Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/summary.json +147 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/per_donor.csv +27 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/summary.json +147 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/summary.json
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| 1 |
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{
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| 2 |
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"dataset": "ji2025_chili",
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| 3 |
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"comparison": "fewshot",
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| 4 |
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"draw": 0,
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| 5 |
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"gene_mode": "full",
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| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw0",
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| 7 |
+
"lora_arm": "lora5",
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| 8 |
+
"n_donors": 25,
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| 9 |
+
"contrast": true,
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| 10 |
+
"genes_scoring": 5752,
|
| 11 |
+
"genes_covered_by_Z_all_donors": 5411,
|
| 12 |
+
"bayesprism": {
|
| 13 |
+
"comp_l1": 0.897833546244817,
|
| 14 |
+
"comp_l1_by_variant": {
|
| 15 |
+
"final_cells": 0.897833546244817,
|
| 16 |
+
"first_cells": 1.0604240102209128,
|
| 17 |
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"final_mrna": 0.967617615291296,
|
| 18 |
+
"first_mrna": 1.0838623302535204
|
| 19 |
+
},
|
| 20 |
+
"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.1168,
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| 23 |
+
"B cell": 0.0691,
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| 24 |
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"Monocyte": 0.4223,
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| 25 |
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"NK cell": 0.1651,
|
| 26 |
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"DC": 0.0,
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| 27 |
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"Other": 0.2268
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| 28 |
+
},
|
| 29 |
+
"first_cells": {
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| 30 |
+
"T cell": 0.0411,
|
| 31 |
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"B cell": 0.0849,
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| 32 |
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"Monocyte": 0.3865,
|
| 33 |
+
"NK cell": 0.1589,
|
| 34 |
+
"DC": 0.0017,
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| 35 |
+
"Other": 0.3269
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.0866,
|
| 39 |
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"B cell": 0.062,
|
| 40 |
+
"Monocyte": 0.5081,
|
| 41 |
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"NK cell": 0.136,
|
| 42 |
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"DC": 0.0,
|
| 43 |
+
"Other": 0.2073
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.0306,
|
| 47 |
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"B cell": 0.0759,
|
| 48 |
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"Monocyte": 0.4626,
|
| 49 |
+
"NK cell": 0.1306,
|
| 50 |
+
"DC": 0.0027,
|
| 51 |
+
"Other": 0.2975
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"logfc_r_mean_cp10k": 0.1861628716144019,
|
| 55 |
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"partial_r_mean_cp10k": 0.039991272520911975,
|
| 56 |
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"logfc_r_mean_cp10k_covered_genes": 0.2091092566585711,
|
| 57 |
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"deg_top50_sum": 0,
|
| 58 |
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"deg_top50_sum_covered_genes": 0,
|
| 59 |
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"per_type_logfc_r": {
|
| 60 |
+
"T cell": 0.1547,
|
| 61 |
+
"B cell": 0.0737,
|
| 62 |
+
"Monocyte": 0.3979,
|
| 63 |
+
"NK cell": 0.1183
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.4958,
|
| 68 |
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"B cell": 0.0508,
|
| 69 |
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"Monocyte": 0.2433,
|
| 70 |
+
"NK cell": 0.1669,
|
| 71 |
+
"DC": 0.0128,
|
| 72 |
+
"Other": 0.0303
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.46942970758493824,
|
| 76 |
+
"coverage": 0.6992,
|
| 77 |
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"logfc_r_mean_cp10k": 0.38697985726899736,
|
| 78 |
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"deg_top50_sum": 0,
|
| 79 |
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"partial_r_mean_cp10k": 0.36588903106531123
|
| 80 |
+
},
|
| 81 |
+
"broadcast": {
|
| 82 |
+
"logfc_r_mean_cp10k": 0.21311861411338662,
|
| 83 |
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"logfc_r_mean_cp10k_covered_genes": 0.20508643810380944,
|
| 84 |
+
"deg_top50_sum": 0
|
| 85 |
+
},
|
| 86 |
+
"other_arms": {
|
| 87 |
+
"zs_raw": {
|
| 88 |
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"comp_l1": 0.7400644990694674,
|
| 89 |
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"logfc_r_mean_cp10k": 0.10251919469370015,
|
| 90 |
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"deg_top50_sum": 0
|
| 91 |
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},
|
| 92 |
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"zs_pseudo": {
|
| 93 |
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"comp_l1": 0.16717128996574535,
|
| 94 |
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"logfc_r_mean_cp10k": 0.1840352599240339,
|
| 95 |
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"deg_top50_sum": 0
|
| 96 |
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},
|
| 97 |
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"zs_cal": {
|
| 98 |
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"comp_l1": 0.5151446979886816,
|
| 99 |
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"logfc_r_mean_cp10k": 0.11356580338558689,
|
| 100 |
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"deg_top50_sum": 0
|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"gates": {
|
| 104 |
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"observed_composition_equal": true,
|
| 105 |
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"broadcast_r_equal": true,
|
| 106 |
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"broadcast_deg_equal": true
|
| 107 |
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},
|
| 108 |
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"n_case": 14,
|
| 109 |
+
"n_control": 11,
|
| 110 |
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"deg_per_type": {
|
| 111 |
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"zero_filled": {
|
| 112 |
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"bp": {
|
| 113 |
+
"T cell": 0,
|
| 114 |
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"B cell": 0,
|
| 115 |
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"Monocyte": 0,
|
| 116 |
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"NK cell": 0,
|
| 117 |
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"DC": 0
|
| 118 |
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},
|
| 119 |
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"broadcast": {
|
| 120 |
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"T cell": 0,
|
| 121 |
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"B cell": 0,
|
| 122 |
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"Monocyte": 0,
|
| 123 |
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"NK cell": 0,
|
| 124 |
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"DC": 0
|
| 125 |
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}
|
| 126 |
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},
|
| 127 |
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"covered": {
|
| 128 |
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"bp": {
|
| 129 |
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"T cell": 0,
|
| 130 |
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"B cell": 0,
|
| 131 |
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"Monocyte": 0,
|
| 132 |
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"NK cell": 0,
|
| 133 |
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"DC": 0
|
| 134 |
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},
|
| 135 |
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"broadcast": {
|
| 136 |
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"T cell": 0,
|
| 137 |
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"B cell": 0,
|
| 138 |
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"Monocyte": 0,
|
| 139 |
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"NK cell": 0,
|
| 140 |
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"DC": 0
|
| 141 |
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}
|
| 142 |
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}
|
| 143 |
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},
|
| 144 |
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"tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
|
| 145 |
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"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 146 |
+
"seconds": 2.2
|
| 147 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/contrast.csv
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| 1 |
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genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,3013,0.14385902470036804,0.17723815953863759,0.012693531418005706,0.7663933979992256
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,3013,0.18975288980901228,0.2548071458258705,0.021407951895640154,0.6855447480808746
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3263,0.012601489601407664,0.09853768043196273,-0.07303301944486287,0.6732493452829251
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3263,0.0076709147473655965,0.035183033974984575,-0.03524853476405578,0.8079758646017505
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3157,0.4472219256893019,0.3948466424201932,0.23164862299987138,0.9141723503220914
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3157,0.3761846449901103,0.3639773066663638,0.10215600087980187,0.9702719178081622
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,3047,0.13054980155976853,0.16105690782451637,-0.009190977294992495,0.8410494771375502
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,3047,0.1083070717067309,0.1345214411691737,-0.05618827137186562,0.9429399105645037
|
| 10 |
+
covered,T cell,mean_cp10k,2993,0.14481269979137568,0.16119610386493619,0.02627817820868486,0.8023332750134294
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,2993,0.19188294824152682,0.24290243670844408,0.033797429852410577,0.6926001109476791
|
| 12 |
+
covered,B cell,mean_cp10k,3243,0.012623400774194833,0.08297024700674044,-0.0655331405705284,0.7080081588097471
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,3243,0.007440333160353324,0.02662261183647597,-0.025658488138373334,0.8245625886988099
|
| 14 |
+
covered,Monocyte,mean_cp10k,3136,0.45090745380382113,0.4030790955342959,0.23219990462969006,0.942570373365248
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,3136,0.3771070690759403,0.3589880430197101,0.13673057097548727,0.980354496731957
|
| 16 |
+
covered,NK cell,mean_cp10k,3026,0.13741285537378697,0.15563546969563521,-0.0004201319587955232,0.8841605482773625
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,3026,0.10950660794818536,0.12329735889911264,-0.03228129951098678,0.9604751553374117
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/per_donor.csv
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| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N064_TOL,TOL,1.3678943901336573,1.2209283110854283,1.3707884519194056,1.2323049748384742,0.2949901254336802,0.08067315917578755,0.008079896385487699,0.6517213771016813,0.0060795925599282045,0.013732711265704335,0.044035228182546036,0.5867087733963844,0.6166475903620304,0.1677341873498799,0.25067290420880856,0.27796634588681407,0.07606084867894315,0.00854770441092147,4.808971330736799e-06,0.010008006405124099,0.06731786624816992,0.08356864712863277,0.05044035228182546
|
| 3 |
+
N064_FU1,FU1,1.3121025484317672,1.185897198504746,1.3124220074647448,1.1926880382618323,0.3212552049796094,0.06157920049412849,4.821630911824583e-05,0.6396222365314446,0.0016215885342456696,0.0047676078162974195,0.016527151749302426,0.5163447147624524,0.5500308209754193,0.13865636402661516,0.3098996021963828,0.3382941809700728,0.19167203262502683,0.005661060980231904,4.3332963912306045e-06,0.00472204335694355,0.10489383303255888,0.10685484063270091,0.008800171710667526
|
| 4 |
+
N032_AC,AC,1.3673178196442741,1.2814915846704427,1.3713457041824184,1.2688106104562071,0.1974965986394557,0.0562184385095594,0.01254677243933545,0.5891156462585034,0.015678939777767718,0.028406079524973083,0.10979591836734694,0.4505222218553862,0.4786115858040786,0.17551020408163265,0.18674571292696115,0.2016419056426315,0.04707482993197279,0.011982679717587695,1.4088553690527153e-05,0.025714285714285714,0.27885200721273773,0.27877956803529075,0.0527891156462585
|
| 5 |
+
N038_BC,BC,1.1921262944464206,1.1712087284181802,1.2792287774577293,1.2209263578833598,0.3604198500535523,0.004545163757173267,1.1868879466831336e-05,0.5608711174580507,0.002227491281527926,0.003701162188376949,0.0046411995715815784,0.5138387266089708,0.5398806850447397,0.16565512317029632,0.2566378657401655,0.2404674020152882,0.2170653338093538,0.007408771541212559,9.612497949895404e-06,0.034273473759371655,0.21534198107094993,0.21592926937417842,0.017493752231345947
|
| 6 |
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw1/summary.json
ADDED
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@@ -0,0 +1,147 @@
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| 1 |
+
{
|
| 2 |
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"dataset": "ji2025_chili",
|
| 3 |
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"comparison": "fewshot",
|
| 4 |
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"draw": 1,
|
| 5 |
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"gene_mode": "score",
|
| 6 |
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"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw1",
|
| 7 |
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"lora_arm": "lora5",
|
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"n_donors": 26,
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| 9 |
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"contrast": true,
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| 10 |
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"genes_scoring": 5752,
|
| 11 |
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"genes_covered_by_Z_all_donors": 5642,
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| 12 |
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| 13 |
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"final_cells": 1.0852947355832807,
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"final_mrna": 1.1177013725310994,
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},
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"mean_fraction": {
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"Other": 0.172
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},
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"first_cells": {
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},
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"final_mrna": {
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"first_mrna": {
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"DC": 0.0127,
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