519 9999 90.2098
+130 0.212034 0.142997 0.459691 0.0772449 0.0221096 0.0859238 9999 90.9091
+131 0.173526 0.0580922 0.520627 0.0416464 0.0425461 0.163562 9999 91.6084
+132 0.222142 0.0548767 0.55291 0.0377946 0.0471708 0.085106 9999 92.3077
+133 0 0.234088 0.360587 0.0440926 0.0218483 0.339384 9999 93.007
+134 0.0177898 0.18098 0.117833 0.280763 0 0.402634 9999 93.7063
+135 0.0151203 0.0634743 0.410709 0.0801909 0.015643 0.414863 9999 94.4056
+136 0.0573364 0.241382 0.285449 0.0532691 0.0092241 0.353339 9999 95.1049
+137 0.0878759 0.162477 0.273202 0.0225534 0.0305018 0.423389 9999 95.8042
+138 0.00764523 0.162146 0.327905 0.101854 0.023067 0.377382 9999 96.5035
+139 0.0429827 0.10825 0.419019 0.154449 0.0263296 0.24897 9999 97.2028
+140 0.0374839 0.107298 0.340401 0 0.0140143 0.500803 9999 97.9021
+141 0.0219447 0.1138 0.379383 0.113569 0.000585264 0.370718 9999 98.6014
+142 0.0133893 0.110864 0.220331 0.0956945 0 0.559721 9999 99.3007
+143 0.0848167 0.196803 0.160011 0 0.0061171 0.552252 9999 100

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_ji2025_chili_cv0.log

@@ -0,0 +1,56 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 19167 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>50992 DEG expressed across 6 samples were identified
+>Group size: 499, Kappa: 10.8955797014857
+>Best kappa: 10.8955797014857 
+>SVD UpperRightDiag: 44968.1
+>SVD LowerRightDiag: 4127.19
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.0659631 0 0.206489 0.106881 0.62003 0.000636375 9999 14.2857
+2 0.0664402 0 0.294695 0.0677064 0.383451 0.187707 9999 28.5714
+3 0.0619614 0.0941273 0.177707 0.0922422 0.305689 0.268273 9999 42.8571
+4 0.043766 0.130443 0.156341 0.123794 0.260972 0.284684 9999 57.1429
+5 0.0469173 0.138396 0.0789841 0.0988704 0.609266 0.0275661 9999 71.4286
+6 0.0550578 0 0.163133 0.171844 0.452859 0.157106 9999 85.7143
+7 0.124364 0 0.210481 0.240939 0.352145 0.0720705 9999 100