Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n40/lora/receipts/score.json

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+    "source_summary": {
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+    "annotation_reexecuted": false
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n40/lora/score/per_donor.csv

@@ -0,0 +1,22 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n40/lora/score/summary.json

@@ -0,0 +1,214 @@
+{
+  "schema": "paired_ft_scores.v1",
+  "dataset": "immicro",
+  "written_utc": "2026-10-15T09:51:41.850863+00:00",
+  "command": [
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+    "--dataset",
+    "immicro",
+    "--out",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n40/score",
+    "--arm",
+    "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n40/lora.npz",
+    "--condition",
+    "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n40/test_raw.npz",
+    "--donors",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold3/n40/test_samples.txt",
+    "--threads",
+    "2",
+    "--no-contrast",
+    "--no-deg"
+  ],
+  "arms": [
+    "lora"
+  ],
+  "donors": [
+    "HS1",
+    "HS4",
+    "HS10",
+    "HS15",
+    "HS23",
+    "HS29",
+    "HS30",
+    "HS40",
+    "HS49",
+    "HS53",
+    "HS61",
+    "HS62",
+    "HS63",
+    "HS69",
+    "HS78",
+    "HS79",
+    "HS89",
+    "HS90",
+    "HS100",
+    "HS106",
+    "HS110"
+  ],
+  "n_donors": 21,
+  "reference": {
+    "cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
+    "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
+    "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
+    "n_r1_cells": 3150,
+    "pca": {
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+      "explained_variance_ratio_sum": 0.3122588098049164,
+      "n_fit_cells": 3150
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+    "r2_control": {
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+      "coverage": 1.0,
+      "density": 2.678,
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+      "depth_matched": {
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+        "coverage": 1.0,
+        "density": 2.6237142857142857
+      }
+    },
+    "observed_l1_loo_null_mean": 0.20994821515523107
+  },
+  "contrast_definition": {
+    "enabled": false,
+    "reason": "--no-contrast"
+  },
+  "deg_definition": {
+    "enabled": false,
+    "reason": "--no-deg"
+  },
+  "headline": {
+    "lora": {
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+      "coverage_dm": 0.993968253968254,
+      "pb_r_median": 0.9085255634449021,
+      "pb_top1": 0.09523809523809523,
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/scoring_support.json

@@ -0,0 +1,67 @@
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