Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3/per_donor.csv +26 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3/summary.json +147 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3_cibersortx/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3_cibersortx/per_donor.csv +26 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3/per_donor.csv
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| 1 |
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donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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| 2 |
+
N064_TOL,TOL,1.372731656710467,1.2561254986426682,1.3742869109325042,1.2779053912393596,0.201727248465439,0.059142904878492594,0.002206555217527782,0.6517213771016813,0.008550951084400784,0.017186305734382307,0.044035228182546036,0.5465093175804446,0.5899584235688726,0.1677341873498799,0.32124323724875553,0.3142001671833828,0.07606084867894315,0.010894258377957898,5.9223822079401555e-06,0.010008006405124099,0.0536593308299485,0.07644262591362658,0.05044035228182546
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| 3 |
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N064_FU1,FU1,1.3145188276086444,1.2365485141891404,1.314396488296946,1.2476261925093624,0.3749663017814982,0.03523260790150844,2.104204401724078e-05,0.6396222365314446,0.0026425232846683665,0.0035868266478115496,0.016527151749302426,0.48623610177483517,0.5269057137603541,0.13865636402661516,0.37648943385127953,0.37435618086229117,0.19167203262502683,0.007948443842911738,4.149141539641656e-06,0.00472204335694355,0.09145088934479684,0.09512608754398642,0.008800171710667526
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| 4 |
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N032_AC,AC,1.369737129322052,1.315747934744429,1.3754686239815341,1.3055124468528834,0.2348571428571428,0.01451139293912047,2.5346071372887944e-05,0.5891156462585034,0.03720483040334816,0.039723227691613745,0.10979591836734694,0.43500221572643966,0.4680780361289722,0.17551020408163265,0.2429805593630746,0.21263259988546382,0.04707482993197279,0.015035659625452882,8.711916123426225e-06,0.025714285714285714,0.25526534194256423,0.27953207830645393,0.0527891156462585
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| 5 |
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N055_AC,AC,0.9209887373631538,0.8696244778434501,1.0890074888288215,1.0537133292576812,0.2151792014856081,5.2775260795700494e-05,6.11778842759168e-06,0.340297121634169,0.0017972408993885247,3.197415774737497e-05,0.07799442896935933,0.6638531017586096,0.7094249598709397,0.32474466109563604,0.18726956888886986,0.16899118924821077,0.2051996285979573,0.005594638424764037,2.812519580582601e-06,0.0060352831940575676,0.14143267476757235,0.1215429464150942,0.0457288765088208
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| 6 |
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N136_TOL,TOL,1.1579437028420478,1.1485513159475387,1.1719724033073817,1.1512338792003447,0.6979499341238473,0.0022421819032405962,7.218047776636448e-06,0.48616600790513836,0.009779920333793737,0.00863475241168346,0.10013175230566534,0.5891105560782369,0.6192073354583424,0.19104084321475626,0.2191820506496329,0.17036199608144914,0.0922266139657444,0.005852460800537496,1.4613869731663835e-06,0.0013175230566534915,0.17383283023455828,0.20178723661377515,0.12911725955204217
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| 7 |
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N136_FU1,FU1,1.104705605320091,1.1250420899680278,1.1086265022239494,1.1015401591994185,0.4724728390843868,0.0001226272940320807,4.522213251786901e-06,0.4246668944311582,0.022604489990284936,0.021949191470955382,0.14724974376494704,0.6057313928434823,0.6287459495164638,0.19337205329689103,0.24041831425480373,0.1952610178163036,0.09531943969935087,0.007454358042885333,1.649012768157304e-06,0.0023915271609156134,0.12366881757451159,0.1540376699702571,0.13700034164673727
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| 8 |
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N138_TOL,TOL,0.40414768384834976,0.3747721672638602,0.5485612957190572,0.46715335756390525,1.0703500357444595,4.479169180220946e-05,4.486267833424516e-06,0.13803860401637746,0.00943359127787168,0.0044684960927279995,0.02807564827451745,0.557083671437,0.5974624875426379,0.5878338857477091,0.1975164350965965,0.14264070611494198,0.17703255995320724,0.009390980285487195,3.3450146324921256e-06,0.006044063170208618,0.22653053021124234,0.2554204789672262,0.06297523883798012
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| 9 |
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N138_FU1,FU1,0.6784903690321965,0.6257198903608648,0.7796643220112153,0.7255319899209737,0.1547894320518905,3.333111926163509e-05,2.7108350104966943e-06,0.2728998576174656,0.008783896776674311,0.003982402885824714,0.04841006169909824,0.6897051386924078,0.7301915604329962,0.4831514000949217,0.13078367227895799,0.09673048394548625,0.1134314190792596,0.00485343916852963,1.2491417377894024e-06,0.005220692928334125,0.16584052196416874,0.16909159275894456,0.07688656858092074
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| 10 |
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N128_BC,BC,1.2063577288750194,1.1814009182137146,1.208828572460337,1.1608379603066366,0.2032017768665641,7.809604410546412e-05,6.925990046557004e-06,0.5158892875448488,0.012775302315883754,0.01418697654008522,0.06817016914402871,0.6036301366192139,0.6398443494823298,0.29420809841107126,0.2438359202121105,0.20247373105744232,0.07842132239876987,0.013821847299939632,2.937799144720081e-06,0.03331624807790876,0.12585869750874654,0.14348507913095135,0.00999487442337263
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| 11 |
+
N128_AC,AC,1.261713013995544,1.2361236849990322,1.2634965508149976,1.212752321323203,0.2862145226686325,0.00021802677742459314,9.395972106687048e-06,0.5488389237007003,0.010721209419947194,0.012699635360727903,0.06524143015112421,0.5954465158189239,0.6341232685771602,0.2790269074824917,0.2757083408417675,0.2336821945115819,0.07077036490969407,0.01456692720064248,2.4675669237920464e-06,0.029487652045705862,0.10333897994129437,0.11948303801149944,0.006634721710283818
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| 12 |
+
N129_BC,BC,1.40661266383817,1.3686853381351265,1.5093877034492187,1.4252664763995113,0.4109983803045027,0.008459870416431557,9.305607690369906e-06,0.5963718820861678,0.017912520280704662,0.01938960412049608,0.11305474570780694,0.5792223711028173,0.6097266282230472,0.08357628765792031,0.2858687380116128,0.24744195271243374,0.18140589569160998,0.01199307110669685,2.889224124630477e-06,0.013281503077421444,0.09654342908173691,0.12342962011220793,0.012309685779073534
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| 13 |
+
N129_AC,AC,1.5403242047739385,1.5117073551531162,1.5409012714038388,1.492008446793883,0.3819385275196569,0.0018866935365560416,6.8423226810351435e-06,0.7076483202287348,0.010949316051857755,0.009672225083059621,0.04932094353109364,0.5293976951893996,0.5633101379060421,0.07969978556111508,0.33748094731502004,0.30058446746494727,0.13366690493209435,0.01115305765275513,1.575025016951322e-06,0.0228734810578985,0.10913229025441146,0.12642475219825297,0.006790564689063617
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| 14 |
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N158_AC,AC,0.5892537064121296,0.5043049456172372,0.532380598018702,0.4013260277518568,0.8419624788832576,0.059787080243309476,0.00637863820593418,0.24619898639637236,0.02907498343635407,0.04091962900923984,0.026673779674579887,0.5694921285679375,0.5994967378703553,0.6295012003200854,0.21317920351568212,0.2032875544277512,0.04934649239797279,0.019075120193951443,4.572531462788799e-06,0.024806615097359295,0.10939148404276534,0.14991286795525674,0.0234729261136303
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| 15 |
+
N159_BC,BC,0.7468338621041197,0.6868668006392591,0.9621723270213403,0.9230243973886734,0.1898484607920966,0.4171491917176345,0.45627342035356944,0.6996559936491136,0.010251165824433396,0.018337454999219883,0.018523418893887273,0.28183732228325875,0.3047879356031691,0.08123842286319131,0.12434736528399809,0.05776538453588956,0.173590897062715,0.010614060765392078,1.9929703488859556e-06,0.014024874305371792,0.1558008941252831,0.16283381153780313,0.01296639322572109
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| 16 |
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N002_TOL,TOL,0.9405896188419882,0.8991500512926405,0.943432815646305,0.8925006599555387,0.4634783159227603,0.010054165601188138,2.9765708904534728e-05,0.41579613801836024,0.020381479576859544,0.02333990228138154,0.05777144666033555,0.5379403102692754,0.578149303657927,0.3779677113010446,0.2799926737203166,0.24409550425278917,0.1179170623615068,0.013658211733403494,4.405146491250744e-06,0.020101297879075657,0.13797315909895677,0.1543811189525064,0.010446343779677113
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| 17 |
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N002_FU1,FU1,0.8089117514490738,0.7871747295702602,0.8281595411971153,0.7736643419309448,0.378606365159129,0.0014148867309419328,1.693716547668692e-05,0.31618090452261305,0.007401816287249458,0.007178767087830147,0.07276381909547738,0.5724886025427312,0.6082608721260377,0.45587939698492463,0.2456713882540268,0.21842184176553864,0.12261306532663317,0.009254223653964869,6.711479442677513e-06,0.02271356783919598,0.16376908253108577,0.16611487037567407,0.00984924623115578
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| 18 |
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N005_BC,BC,1.55572514894636,1.5385712789793797,1.5557325381891294,1.53697739577353,0.5196569691251245,0.00012732527661795436,1.4470850856574847e-05,0.7200817738638151,0.001748320377621958,7.056559788731751e-05,0.05016512030193427,0.555787353148684,0.6051689934552804,0.11448340934109137,0.27494032952699327,0.2502334807060485,0.09891492373014625,0.006791223112085447,4.89733409132884e-06,0.007705614090265765,0.16060544855799747,0.14450759205583588,0.008649158672747287
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| 19 |
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N005_AC,AC,1.6276272307394681,1.4976954110169955,1.624933892637731,1.4978213528033457,0.0521572968249344,0.07117835364552295,0.011276622431008965,0.8100786484124672,0.006729785216412456,0.01032510514572315,0.015147101660355374,0.31797125906271617,0.34378528508904166,0.07952228371686572,0.5351042026143116,0.5599357469082806,0.08243518788231867,0.00866507028147496,5.571705441732402e-06,0.010195164579085349,0.06035132917956197,0.07467166872050379,0.0026216137489076608
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| 20 |
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N012_TOL,TOL,0.8486485452649148,0.8411849705712557,0.8491050333531456,0.8420091321817249,0.3055974561534257,0.000134535126094508,9.95857497767343e-06,0.34759278581010583,0.005715072299561019,0.00270063436988714,0.07884930690117753,0.6450156613673502,0.6878793187395599,0.4672827545088687,0.2515237058051724,0.21342181591182927,0.08570576837084513,0.007327222044923325,3.4411748017502465e-06,0.0005962140408406618,0.09028380335689855,0.09598483122894427,0.01997317036816217
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| 21 |
+
N012_FU1,FU1,1.1018524151695979,1.0944817884196276,1.1560421651670856,1.1116111345519626,0.8079786373693446,6.263838673383367e-05,5.797835329997483e-06,0.35889219501029984,0.004081223640577507,0.0011371759245251186,0.19249256122682537,0.7325007047420873,0.7829245637808444,0.3126573586633097,0.1968064751160778,0.162998076415279,0.10849164568551156,0.0035800635262167057,2.230877822409215e-06,0.000686655985351339,0.06296889458830678,0.052932155166199146,0.02677958342870222
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| 22 |
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N022_TOL,TOL,1.3345264830993226,1.2272206453113474,1.58856006230755,1.5183041810320321,0.6373672966310601,0.0009007417651059826,1.0437863896052612e-05,0.4864420706655711,0.0012032960119369393,2.4936576844963577e-05,0.03697617091207888,0.5633504973024043,0.6004150816117733,0.045740892906053134,0.32594545879489234,0.27436120323720653,0.4182415776499589,0.003590316599955924,2.606715868527421e-06,0.0,0.10500968952570458,0.12518573399441071,0.01259928786633799
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| 23 |
+
N022_FU1,FU1,1.0569924808496438,0.9272254419412054,1.0561337800944137,0.939261014051282,0.3357840032480714,0.0655992855285044,3.106803176417359e-05,0.48477466504263095,0.00428373040710489,0.004968428449625926,0.048721071863580996,0.41124245230868667,0.44674713420257817,0.20259845716605765,0.45222307891117447,0.4685418680669051,0.25334957369062117,0.004768827574243704,3.323590000355236e-06,0.0,0.06188262527028593,0.07970817765912624,0.010556232237109216
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| 24 |
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N035_TOL,TOL,0.8118319460827301,0.7405145053935336,1.0469411741235684,0.98502693948673,0.3932932832707551,0.0001712943021402364,9.778345353112878e-06,0.2853566958698373,0.0018565812455611614,3.4389830195960384e-05,0.016896120150187734,0.4840127007553334,0.5202040430475455,0.31101376720901125,0.2771492507383607,0.25048226586694416,0.3404255319148936,0.00701117796335378,3.1498623244436558e-06,0.01376720901126408,0.22979899499525064,0.22926637304763675,0.03254067584480601
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| 25 |
+
N043_TOL,TOL,1.3301198485826835,1.2773342711623865,1.5504479445381811,1.516656358996848,1.0199832851173256,0.00011425575761933051,1.039809320821991e-05,0.3548698167791707,0.0007556783180875951,2.728620715582174e-05,0.05737704918032787,0.533097106974955,0.5809554395353718,0.04580520732883317,0.25390555329391945,0.23123401346082517,0.4811957569913211,0.007139654212321155,3.9613611624053114e-06,0.0028929604628736743,0.20498775144309742,0.18776890134227647,0.05785920925747348
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| 26 |
+
N043_FU1,FU1,0.4594044536385278,0.44126455883062643,0.5085837879268817,0.4346730443932293,0.5694058772185046,0.007555003851393707,1.462428613604734e-05,0.1638056444573756,0.00867464856256455,0.005367480424547974,0.06779167878964212,0.5676187199018894,0.5989660729784744,0.5728833284841431,0.28949771786805917,0.23728298755903005,0.14896712249054408,0.008560840594682555,4.4086504418704915e-06,0.0034914169333721268,0.11809306922141062,0.15836442610136953,0.043060808844922895
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3/summary.json
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|
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|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
|
|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ji2025_chili",
|
| 3 |
+
"comparison": "fewshot",
|
| 4 |
+
"draw": 3,
|
| 5 |
+
"gene_mode": "score",
|
| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw3",
|
| 7 |
+
"lora_arm": "lora5",
|
| 8 |
+
"n_donors": 25,
|
| 9 |
+
"contrast": true,
|
| 10 |
+
"genes_scoring": 5752,
|
| 11 |
+
"genes_covered_by_Z_all_donors": 5678,
|
| 12 |
+
"bayesprism": {
|
| 13 |
+
"comp_l1": 1.0780235525884094,
|
| 14 |
+
"comp_l1_by_variant": {
|
| 15 |
+
"final_cells": 1.0780235525884094,
|
| 16 |
+
"first_cells": 1.0285215433682688,
|
| 17 |
+
"final_mrna": 1.1394889517460378,
|
| 18 |
+
"first_mrna": 1.0797575172345943
|
| 19 |
+
},
|
| 20 |
+
"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.0191,
|
| 23 |
+
"B cell": 0.0108,
|
| 24 |
+
"Monocyte": 0.583,
|
| 25 |
+
"NK cell": 0.2413,
|
| 26 |
+
"DC": 0.0,
|
| 27 |
+
"Other": 0.1459
|
| 28 |
+
},
|
| 29 |
+
"first_cells": {
|
| 30 |
+
"T cell": 0.0303,
|
| 31 |
+
"B cell": 0.0102,
|
| 32 |
+
"Monocyte": 0.5461,
|
| 33 |
+
"NK cell": 0.2712,
|
| 34 |
+
"DC": 0.0091,
|
| 35 |
+
"Other": 0.1331
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.0157,
|
| 39 |
+
"B cell": 0.0102,
|
| 40 |
+
"Monocyte": 0.6774,
|
| 41 |
+
"NK cell": 0.1321,
|
| 42 |
+
"DC": 0.0,
|
| 43 |
+
"Other": 0.1646
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.0255,
|
| 47 |
+
"B cell": 0.0097,
|
| 48 |
+
"Monocyte": 0.6453,
|
| 49 |
+
"NK cell": 0.1499,
|
| 50 |
+
"DC": 0.0172,
|
| 51 |
+
"Other": 0.1525
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"logfc_r_mean_cp10k": 0.22068415612787792,
|
| 55 |
+
"partial_r_mean_cp10k": 0.044297362609563254,
|
| 56 |
+
"logfc_r_mean_cp10k_covered_genes": 0.2223200818882785,
|
| 57 |
+
"deg_top50_sum": 0,
|
| 58 |
+
"deg_top50_sum_covered_genes": 0,
|
| 59 |
+
"per_type_logfc_r": {
|
| 60 |
+
"T cell": 0.1208,
|
| 61 |
+
"B cell": 0.1784,
|
| 62 |
+
"Monocyte": 0.4127,
|
| 63 |
+
"NK cell": 0.1708
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.464,
|
| 68 |
+
"B cell": 0.0643,
|
| 69 |
+
"Monocyte": 0.2678,
|
| 70 |
+
"NK cell": 0.1577,
|
| 71 |
+
"DC": 0.0113,
|
| 72 |
+
"Other": 0.0348
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.4487906027467767,
|
| 76 |
+
"coverage": 0.7586666666666667,
|
| 77 |
+
"logfc_r_mean_cp10k": 0.4410983924408845,
|
| 78 |
+
"deg_top50_sum": 0,
|
| 79 |
+
"partial_r_mean_cp10k": 0.39982215110012487
|
| 80 |
+
},
|
| 81 |
+
"broadcast": {
|
| 82 |
+
"logfc_r_mean_cp10k": 0.2577780039471977,
|
| 83 |
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"logfc_r_mean_cp10k_covered_genes": 0.24577219938281142,
|
| 84 |
+
"deg_top50_sum": 0
|
| 85 |
+
},
|
| 86 |
+
"other_arms": {
|
| 87 |
+
"zs_raw": {
|
| 88 |
+
"comp_l1": 0.6998279977951056,
|
| 89 |
+
"logfc_r_mean_cp10k": 0.10707639011920397,
|
| 90 |
+
"deg_top50_sum": 0
|
| 91 |
+
},
|
| 92 |
+
"zs_pseudo": {
|
| 93 |
+
"comp_l1": 0.1694493540051105,
|
| 94 |
+
"logfc_r_mean_cp10k": 0.1391311050440007,
|
| 95 |
+
"deg_top50_sum": 0
|
| 96 |
+
},
|
| 97 |
+
"zs_cal": {
|
| 98 |
+
"comp_l1": 0.4913179216867248,
|
| 99 |
+
"logfc_r_mean_cp10k": 0.23160934103995254,
|
| 100 |
+
"deg_top50_sum": 0
|
| 101 |
+
}
|
| 102 |
+
},
|
| 103 |
+
"gates": {
|
| 104 |
+
"observed_composition_equal": true,
|
| 105 |
+
"broadcast_r_equal": true,
|
| 106 |
+
"broadcast_deg_equal": true
|
| 107 |
+
},
|
| 108 |
+
"n_case": 15,
|
| 109 |
+
"n_control": 10,
|
| 110 |
+
"deg_per_type": {
|
| 111 |
+
"zero_filled": {
|
| 112 |
+
"bp": {
|
| 113 |
+
"T cell": 0,
|
| 114 |
+
"B cell": 0,
|
| 115 |
+
"Monocyte": 0,
|
| 116 |
+
"NK cell": 0,
|
| 117 |
+
"DC": 0
|
| 118 |
+
},
|
| 119 |
+
"broadcast": {
|
| 120 |
+
"T cell": 0,
|
| 121 |
+
"B cell": 0,
|
| 122 |
+
"Monocyte": 0,
|
| 123 |
+
"NK cell": 0,
|
| 124 |
+
"DC": 0
|
| 125 |
+
}
|
| 126 |
+
},
|
| 127 |
+
"covered": {
|
| 128 |
+
"bp": {
|
| 129 |
+
"T cell": 0,
|
| 130 |
+
"B cell": 0,
|
| 131 |
+
"Monocyte": 0,
|
| 132 |
+
"NK cell": 0,
|
| 133 |
+
"DC": 0
|
| 134 |
+
},
|
| 135 |
+
"broadcast": {
|
| 136 |
+
"T cell": 0,
|
| 137 |
+
"B cell": 0,
|
| 138 |
+
"Monocyte": 0,
|
| 139 |
+
"NK cell": 0,
|
| 140 |
+
"DC": 0
|
| 141 |
+
}
|
| 142 |
+
}
|
| 143 |
+
},
|
| 144 |
+
"tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
|
| 145 |
+
"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 146 |
+
"seconds": 0.8
|
| 147 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3_cibersortx/contrast.csv
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,3028,,0.2368920077117674,,
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,3028,,0.30559676102300276,,
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3238,,0.16221245678147309,,
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3238,,0.047548729682353,,
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3132,,0.4012426962403039,,
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3132,,0.36057989165867327,,
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,3064,,0.23076485505524633,,
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,3064,,0.11924462462412533,,
|
| 10 |
+
covered,T cell,mean_cp10k,0,,,,
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,0,,,,
|
| 12 |
+
covered,B cell,mean_cp10k,0,,,,
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,0,,,,
|
| 14 |
+
covered,Monocyte,mean_cp10k,0,,,,
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,0,,,,
|
| 16 |
+
covered,NK cell,mean_cp10k,0,,,,
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,0,,,,
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw3_cibersortx/per_donor.csv
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N064_TOL,TOL,0.20897720250302834,0.20897720250302834,0.3869960677096689,0.3869960677096689,0.201727248465439,0.6417783672455176,0.6417783672455176,0.6517213771016813,0.08076109852614989,0.08076109852614989,0.044035228182546036,0.1888936916940891,0.1888936916940891,0.1677341873498799,0.0,0.0,0.07606084867894315,0.0566112329688253,0.0566112329688253,0.010008006405124099,0.03195560956541823,0.03195560956541823,0.05044035228182546
|
| 3 |
+
N064_FU1,FU1,0.4201784278950526,0.4201784278950526,0.5653502835993539,0.5653502835993539,0.3749663017814982,0.47855907745030557,0.47855907745030557,0.6396222365314446,0.07329598829492426,0.07329598829492426,0.016527151749302426,0.19890858831831115,0.19890858831831115,0.13865636402661516,0.14736802111558303,0.14736802111558303,0.19167203262502683,0.0,0.0,0.00472204335694355,0.10186832482087603,0.10186832482087603,0.008800171710667526
|
| 4 |
+
N032_AC,AC,0.5656140878515563,0.5656140878515563,0.678657154941881,0.678657154941881,0.2348571428571428,0.4181484687710111,0.4181484687710111,0.5891156462585034,0.13150242529962503,0.13150242529962503,0.10979591836734694,0.11074516757531958,0.11074516757531958,0.17551020408163265,0.0,0.0,0.04707482993197279,0.08010680330391658,0.08010680330391658,0.025714285714285714,0.2594971350501276,0.2594971350501276,0.0527891156462585
|
| 5 |
+
N055_AC,AC,0.6848249089180474,0.6848249089180474,0.711537853451047,0.711537853451047,0.2151792014856081,0.1426381383661922,0.1426381383661922,0.340297121634169,0.17731149532241808,0.17731149532241808,0.07799442896935933,0.2578568903597049,0.2578568903597049,0.32474466109563604,0.12733392814284158,0.12733392814284158,0.2051996285979573,0.015502461332061382,0.015502461332061382,0.0060352831940575676,0.2793570864767819,0.2793570864767819,0.0457288765088208
|
| 6 |
+
N136_TOL,TOL,0.8540107412532238,0.8540107412532238,0.9439345069674877,0.9439345069674877,0.6979499341238473,0.07878411187384059,0.07878411187384059,0.48616600790513836,0.08768983365349485,0.08768983365349485,0.10013175230566534,0.2916451238033978,0.2916451238033978,0.19104084321475626,0.08636258107925422,0.08636258107925422,0.0922266139657444,0.0,0.0,0.0013175230566534915,0.4555183495900126,0.4555183495900126,0.12911725955204217
|
| 7 |
+
N136_FU1,FU1,0.6657635235220962,0.6657635235220962,0.7614469798320901,0.7614469798320901,0.4724728390843868,0.1923234118322871,0.1923234118322871,0.4246668944311582,0.1281625691021736,0.1281625691021736,0.14724974376494704,0.3850556947793437,0.3850556947793437,0.19337205329689103,0.01625986236086288,0.01625986236086288,0.09531943969935087,0.0,0.0,0.0023915271609156134,0.2781984619253327,0.2781984619253327,0.13700034164673727
|
| 8 |
+
N138_TOL,TOL,1.142845174089071,1.142845174089071,1.1277539293268284,1.1277539293268284,1.0703500357444595,0.03586608988849443,0.03586608988849443,0.13803860401637746,0.10560482213732775,0.10560482213732775,0.02807564827451745,0.24154121947426802,0.24154121947426802,0.5878338857477091,0.05407515330999587,0.05407515330999587,0.17703255995320724,0.01897859933033264,0.01897859933033264,0.006044063170208618,0.5439341158595812,0.5439341158595812,0.06297523883798012
|
| 9 |
+
N138_FU1,FU1,1.1106045714073116,1.1106045714073116,1.1095589554246983,1.1095589554246983,0.1547894320518905,0.010340275855781901,0.010340275855781901,0.2728998576174656,0.09692676761929352,0.09692676761929352,0.04841006169909824,0.2505025599647861,0.2505025599647861,0.4831514000949217,0.0533375552674232,0.0533375552674232,0.1134314190792596,0.060590541179402074,0.060590541179402074,0.005220692928334125,0.5283023001133134,0.5283023001133134,0.07688656858092074
|
| 10 |
+
N128_BC,BC,0.6013744449097043,0.6013744449097043,0.6824321057204981,0.6824321057204981,0.2032017768665641,0.3393073826351211,0.3393073826351211,0.5158892875448488,0.11702117395507053,0.11702117395507053,0.06817016914402871,0.24852410326471672,0.24852410326471672,0.29420809841107126,0.0,0.0,0.07842132239876987,0.07728519502289527,0.07728519502289527,0.03331624807790876,0.21786214512219648,0.21786214512219648,0.00999487442337263
|
| 11 |
+
N128_AC,AC,0.6358343290596733,0.6358343290596733,0.7735204340240398,0.7735204340240398,0.2862145226686325,0.34824605089427546,0.34824605089427546,0.5488389237007003,0.11385929931947635,0.11385929931947635,0.06524143015112421,0.21691317912439162,0.21691317912439162,0.2790269074824917,0.015559801544382473,0.015559801544382473,0.07077036490969407,0.13065059184434208,0.13065059184434208,0.029487652045705862,0.17477107727313218,0.17477107727313218,0.006634721710283818
|
| 12 |
+
N129_BC,BC,0.818516808856876,0.818516808856876,0.9737086388163039,0.9737086388163039,0.4109983803045027,0.325161686323467,0.325161686323467,0.5963718820861678,0.12805204355004968,0.12805204355004968,0.11305474570780694,0.20196353202524323,0.20196353202524323,0.08357628765792031,0.043357687025872685,0.043357687025872685,0.18140589569160998,0.08612294133278096,0.08612294133278096,0.013281503077421444,0.2153421097425864,0.2153421097425864,0.012309685779073534
|
| 13 |
+
N129_AC,AC,0.8031470478786663,0.8031470478786663,0.9848927005507805,0.9848927005507805,0.3819385275196569,0.30728652928462447,0.30728652928462447,0.7076483202287348,0.0833444186483284,0.0833444186483284,0.04932094353109364,0.16191671717268133,0.16191671717268133,0.07969978556111508,0.13245517193687154,0.13245517193687154,0.13366690493209435,0.07264379703769817,0.07264379703769817,0.0228734810578985,0.24235336591979606,0.24235336591979606,0.006790564689063617
|
| 14 |
+
N158_AC,AC,1.153466345617237,1.153466345617237,1.1975325481328267,1.1975325481328267,0.8419624788832576,0.17130891847108795,0.17130891847108795,0.24619898639637236,0.12493956530906183,0.12493956530906183,0.026673779674579887,0.14610873651674264,0.14610873651674264,0.6295012003200854,0.030895851317981546,0.030895851317981546,0.04934649239797279,0.052553110625936525,0.052553110625936525,0.024806615097359295,0.47419381775918956,0.47419381775918956,0.0234729261136303
|
| 15 |
+
N159_BC,BC,0.793845352782504,0.793845352782504,0.9003107122536724,0.9003107122536724,0.1898484607920966,0.47925545651133633,0.47925545651133633,0.6996559936491136,0.07785594337084371,0.07785594337084371,0.018523418893887273,0.1278886634200708,0.1278886634200708,0.08123842286319131,0.0,0.0,0.173590897062715,0.011093632114611998,0.011093632114611998,0.014024874305371792,0.30390630458313717,0.30390630458313717,0.01296639322572109
|
| 16 |
+
N002_TOL,TOL,0.7040599861132786,0.7040599861132786,0.8074893236616212,0.8074893236616212,0.4634783159227603,0.44425274555555727,0.44425274555555727,0.41579613801836024,0.08855570122988676,0.08855570122988676,0.05777144666033555,0.12521785944276428,0.12521785944276428,0.3779677113010446,0.018636921163147885,0.018636921163147885,0.1179170623615068,0.12070162801063664,0.12070162801063664,0.020101297879075657,0.20263514459800724,0.20263514459800724,0.010446343779677113
|
| 17 |
+
N002_FU1,FU1,0.9521046800536237,0.9521046800536237,1.1103499942741615,1.1103499942741615,0.378606365159129,0.2668017017918617,0.2668017017918617,0.31618090452261305,0.059322586565454555,0.059322586565454555,0.07276381909547738,0.09426335206769473,0.09426335206769473,0.45587939698492463,0.07099720547782534,0.07099720547782534,0.12261306532663317,0.13305091878141445,0.13305091878141445,0.02271356783919598,0.3755642353157492,0.3755642353157492,0.00984924623115578
|
| 18 |
+
N005_BC,BC,1.05985607806019,1.05985607806019,1.1837236331704246,1.1837236331704246,0.5196569691251245,0.1930570482797795,0.1930570482797795,0.7200817738638151,0.07038327117133193,0.07038327117133193,0.05016512030193427,0.15657533848623062,0.15657533848623062,0.11448340934109137,0.0960116102840869,0.0960116102840869,0.09891492373014625,0.04310890130925001,0.04310890130925001,0.007705614090265765,0.4408638304693211,0.4408638304693211,0.008649158672747287
|
| 19 |
+
N005_AC,AC,0.5436972697221346,0.5436972697221346,0.584736412740571,0.584736412740571,0.0521572968249344,0.5501115330132299,0.5501115330132299,0.8100786484124672,0.02532986762504535,0.02532986762504535,0.015147101660355374,0.06764076425503576,0.06764076425503576,0.07952228371686572,0.1993141377069609,0.1993141377069609,0.08243518788231867,0.03923533537021976,0.03923533537021976,0.010195164579085349,0.1183683620295083,0.1183683620295083,0.0026216137489076608
|
| 20 |
+
N012_TOL,TOL,0.7524017067289193,0.7524017067289193,0.7651745912413688,0.7651745912413688,0.3055974561534257,0.2152031978535559,0.2152031978535559,0.34759278581010583,0.15381548412754772,0.15381548412754772,0.07884930690117753,0.2326849680756818,0.2326849680756818,0.4672827545088687,0.07708850343696295,0.07708850343696295,0.08570576837084513,0.0,0.0,0.0005962140408406618,0.3212078465062516,0.3212078465062516,0.01997317036816217
|
| 21 |
+
N012_FU1,FU1,0.5460865559542046,0.5460865559542046,0.6323556146838782,0.6323556146838782,0.8079786373693446,0.12860564955383025,0.12860564955383025,0.35889219501029984,0.22502066022942974,0.22502066022942974,0.19249256122682537,0.34029210639418056,0.34029210639418056,0.3126573586633097,0.06642156915023016,0.06642156915023016,0.10849164568551156,0.0,0.0,0.000686655985351339,0.23966001467232922,0.23966001467232922,0.02677958342870222
|
| 22 |
+
N022_TOL,TOL,0.8970947163658458,0.8970947163658458,1.0439581591978158,1.0439581591978158,0.6373672966310601,0.3278380787012573,0.3278380787012573,0.4864420706655711,0.07061093053459404,0.07061093053459404,0.03697617091207888,0.2544426228065316,0.2544426228065316,0.045740892906053134,0.1282982114313498,0.1282982114313498,0.4182415776499589,0.0,0.0,0.0,0.21881015652626726,0.21881015652626726,0.01259928786633799
|
| 23 |
+
N022_FU1,FU1,0.3995654341047451,0.3995654341047451,0.48544743147397196,0.48544743147397196,0.3357840032480714,0.4315624243770706,0.4315624243770706,0.48477466504263095,0.05832953089366979,0.05832953089366979,0.048721071863580996,0.09850121150658085,0.09850121150658085,0.20259845716605765,0.21087634296328572,0.21087634296328572,0.25334957369062117,0.013197606570028105,0.013197606570028105,0.0,0.18753288368936485,0.18753288368936485,0.010556232237109216
|
| 24 |
+
N035_TOL,TOL,1.056853076708327,1.056853076708327,1.1310766190662558,1.1310766190662558,0.3932932832707551,0.18083143160785212,0.18083143160785212,0.2853566958698373,0.05255401104943568,0.05255401104943568,0.016896120150187734,0.11942904089017087,0.11942904089017087,0.31101376720901125,0.10810898414155556,0.10810898414155556,0.3404255319148936,0.03206486214242038,0.03206486214242038,0.01376720901126408,0.5070116701685654,0.5070116701685654,0.03254067584480601
|
| 25 |
+
N043_TOL,TOL,1.103483791221076,1.103483791221076,1.235270357028209,1.235270357028209,1.0199832851173256,0.14379476146056092,0.14379476146056092,0.3548698167791707,0.06984191366146024,0.06984191366146024,0.05737704918032787,0.10242279228042915,0.10242279228042915,0.04580520732883317,0.14052891669939294,0.14052891669939294,0.4811957569913211,0.04747536654083382,0.04747536654083382,0.0028929604628736743,0.495936249357323,0.495936249357323,0.05785920925747348
|
| 26 |
+
N043_FU1,FU1,0.5455011396720539,0.5455011396720539,0.4764126808941052,0.4764126808941052,0.5694058772185046,0.22389449308926648,0.22389449308926648,0.1638056444573756,0.08292355922148113,0.08292355922148113,0.06779167878964212,0.3581135714316117,0.3581135714316117,0.5728833284841431,0.09447772664042071,0.09447772664042071,0.14896712249054408,0.0,0.0,0.0034914169333721268,0.24059064961722,0.24059064961722,0.043060808844922895
|