Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3k4,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.19121024802876138,0.2101571185901369,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.07767358743226523,0.03883679371613261,0.10139974392017273,0.09036246295143299,0.25416429198333873,0.06761423735778962,0.3148062586997331
+obs_thin_lora3k4,BD,ifng_response_log2fc_high_vs_other,-0.22365558484024797,-0.20812947944593707,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.05350214492755165,0.026751072463775824,0.06286960812530659,-0.29656083351970897,-0.1818025469494088,-0.30878943656496805,-0.13852173311552787
+obs_thin_lora3k4,BD,ifng_response_c1q_high_minus_other,0.10205246215913452,0.09547429484966058,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.02302566226281359,0.011512831131406795,0.016940768162288733,0.08212239501970986,0.13513886391750707,0.06541349526163372,0.13869142905663534
+obs_thin_lora3k4,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.12929143470185606,-0.13237274074230992,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.04357522766466877,0.021787613832334386,0.03502772722236015,-0.17909150240269586,-0.07332875492010851,-0.19862934584351682,-0.05995352356019529
+obs_thin_lora3k4,BD,proinflammatory_log2fc_high_vs_other,-0.49977424494490874,-0.5116128269465603,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.025317452080433758,0.012658726040216879,0.0157692568810755,-0.5139700609345308,-0.46190126495198386,-0.5400599608611956,-0.45948852902862186
+obs_thin_lora3k4,BD,proinflammatory_c1q_high_minus_other,0.017718705407113962,0.013983813599371939,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.011784781257496676,0.005892390628748338,0.010254609963143597,0.008243644615095302,0.03466354981461667,-0.0010335113786345308,0.03647092219286245
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.18094582634677397,0.1644795648005205,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.05676570664771516,0.02838285332385758,0.03584947097205346,0.13193737460490215,0.26288680118115276,0.09061891965285401,0.27127273304069394
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.1947059155216323,-0.20006391941108942,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.07884547289633946,0.03942273644816973,0.1249587213370092,-0.26648811034423037,-0.11220771292011995,-0.3201666574752834,-0.06924517356798118
+obs_thin_lora3k4,BD,phagocytosis_antigen_c1q_high_minus_other,0.11490822651652974,0.10477811693048406,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.023883529116039238,0.011941764558019619,0.01920782465731405,0.09992383076339739,0.15015284144175345,0.07690420202029227,0.1529122510127672
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9499381711642236,0.8925614371795672,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.27000641659157054,0.13500320829578527,0.20057697037090982,0.6878955317074988,1.3267342785902614,0.5202977097218551,1.3795786326065922
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.7074457502662308,0.6739667166064504,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.26814181018544303,0.13407090509272152,0.23729512961617416,0.42001322743486774,1.0618363404171545,0.28077229370785656,1.134119206824605
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6541451834015526,0.6520561762172125,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.121437820813382,0.060718910406691,0.10300326684181904,0.5088214421610691,0.8036469390107166,0.46091051131692634,0.8473798554861789
+obs_thin_lora3k4,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.26214004094406973,0.1898916641222561,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.15668162909808733,0.07834081454904367,0.09034888536441113,0.17207236689900599,0.49670446863276063,0.012824605129549582,0.5114554767585899
+obs_thin_lora3k4,HC,ifng_response_log2fc_high_vs_other,-0.43005064509508284,-0.4172801022048125,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.26822515441315775,0.13411257720657888,0.2785789423786421,-0.76101286530312,-0.12462951066758628,-0.8568567209182358,-0.003244569271929898
+obs_thin_lora3k4,HC,ifng_response_c1q_high_minus_other,0.1309959604880932,0.13768615814975402,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.03918715274569253,0.019593576372846266,0.05351861416378728,0.08259540221164485,0.16601612344121996,0.06864045575303446,0.19335146522315194
+obs_thin_lora3k4,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.14421935435370226,-0.18295075951278345,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.18963536517796858,0.09481768258898429,0.14076375926378992,-0.33040123000662913,0.11942533161738698,-0.44597153798457867,0.15753282927717416
+obs_thin_lora3k4,HC,proinflammatory_log2fc_high_vs_other,-0.7529577015775133,-0.8194965022767259,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.20236723644915242,0.10118361822457621,0.1790197124279782,-0.9113768297057205,-0.4614609720508811,-1.0749691335515532,-0.4309462696034735
+obs_thin_lora3k4,HC,proinflammatory_c1q_high_minus_other,0.03633212970021282,0.04136890244868817,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.031759133643302795,0.015879566821651397,0.04446514861909687,-0.0021787493693253834,0.06476946327280034,-0.014203739060857416,0.08686799846128307
+obs_thin_lora3k4,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.07584893498182385,0.06838285492826766,0.5,0.0,0.625,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1162931601624297,0.05814658008121485,0.17089254116400945,-0.03829154206119182,0.20492157213195192,-0.10919943396252157,0.2608973039261693
+obs_thin_lora3k4,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.5265107138589085,-0.5603152375418385,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.3082141696930569,0.15410708484652846,0.3494571056965625,-0.8493454556332656,-0.1360669247186913,-1.016948236646786,-0.036073191071031074
+obs_thin_lora3k4,HC,phagocytosis_antigen_c1q_high_minus_other,0.13892927101305028,0.13436725031658764,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02483834233919797,0.012419171169598986,0.021540498598045216,0.11411579843043829,0.17286678498858754,0.09940592560967404,0.1784526164164265
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.6330902894248783,0.6872131558924509,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.31975490837350956,0.15987745418675478,0.2227910684275406,0.1954598032344161,0.9624750426801957,0.12428887605007533,1.1418917027996813
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.27498698340149474,0.38473706924065476,0.75,0.5,0.625,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.5676243991626312,0.2838121995813156,0.43489652930083794,-0.5092769398464744,0.8397507349711439,-0.6282301025505054,1.178204069353495
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5940797246070578,0.6049792510510578,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.03700995158419375,0.018504975792096874,0.023647534487421185,0.5405826208176288,0.625777775508487,0.5351886327681347,0.652970816445981

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_C/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs_thin_lora3k4,PBMC_BD_1,BD,real,489,36,0.0736196319018405,0.4139430689302318,0.3209265413724642,0.09301652755776763,0.25969458844684423,0.24814386395631446,0.011550724490529768,0.6552297366957055,0.5553059059323081,0.09992383076339739,0.25416429198333873,-0.13809743431011878,0.13193737460490215,0.6878955317074988,-0.18534278845744936,-0.5139700609345308,-0.26648811034423037,0.42001322743486774,2.0399881240954407,1.5311666819343717,0.5088214421610691,-0.40345806997221645
+obs_thin_lora3k4,PBMC_BD_2,BD,real,946,59,0.06236786469344609,0.4281928300560288,0.3302607679144753,0.09793206214155353,0.2328954672663397,0.21647856455812559,0.01641690270821411,0.6679991593432582,0.5587873277542907,0.10921183158896741,0.16985759414867269,-0.17909150240269586,0.16240482191519331,0.9198062929463799,-0.1818025469494088,-0.5134475322035195,-0.14247150475710169,0.7251929508535186,2.046243924634017,1.4137190101697426,0.6325249144642744,-0.345732196117175
+obs_thin_lora3k4,PBMC_BD_3,BD,real,735,35,0.047619047619047616,0.4317877698826846,0.3496653748629747,0.08212239501970986,0.2623910087031975,0.2541473640881022,0.008243644615095302,0.6418965020127345,0.5415520997407338,0.1003444022720007,0.09036246295143299,-0.12664804717450104,0.26288680118115276,0.8653165814127545,-0.29656083351970897,-0.46190126495198386,-0.11220771292011995,0.6227404823593821,1.9907635259688536,1.3191760879987031,0.6715874379701505,-0.4127677376125613
+obs_thin_lora3k4,PBMC_BD_4,BD,real,1402,35,0.024964336661911554,0.433069234616818,0.29793037069931094,0.13513886391750707,0.2507407377389109,0.21607718792429426,0.03466354981461667,0.6434378514712821,0.4932850100295286,0.15015284144175345,0.2504566430316011,-0.07332875492010851,0.16655430768584772,1.3267342785902614,-0.23091617043442478,-0.509778121689601,-0.25765633406507715,1.0618363404171545,2.092462148750033,1.2888152097393164,0.8036469390107166,-0.49876785540607127
+obs_thin_lora3k4,PBMC_HC_1,HC,real,272,19,0.06985294117647059,0.4942629664233896,0.32824684298216966,0.16601612344121996,0.30385996345909616,0.23909050018629582,0.06476946327280034,0.7268050298721913,0.5878692782499317,0.13893575162225957,0.17207236689900599,-0.33040123000662913,-0.005009986815548024,0.7079046616031814,-0.3376246997249734,-0.775136003600547,-0.4462235888965592,0.44983014297161034,1.8951395386854086,1.3545569178677799,0.5405826208176288,-0.4491912081463531
+obs_thin_lora3k4,PBMC_HC_2,HC,real,743,16,0.021534320323014805,0.4163961755625738,0.33380077335092895,0.08259540221164485,0.2574317703451715,0.2596105197144969,-0.0021787493693253834,0.6572407591803495,0.5274420101694338,0.1297987490109157,0.19601890407623776,-0.2018221720846407,-0.03829154206119182,0.6665216501817204,-0.49693550468465164,-0.8638570009529047,-0.6744068861871177,0.3196439955096992,2.02188214660074,1.4184687260928202,0.60341342050792,-0.6919072028819988
+obs_thin_lora3k4,PBMC_HC_3,HC,real,1306,69,0.052833078101071976,0.4441841435602902,0.32827360798146515,0.11591053557882502,0.23908653602580512,0.2162030305494939,0.02288350547631121,0.664542345154516,0.5504265467240778,0.11411579843043829,0.18376442416827446,-0.16407934694092616,0.14177569667208334,0.9624750426801957,-0.12462951066758628,-0.4614609720508811,-0.1360669247186913,0.8397507349711439,2.0531675700400287,1.4466224884458332,0.6065450815941955,-0.3139970025507644
+obs_thin_lora3k4,PBMC_HC_4,HC,real,473,12,0.02536997885835095,0.4293124835488913,0.2698507028282083,0.159461780720683,0.260608646625461,0.2007543472043959,0.05985429942106513,0.6783922474314507,0.5055254624428631,0.17286678498858754,0.49670446863276063,0.11942533161738698,0.20492157213195192,0.1954598032344161,-0.76101286530312,-0.9113768297057205,-0.8493454556332656,-0.5092769398464744,1.8808234343047008,1.2550456587962138,0.625777775508487,-1.0349196650279067

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_D/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3k4,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.18194472325711547,0.18183016077766032,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.04319596696441763,0.021597983482208816,0.06758157649708818,0.1389674235949147,0.22515114787822654,0.11321030052258148,0.2506791459916495
+obs_thin_lora3k4,BD,ifng_response_log2fc_high_vs_other,-0.19230799690211034,-0.19046330339021775,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.01579474859113495,0.007897374295567475,0.011508441289263677,-0.2132765332046454,-0.17502884762336052,-0.21744096655048156,-0.16717502725373912
+obs_thin_lora3k4,BD,ifng_response_c1q_high_minus_other,0.08275711289056424,0.08416735896238683,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.010672877338539801,0.0053364386692699006,0.011589400564138694,0.06893710995794466,0.09375662367953863,0.06577418336417314,0.09974004241695535
+obs_thin_lora3k4,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.10807149506157199,-0.13934119982273185,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.07334468006229293,0.036672340031146465,0.039329663657747704,-0.15499098207176018,0.0013874014709359154,-0.22477924809980188,0.008636257976657888
+obs_thin_lora3k4,BD,proinflammatory_log2fc_high_vs_other,-0.4461149593438636,-0.45952658972238647,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.0579055643282618,0.0289527821641309,0.047515841836040906,-0.5004307383250921,-0.36497591960558917,-0.538255633969786,-0.3539742847179412
+obs_thin_lora3k4,BD,proinflammatory_c1q_high_minus_other,0.006156916943757501,0.0066905540294959764,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.00602459058963298,0.00301229529481649,0.006748157283540487,-0.0013914248464076961,0.012637984562445748,-0.0034295510876547353,0.015743384975169736
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.19882000267214892,0.19272441749526942,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.0471938347200814,0.0235969173600407,0.039807200601082615,0.1482770843068677,0.2615540913911892,0.1237240802036024,0.2739159251406954
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_D/sample.csv

@@ -0,0 +1,9 @@
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