Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
ffbcb4a
·
verified ·
1 Parent(s): a4a73b6

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/SUMMARY.md +12 -0
  2. paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/folds.csv +91 -0
  3. paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/pooled.csv +31 -0
  4. paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/validation/check_units_server1_budget_plain_20261002.json +1910 -0
paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/SUMMARY.md ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # scSemiProfiler vs LoRA with the same training pairs (5-fold CV and equal pair budget)
2
+
3
+ Pooled = one scoring call over every donor (each scored by the fold model that never saw it). Cells: LoRA / scSemiProfiler; bold = better. Folds won = folds in which LoRA is better.
4
+
5
+ Not scored yet: Sepsis A all training pairs, Sepsis B 5 pairs, Sepsis B 10 pairs, Sepsis B 20 pairs, Sepsis B 40 pairs, Imperial A all training pairs, Giroux A all training pairs
6
+
7
+ - **ImMicro, all training pairs** — L1 **0.162** / 0.217; precision **0.924** / 0.505; coverage **0.784** / 0.038 (folds won by LoRA: L1 5/5, precision 5/5, coverage 5/5)
8
+ - **ImMicro, 5 pairs** — L1 **0.171** / 0.218; precision **0.946** / 0.501; coverage **0.839** / 0.038 (folds won by LoRA: L1 5/5, precision 5/5, coverage 5/5)
9
+ - **ImMicro, 10 pairs** — L1 **0.188** / 0.227; precision **0.938** / 0.508; coverage **0.786** / 0.038 (folds won by LoRA: L1 5/5, precision 5/5, coverage 5/5)
10
+ - **ImMicro, 20 pairs** — L1 **0.172** / 0.223; precision **0.920** / 0.510; coverage **0.755** / 0.037 (folds won by LoRA: L1 4/5, precision 5/5, coverage 5/5)
11
+ - **ImMicro, 40 pairs** — L1 **0.171** / 0.221; precision **0.923** / 0.506; coverage **0.778** / 0.038 (folds won by LoRA: L1 5/5, precision 5/5, coverage 5/5)
12
+ - **Ji, all training pairs** — L1 **0.504** / 0.575; precision **0.971** / 0.858; coverage **0.857** / 0.167; logFC r **0.479** / 0.273; DEG **15** / 0 (folds won by LoRA: L1 4/5, precision 5/5, coverage 5/5)
paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/folds.csv ADDED
@@ -0,0 +1,91 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,exp,pairs,fold,metric,lora,scsemi,lower_better
2
+ immicro,A,all training pairs,0,comp_l1,0.15285900890637347,0.2004905437372287,True
3
+ immicro,A,all training pairs,0,precision,0.9915151515151515,0.7606060606060606,False
4
+ immicro,A,all training pairs,0,coverage,0.9148484848484848,0.0890909090909091,False
5
+ immicro,A,all training pairs,1,comp_l1,0.17195658203874714,0.2117808524138249,True
6
+ immicro,A,all training pairs,1,precision,0.9893939393939394,0.7984848484848485,False
7
+ immicro,A,all training pairs,1,coverage,0.9142424242424242,0.10121212121212121,False
8
+ immicro,A,all training pairs,2,comp_l1,0.17232269010395024,0.22202490820818452,True
9
+ immicro,A,all training pairs,2,precision,0.9841269841269841,0.7955555555555556,False
10
+ immicro,A,all training pairs,2,coverage,0.9085714285714286,0.09587301587301587,False
11
+ immicro,A,all training pairs,3,comp_l1,0.17526497884508427,0.256741013430284,True
12
+ immicro,A,all training pairs,3,precision,0.9885714285714285,0.7406349206349206,False
13
+ immicro,A,all training pairs,3,coverage,0.9292063492063493,0.09238095238095238,False
14
+ immicro,A,all training pairs,4,comp_l1,0.13623826792869642,0.18924759662226268,True
15
+ immicro,A,all training pairs,4,precision,0.9895238095238095,0.7749206349206349,False
16
+ immicro,A,all training pairs,4,coverage,0.9257142857142857,0.09174603174603174,False
17
+ immicro,B,5 pairs,0,comp_l1,0.13797873064364488,0.19911898161909045,True
18
+ immicro,B,5 pairs,0,precision,0.9903030303030304,0.73,False
19
+ immicro,B,5 pairs,0,coverage,0.9342424242424242,0.0890909090909091,False
20
+ immicro,B,5 pairs,1,comp_l1,0.18947649451061926,0.21498243670633854,True
21
+ immicro,B,5 pairs,1,precision,0.990909090909091,0.7996969696969697,False
22
+ immicro,B,5 pairs,1,coverage,0.8739393939393939,0.10848484848484849,False
23
+ immicro,B,5 pairs,2,comp_l1,0.1985847366455935,0.2318686211356905,True
24
+ immicro,B,5 pairs,2,precision,0.9920634920634921,0.78,False
25
+ immicro,B,5 pairs,2,coverage,0.9231746031746032,0.0892063492063492,False
26
+ immicro,B,5 pairs,3,comp_l1,0.18079938196761822,0.27359895926835637,True
27
+ immicro,B,5 pairs,3,precision,0.9873015873015873,0.7463492063492063,False
28
+ immicro,B,5 pairs,3,coverage,0.9482539682539682,0.08984126984126985,False
29
+ immicro,B,5 pairs,4,comp_l1,0.14540971863420987,0.16995086783143046,True
30
+ immicro,B,5 pairs,4,precision,0.9901587301587301,0.7609523809523809,False
31
+ immicro,B,5 pairs,4,coverage,0.9558730158730159,0.09492063492063492,False
32
+ immicro,B,10 pairs,0,comp_l1,0.19516240460979165,0.21990507666477058,True
33
+ immicro,B,10 pairs,0,precision,0.9912121212121212,0.7339393939393939,False
34
+ immicro,B,10 pairs,0,coverage,0.8360606060606061,0.0890909090909091,False
35
+ immicro,B,10 pairs,1,comp_l1,0.19090067905658836,0.21293787995677754,True
36
+ immicro,B,10 pairs,1,precision,0.9927272727272727,0.7972727272727272,False
37
+ immicro,B,10 pairs,1,coverage,0.8809090909090909,0.10575757575757576,False
38
+ immicro,B,10 pairs,2,comp_l1,0.1911152437735686,0.2449747568869672,True
39
+ immicro,B,10 pairs,2,precision,0.9936507936507937,0.7838095238095238,False
40
+ immicro,B,10 pairs,2,coverage,0.9228571428571428,0.08507936507936507,False
41
+ immicro,B,10 pairs,3,comp_l1,0.1946914763625523,0.2910512713443036,True
42
+ immicro,B,10 pairs,3,precision,0.9882539682539683,0.7288888888888889,False
43
+ immicro,B,10 pairs,3,coverage,0.9215873015873016,0.08952380952380952,False
44
+ immicro,B,10 pairs,4,comp_l1,0.16648880415440154,0.16826207091532924,True
45
+ immicro,B,10 pairs,4,precision,0.9806349206349206,0.7771428571428571,False
46
+ immicro,B,10 pairs,4,coverage,0.9288888888888889,0.10031746031746032,False
47
+ immicro,B,20 pairs,0,comp_l1,0.19481354777043236,0.19398196521690061,True
48
+ immicro,B,20 pairs,0,precision,0.9884848484848485,0.7518181818181818,False
49
+ immicro,B,20 pairs,0,coverage,0.8784848484848485,0.08878787878787879,False
50
+ immicro,B,20 pairs,1,comp_l1,0.18004892596807956,0.216471191461096,True
51
+ immicro,B,20 pairs,1,precision,0.9906060606060606,0.8,False
52
+ immicro,B,20 pairs,1,coverage,0.8884848484848484,0.10151515151515152,False
53
+ immicro,B,20 pairs,2,comp_l1,0.1585488960159271,0.23233103601452465,True
54
+ immicro,B,20 pairs,2,precision,0.9892063492063492,0.8006349206349206,False
55
+ immicro,B,20 pairs,2,coverage,0.9114285714285715,0.08793650793650794,False
56
+ immicro,B,20 pairs,3,comp_l1,0.1789141732163874,0.2844047785791519,True
57
+ immicro,B,20 pairs,3,precision,0.9812698412698413,0.7377777777777778,False
58
+ immicro,B,20 pairs,3,coverage,0.9142857142857143,0.09047619047619047,False
59
+ immicro,B,20 pairs,4,comp_l1,0.14152133883508156,0.19094952324261477,True
60
+ immicro,B,20 pairs,4,precision,0.9853968253968254,0.7736507936507937,False
61
+ immicro,B,20 pairs,4,coverage,0.8990476190476191,0.08761904761904762,False
62
+ immicro,B,40 pairs,0,comp_l1,0.17416778726176152,0.20257985398554076,True
63
+ immicro,B,40 pairs,0,precision,0.9903030303030304,0.7563636363636363,False
64
+ immicro,B,40 pairs,0,coverage,0.899090909090909,0.08484848484848485,False
65
+ immicro,B,40 pairs,1,comp_l1,0.17611023522128552,0.21292158294671662,True
66
+ immicro,B,40 pairs,1,precision,0.9881818181818182,0.7660606060606061,False
67
+ immicro,B,40 pairs,1,coverage,0.9078787878787878,0.1096969696969697,False
68
+ immicro,B,40 pairs,2,comp_l1,0.1545461562937802,0.2566607134496428,True
69
+ immicro,B,40 pairs,2,precision,0.9863492063492063,0.7768253968253969,False
70
+ immicro,B,40 pairs,2,coverage,0.8955555555555555,0.09111111111111111,False
71
+ immicro,B,40 pairs,3,comp_l1,0.17825858837145375,0.25118359445476557,True
72
+ immicro,B,40 pairs,3,precision,0.9844444444444445,0.7415873015873016,False
73
+ immicro,B,40 pairs,3,coverage,0.939047619047619,0.0853968253968254,False
74
+ immicro,B,40 pairs,4,comp_l1,0.17083559357655562,0.18668832998237078,True
75
+ immicro,B,40 pairs,4,precision,0.9885714285714285,0.7546031746031746,False
76
+ immicro,B,40 pairs,4,coverage,0.9276190476190476,0.1019047619047619,False
77
+ ji2025_chili,A,all training pairs,0,comp_l1,0.5111024560065739,0.7399360955450431,True
78
+ ji2025_chili,A,all training pairs,0,precision,0.9961904761904762,0.9914285714285714,False
79
+ ji2025_chili,A,all training pairs,0,coverage,0.8819047619047619,0.2733333333333333,False
80
+ ji2025_chili,A,all training pairs,1,comp_l1,0.4930965762981669,0.6438583419798901,True
81
+ ji2025_chili,A,all training pairs,1,precision,1.0,0.9933333333333333,False
82
+ ji2025_chili,A,all training pairs,1,coverage,0.9211111111111111,0.3611111111111111,False
83
+ ji2025_chili,A,all training pairs,2,comp_l1,0.514803408320252,0.41253554391105257,True
84
+ ji2025_chili,A,all training pairs,2,precision,0.9888888888888889,0.9222222222222223,False
85
+ ji2025_chili,A,all training pairs,2,coverage,0.8666666666666667,0.34555555555555556,False
86
+ ji2025_chili,A,all training pairs,3,comp_l1,0.4370323436314371,0.46897208354260644,True
87
+ ji2025_chili,A,all training pairs,3,precision,1.0,0.9866666666666667,False
88
+ ji2025_chili,A,all training pairs,3,coverage,0.9591666666666666,0.355,False
89
+ ji2025_chili,A,all training pairs,4,comp_l1,0.6062129499370801,0.6326376399463818,True
90
+ ji2025_chili,A,all training pairs,4,precision,0.9966666666666667,0.9222222222222223,False
91
+ ji2025_chili,A,all training pairs,4,coverage,0.9933333333333333,0.3711111111111111,False
paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/analysis/cv_budget_20261005/pooled.csv ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,exp,pairs,metric,lora,scsemi,lower_better
2
+ immicro,A,all training pairs,comp_l1,0.16172890350786212,0.2170087237986556,True
3
+ immicro,A,all training pairs,precision,0.9241121495327103,0.5054205607476635,False
4
+ immicro,A,all training pairs,coverage,0.7842990654205607,0.03844236760124611,False
5
+ immicro,A,all training pairs,contrast_mean_cp10k_r_gen,,,False
6
+ immicro,A,all training pairs,deg_top50_sum,,,False
7
+ immicro,B,5 pairs,comp_l1,0.17145118443734877,0.21844931529389827,True
8
+ immicro,B,5 pairs,precision,0.9462928348909657,0.5013707165109035,False
9
+ immicro,B,5 pairs,coverage,0.839190031152648,0.038193146417445485,False
10
+ immicro,B,5 pairs,contrast_mean_cp10k_r_gen,,,False
11
+ immicro,B,5 pairs,deg_top50_sum,,,False
12
+ immicro,B,10 pairs,comp_l1,0.18788133961403,0.22693199886759646,True
13
+ immicro,B,10 pairs,precision,0.9381308411214954,0.5083489096573208,False
14
+ immicro,B,10 pairs,coverage,0.7856697819314642,0.038006230529595016,False
15
+ immicro,B,10 pairs,contrast_mean_cp10k_r_gen,,,False
16
+ immicro,B,10 pairs,deg_top50_sum,,,False
17
+ immicro,B,20 pairs,comp_l1,0.17232428387355106,0.22324856671652038,True
18
+ immicro,B,20 pairs,precision,0.9204361370716511,0.5099065420560748,False
19
+ immicro,B,20 pairs,coverage,0.755202492211838,0.03719626168224299,False
20
+ immicro,B,20 pairs,contrast_mean_cp10k_r_gen,,,False
21
+ immicro,B,20 pairs,deg_top50_sum,,,False
22
+ immicro,B,40 pairs,comp_l1,0.17138488720357878,0.221315298938025,True
23
+ immicro,B,40 pairs,precision,0.9229283489096574,0.505607476635514,False
24
+ immicro,B,40 pairs,coverage,0.7784423676012461,0.03844236760124611,False
25
+ immicro,B,40 pairs,contrast_mean_cp10k_r_gen,,,False
26
+ immicro,B,40 pairs,deg_top50_sum,,,False
27
+ ji2025_chili,A,all training pairs,comp_l1,0.5044992874562503,0.575388570715078,True
28
+ ji2025_chili,A,all training pairs,precision,0.9709090909090909,0.857979797979798,False
29
+ ji2025_chili,A,all training pairs,coverage,0.8569696969696969,0.16686868686868686,False
30
+ ji2025_chili,A,all training pairs,contrast_mean_cp10k_r_gen,0.47928798340225065,0.2730887293849816,False
31
+ ji2025_chili,A,all training pairs,deg_top50_sum,15.0,0.0,False
paper-releases/pbisc-diffusion/updates/20261005T121346Z-scsemi-cv-budget-interim/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scsemi/validation/check_units_server1_budget_plain_20261002.json ADDED
@@ -0,0 +1,1910 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "written_utc": "2026-10-01T23:56:01.280789+00:00",
3
+ "host": "spark-fa6b",
4
+ "queues": [
5
+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt"
6
+ ],
7
+ "all_ok": true,
8
+ "failures": [],
9
+ "totals": {
10
+ "units": 40,
11
+ "gpu_hours": 99.7,
12
+ "pretrain_hours": 77.3,
13
+ "infer_hours": 22.4,
14
+ "cpu_prepare_hours": 2.4
15
+ },
16
+ "cost_model": {
17
+ "pretrain_s_per_cell": 0.0488,
18
+ "target_s": [
19
+ 8.0,
20
+ 0.0188
21
+ ],
22
+ "prep_s_per_cell": 0.0015,
23
+ "ckpt_mb": 17.7,
24
+ "semi_mb": 21.3,
25
+ "rep_sc_kb_per_cell": 3.3,
26
+ "geneset_scores_kb_per_cell": 23.4
27
+ },
28
+ "units": [
29
+ {
30
+ "line": "budget|immicro|0|lean_hvset,clean_prepared,offload|5",
31
+ "mode": "budget",
32
+ "ds": "immicro",
33
+ "fold": 0,
34
+ "opts": [
35
+ "lean_hvset",
36
+ "clean_prepared",
37
+ "offload"
38
+ ],
39
+ "n": 5,
40
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
41
+ "builder_ok": true,
42
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold0/n5",
43
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold0/scsemi_n5__raw.npz",
44
+ "n_reps": 12,
45
+ "n_targets": 22,
46
+ "n_rep_cells": 46231,
47
+ "modeled_genes": 5508,
48
+ "equals_scorer_genes": true,
49
+ "depth": 1903.0,
50
+ "work_state": "absent",
51
+ "output_exists": false,
52
+ "output_validated": false,
53
+ "budget": {
54
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n5/RUN.json",
55
+ "n_train_rows": 5,
56
+ "n_inner_val_rows": 7
57
+ },
58
+ "reps_equal_lora_fit_rows": true,
59
+ "targets_per_rep_max": 5,
60
+ "gpu_hours": {
61
+ "pretrain": 0.63,
62
+ "infer": 0.46,
63
+ "total": 1.09
64
+ },
65
+ "cpu_prepare_hours": 0.02,
66
+ "disk_gb": {
67
+ "transient_sample_sc": 3.6,
68
+ "transient_geneset_scores": 1.1,
69
+ "persistent_inputs": 0.2,
70
+ "persistent_pretrain_ckpts": 0.4,
71
+ "persistent_target_models": 0.5
72
+ },
73
+ "largest_rep_cells": 5035,
74
+ "check_seconds": 1.9
75
+ },
76
+ {
77
+ "line": "budget|immicro|1|lean_hvset,clean_prepared,offload|5",
78
+ "mode": "budget",
79
+ "ds": "immicro",
80
+ "fold": 1,
81
+ "opts": [
82
+ "lean_hvset",
83
+ "clean_prepared",
84
+ "offload"
85
+ ],
86
+ "n": 5,
87
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
88
+ "builder_ok": true,
89
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold1/n5",
90
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold1/scsemi_n5__raw.npz",
91
+ "n_reps": 12,
92
+ "n_targets": 22,
93
+ "n_rep_cells": 44721,
94
+ "modeled_genes": 5508,
95
+ "equals_scorer_genes": true,
96
+ "depth": 1971.0,
97
+ "work_state": "absent",
98
+ "output_exists": false,
99
+ "output_validated": false,
100
+ "budget": {
101
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n5/RUN.json",
102
+ "n_train_rows": 5,
103
+ "n_inner_val_rows": 7
104
+ },
105
+ "reps_equal_lora_fit_rows": true,
106
+ "targets_per_rep_max": 7,
107
+ "gpu_hours": {
108
+ "pretrain": 0.61,
109
+ "infer": 0.51,
110
+ "total": 1.11
111
+ },
112
+ "cpu_prepare_hours": 0.02,
113
+ "disk_gb": {
114
+ "transient_sample_sc": 3.4,
115
+ "transient_geneset_scores": 1.0,
116
+ "persistent_inputs": 0.1,
117
+ "persistent_pretrain_ckpts": 0.4,
118
+ "persistent_target_models": 0.5
119
+ },
120
+ "largest_rep_cells": 4574,
121
+ "check_seconds": 1.2
122
+ },
123
+ {
124
+ "line": "budget|immicro|2|lean_hvset,clean_prepared,offload|5",
125
+ "mode": "budget",
126
+ "ds": "immicro",
127
+ "fold": 2,
128
+ "opts": [
129
+ "lean_hvset",
130
+ "clean_prepared",
131
+ "offload"
132
+ ],
133
+ "n": 5,
134
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
135
+ "builder_ok": true,
136
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold2/n5",
137
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold2/scsemi_n5__raw.npz",
138
+ "n_reps": 12,
139
+ "n_targets": 21,
140
+ "n_rep_cells": 44469,
141
+ "modeled_genes": 5508,
142
+ "equals_scorer_genes": true,
143
+ "depth": 1982.0,
144
+ "work_state": "absent",
145
+ "output_exists": false,
146
+ "output_validated": false,
147
+ "budget": {
148
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n5/RUN.json",
149
+ "n_train_rows": 5,
150
+ "n_inner_val_rows": 7
151
+ },
152
+ "reps_equal_lora_fit_rows": true,
153
+ "targets_per_rep_max": 5,
154
+ "gpu_hours": {
155
+ "pretrain": 0.6,
156
+ "infer": 0.46,
157
+ "total": 1.06
158
+ },
159
+ "cpu_prepare_hours": 0.02,
160
+ "disk_gb": {
161
+ "transient_sample_sc": 3.5,
162
+ "transient_geneset_scores": 1.0,
163
+ "persistent_inputs": 0.1,
164
+ "persistent_pretrain_ckpts": 0.4,
165
+ "persistent_target_models": 0.4
166
+ },
167
+ "largest_rep_cells": 6447,
168
+ "check_seconds": 1.2
169
+ },
170
+ {
171
+ "line": "budget|immicro|3|lean_hvset,clean_prepared,offload|5",
172
+ "mode": "budget",
173
+ "ds": "immicro",
174
+ "fold": 3,
175
+ "opts": [
176
+ "lean_hvset",
177
+ "clean_prepared",
178
+ "offload"
179
+ ],
180
+ "n": 5,
181
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
182
+ "builder_ok": true,
183
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold3/n5",
184
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold3/scsemi_n5__raw.npz",
185
+ "n_reps": 12,
186
+ "n_targets": 21,
187
+ "n_rep_cells": 45352,
188
+ "modeled_genes": 5508,
189
+ "equals_scorer_genes": true,
190
+ "depth": 2032.0,
191
+ "work_state": "absent",
192
+ "output_exists": false,
193
+ "output_validated": false,
194
+ "budget": {
195
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n5/RUN.json",
196
+ "n_train_rows": 5,
197
+ "n_inner_val_rows": 7
198
+ },
199
+ "reps_equal_lora_fit_rows": true,
200
+ "targets_per_rep_max": 4,
201
+ "gpu_hours": {
202
+ "pretrain": 0.61,
203
+ "infer": 0.46,
204
+ "total": 1.07
205
+ },
206
+ "cpu_prepare_hours": 0.02,
207
+ "disk_gb": {
208
+ "transient_sample_sc": 3.6,
209
+ "transient_geneset_scores": 1.1,
210
+ "persistent_inputs": 0.1,
211
+ "persistent_pretrain_ckpts": 0.4,
212
+ "persistent_target_models": 0.4
213
+ },
214
+ "largest_rep_cells": 6549,
215
+ "check_seconds": 1.2
216
+ },
217
+ {
218
+ "line": "budget|immicro|4|lean_hvset,clean_prepared,offload|5",
219
+ "mode": "budget",
220
+ "ds": "immicro",
221
+ "fold": 4,
222
+ "opts": [
223
+ "lean_hvset",
224
+ "clean_prepared",
225
+ "offload"
226
+ ],
227
+ "n": 5,
228
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
229
+ "builder_ok": true,
230
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold4/n5",
231
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold4/scsemi_n5__raw.npz",
232
+ "n_reps": 12,
233
+ "n_targets": 21,
234
+ "n_rep_cells": 40795,
235
+ "modeled_genes": 5508,
236
+ "equals_scorer_genes": true,
237
+ "depth": 1987.0,
238
+ "work_state": "absent",
239
+ "output_exists": false,
240
+ "output_validated": false,
241
+ "budget": {
242
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n5/RUN.json",
243
+ "n_train_rows": 5,
244
+ "n_inner_val_rows": 7
245
+ },
246
+ "reps_equal_lora_fit_rows": true,
247
+ "targets_per_rep_max": 6,
248
+ "gpu_hours": {
249
+ "pretrain": 0.55,
250
+ "infer": 0.45,
251
+ "total": 1.0
252
+ },
253
+ "cpu_prepare_hours": 0.02,
254
+ "disk_gb": {
255
+ "transient_sample_sc": 3.1,
256
+ "transient_geneset_scores": 1.0,
257
+ "persistent_inputs": 0.1,
258
+ "persistent_pretrain_ckpts": 0.4,
259
+ "persistent_target_models": 0.4
260
+ },
261
+ "largest_rep_cells": 4520,
262
+ "check_seconds": 1.2
263
+ },
264
+ {
265
+ "line": "budget|immicro|0|lean_hvset,clean_prepared,offload|10",
266
+ "mode": "budget",
267
+ "ds": "immicro",
268
+ "fold": 0,
269
+ "opts": [
270
+ "lean_hvset",
271
+ "clean_prepared",
272
+ "offload"
273
+ ],
274
+ "n": 10,
275
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
276
+ "builder_ok": true,
277
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold0/n10",
278
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold0/scsemi_n10__raw.npz",
279
+ "n_reps": 17,
280
+ "n_targets": 22,
281
+ "n_rep_cells": 64050,
282
+ "modeled_genes": 5508,
283
+ "equals_scorer_genes": true,
284
+ "depth": 1889.0,
285
+ "work_state": "absent",
286
+ "output_exists": false,
287
+ "output_validated": false,
288
+ "budget": {
289
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n10/RUN.json",
290
+ "n_train_rows": 10,
291
+ "n_inner_val_rows": 7
292
+ },
293
+ "reps_equal_lora_fit_rows": true,
294
+ "targets_per_rep_max": 4,
295
+ "gpu_hours": {
296
+ "pretrain": 0.87,
297
+ "infer": 0.45,
298
+ "total": 1.32
299
+ },
300
+ "cpu_prepare_hours": 0.03,
301
+ "disk_gb": {
302
+ "transient_sample_sc": 4.9,
303
+ "transient_geneset_scores": 1.5,
304
+ "persistent_inputs": 0.2,
305
+ "persistent_pretrain_ckpts": 0.6,
306
+ "persistent_target_models": 0.5
307
+ },
308
+ "largest_rep_cells": 5035,
309
+ "check_seconds": 1.2
310
+ },
311
+ {
312
+ "line": "budget|immicro|1|lean_hvset,clean_prepared,offload|10",
313
+ "mode": "budget",
314
+ "ds": "immicro",
315
+ "fold": 1,
316
+ "opts": [
317
+ "lean_hvset",
318
+ "clean_prepared",
319
+ "offload"
320
+ ],
321
+ "n": 10,
322
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
323
+ "builder_ok": true,
324
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold1/n10",
325
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold1/scsemi_n10__raw.npz",
326
+ "n_reps": 17,
327
+ "n_targets": 22,
328
+ "n_rep_cells": 62566,
329
+ "modeled_genes": 5508,
330
+ "equals_scorer_genes": true,
331
+ "depth": 1957.0,
332
+ "work_state": "absent",
333
+ "output_exists": false,
334
+ "output_validated": false,
335
+ "budget": {
336
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n10/RUN.json",
337
+ "n_train_rows": 10,
338
+ "n_inner_val_rows": 7
339
+ },
340
+ "reps_equal_lora_fit_rows": true,
341
+ "targets_per_rep_max": 6,
342
+ "gpu_hours": {
343
+ "pretrain": 0.85,
344
+ "infer": 0.5,
345
+ "total": 1.35
346
+ },
347
+ "cpu_prepare_hours": 0.03,
348
+ "disk_gb": {
349
+ "transient_sample_sc": 4.8,
350
+ "transient_geneset_scores": 1.5,
351
+ "persistent_inputs": 0.2,
352
+ "persistent_pretrain_ckpts": 0.6,
353
+ "persistent_target_models": 0.5
354
+ },
355
+ "largest_rep_cells": 4574,
356
+ "check_seconds": 1.3
357
+ },
358
+ {
359
+ "line": "budget|immicro|2|lean_hvset,clean_prepared,offload|10",
360
+ "mode": "budget",
361
+ "ds": "immicro",
362
+ "fold": 2,
363
+ "opts": [
364
+ "lean_hvset",
365
+ "clean_prepared",
366
+ "offload"
367
+ ],
368
+ "n": 10,
369
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
370
+ "builder_ok": true,
371
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold2/n10",
372
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold2/scsemi_n10__raw.npz",
373
+ "n_reps": 17,
374
+ "n_targets": 21,
375
+ "n_rep_cells": 59672,
376
+ "modeled_genes": 5508,
377
+ "equals_scorer_genes": true,
378
+ "depth": 2040.0,
379
+ "work_state": "absent",
380
+ "output_exists": false,
381
+ "output_validated": false,
382
+ "budget": {
383
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n10/RUN.json",
384
+ "n_train_rows": 10,
385
+ "n_inner_val_rows": 7
386
+ },
387
+ "reps_equal_lora_fit_rows": true,
388
+ "targets_per_rep_max": 4,
389
+ "gpu_hours": {
390
+ "pretrain": 0.81,
391
+ "infer": 0.45,
392
+ "total": 1.26
393
+ },
394
+ "cpu_prepare_hours": 0.02,
395
+ "disk_gb": {
396
+ "transient_sample_sc": 4.6,
397
+ "transient_geneset_scores": 1.4,
398
+ "persistent_inputs": 0.2,
399
+ "persistent_pretrain_ckpts": 0.6,
400
+ "persistent_target_models": 0.4
401
+ },
402
+ "largest_rep_cells": 6447,
403
+ "check_seconds": 1.2
404
+ },
405
+ {
406
+ "line": "budget|immicro|3|lean_hvset,clean_prepared,offload|10",
407
+ "mode": "budget",
408
+ "ds": "immicro",
409
+ "fold": 3,
410
+ "opts": [
411
+ "lean_hvset",
412
+ "clean_prepared",
413
+ "offload"
414
+ ],
415
+ "n": 10,
416
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
417
+ "builder_ok": true,
418
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold3/n10",
419
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold3/scsemi_n10__raw.npz",
420
+ "n_reps": 17,
421
+ "n_targets": 21,
422
+ "n_rep_cells": 61921,
423
+ "modeled_genes": 5508,
424
+ "equals_scorer_genes": true,
425
+ "depth": 1934.0,
426
+ "work_state": "absent",
427
+ "output_exists": false,
428
+ "output_validated": false,
429
+ "budget": {
430
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n10/RUN.json",
431
+ "n_train_rows": 10,
432
+ "n_inner_val_rows": 7
433
+ },
434
+ "reps_equal_lora_fit_rows": true,
435
+ "targets_per_rep_max": 4,
436
+ "gpu_hours": {
437
+ "pretrain": 0.84,
438
+ "infer": 0.46,
439
+ "total": 1.3
440
+ },
441
+ "cpu_prepare_hours": 0.03,
442
+ "disk_gb": {
443
+ "transient_sample_sc": 4.8,
444
+ "transient_geneset_scores": 1.4,
445
+ "persistent_inputs": 0.2,
446
+ "persistent_pretrain_ckpts": 0.6,
447
+ "persistent_target_models": 0.4
448
+ },
449
+ "largest_rep_cells": 6549,
450
+ "check_seconds": 1.3
451
+ },
452
+ {
453
+ "line": "budget|immicro|4|lean_hvset,clean_prepared,offload|10",
454
+ "mode": "budget",
455
+ "ds": "immicro",
456
+ "fold": 4,
457
+ "opts": [
458
+ "lean_hvset",
459
+ "clean_prepared",
460
+ "offload"
461
+ ],
462
+ "n": 10,
463
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
464
+ "builder_ok": true,
465
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold4/n10",
466
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold4/scsemi_n10__raw.npz",
467
+ "n_reps": 17,
468
+ "n_targets": 21,
469
+ "n_rep_cells": 54692,
470
+ "modeled_genes": 5508,
471
+ "equals_scorer_genes": true,
472
+ "depth": 1971.0,
473
+ "work_state": "absent",
474
+ "output_exists": false,
475
+ "output_validated": false,
476
+ "budget": {
477
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n10/RUN.json",
478
+ "n_train_rows": 10,
479
+ "n_inner_val_rows": 7
480
+ },
481
+ "reps_equal_lora_fit_rows": true,
482
+ "targets_per_rep_max": 6,
483
+ "gpu_hours": {
484
+ "pretrain": 0.74,
485
+ "infer": 0.47,
486
+ "total": 1.21
487
+ },
488
+ "cpu_prepare_hours": 0.02,
489
+ "disk_gb": {
490
+ "transient_sample_sc": 4.1,
491
+ "transient_geneset_scores": 1.3,
492
+ "persistent_inputs": 0.2,
493
+ "persistent_pretrain_ckpts": 0.6,
494
+ "persistent_target_models": 0.4
495
+ },
496
+ "largest_rep_cells": 4520,
497
+ "check_seconds": 1.2
498
+ },
499
+ {
500
+ "line": "budget|immicro|0|lean_hvset,clean_prepared,offload|20",
501
+ "mode": "budget",
502
+ "ds": "immicro",
503
+ "fold": 0,
504
+ "opts": [
505
+ "lean_hvset",
506
+ "clean_prepared",
507
+ "offload"
508
+ ],
509
+ "n": 20,
510
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
511
+ "builder_ok": true,
512
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold0/n20",
513
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold0/scsemi_n20__raw.npz",
514
+ "n_reps": 27,
515
+ "n_targets": 22,
516
+ "n_rep_cells": 107420,
517
+ "modeled_genes": 5508,
518
+ "equals_scorer_genes": true,
519
+ "depth": 1907.0,
520
+ "work_state": "absent",
521
+ "output_exists": false,
522
+ "output_validated": false,
523
+ "budget": {
524
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n20/RUN.json",
525
+ "n_train_rows": 20,
526
+ "n_inner_val_rows": 7
527
+ },
528
+ "reps_equal_lora_fit_rows": true,
529
+ "targets_per_rep_max": 4,
530
+ "gpu_hours": {
531
+ "pretrain": 1.46,
532
+ "infer": 0.53,
533
+ "total": 1.98
534
+ },
535
+ "cpu_prepare_hours": 0.04,
536
+ "disk_gb": {
537
+ "transient_sample_sc": 8.4,
538
+ "transient_geneset_scores": 2.5,
539
+ "persistent_inputs": 0.4,
540
+ "persistent_pretrain_ckpts": 1.0,
541
+ "persistent_target_models": 0.5
542
+ },
543
+ "largest_rep_cells": 6447,
544
+ "check_seconds": 1.3
545
+ },
546
+ {
547
+ "line": "budget|immicro|1|lean_hvset,clean_prepared,offload|20",
548
+ "mode": "budget",
549
+ "ds": "immicro",
550
+ "fold": 1,
551
+ "opts": [
552
+ "lean_hvset",
553
+ "clean_prepared",
554
+ "offload"
555
+ ],
556
+ "n": 20,
557
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
558
+ "builder_ok": true,
559
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold1/n20",
560
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold1/scsemi_n20__raw.npz",
561
+ "n_reps": 27,
562
+ "n_targets": 22,
563
+ "n_rep_cells": 103056,
564
+ "modeled_genes": 5508,
565
+ "equals_scorer_genes": true,
566
+ "depth": 2046.0,
567
+ "work_state": "absent",
568
+ "output_exists": false,
569
+ "output_validated": false,
570
+ "budget": {
571
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n20/RUN.json",
572
+ "n_train_rows": 20,
573
+ "n_inner_val_rows": 7
574
+ },
575
+ "reps_equal_lora_fit_rows": true,
576
+ "targets_per_rep_max": 4,
577
+ "gpu_hours": {
578
+ "pretrain": 1.4,
579
+ "infer": 0.49,
580
+ "total": 1.88
581
+ },
582
+ "cpu_prepare_hours": 0.04,
583
+ "disk_gb": {
584
+ "transient_sample_sc": 8.0,
585
+ "transient_geneset_scores": 2.4,
586
+ "persistent_inputs": 0.3,
587
+ "persistent_pretrain_ckpts": 1.0,
588
+ "persistent_target_models": 0.5
589
+ },
590
+ "largest_rep_cells": 6447,
591
+ "check_seconds": 1.3
592
+ },
593
+ {
594
+ "line": "budget|immicro|2|lean_hvset,clean_prepared,offload|20",
595
+ "mode": "budget",
596
+ "ds": "immicro",
597
+ "fold": 2,
598
+ "opts": [
599
+ "lean_hvset",
600
+ "clean_prepared",
601
+ "offload"
602
+ ],
603
+ "n": 20,
604
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
605
+ "builder_ok": true,
606
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold2/n20",
607
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold2/scsemi_n20__raw.npz",
608
+ "n_reps": 27,
609
+ "n_targets": 21,
610
+ "n_rep_cells": 98116,
611
+ "modeled_genes": 5508,
612
+ "equals_scorer_genes": true,
613
+ "depth": 2040.0,
614
+ "work_state": "absent",
615
+ "output_exists": false,
616
+ "output_validated": false,
617
+ "budget": {
618
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n20/RUN.json",
619
+ "n_train_rows": 20,
620
+ "n_inner_val_rows": 7
621
+ },
622
+ "reps_equal_lora_fit_rows": true,
623
+ "targets_per_rep_max": 3,
624
+ "gpu_hours": {
625
+ "pretrain": 1.33,
626
+ "infer": 0.41,
627
+ "total": 1.74
628
+ },
629
+ "cpu_prepare_hours": 0.04,
630
+ "disk_gb": {
631
+ "transient_sample_sc": 7.6,
632
+ "transient_geneset_scores": 2.3,
633
+ "persistent_inputs": 0.3,
634
+ "persistent_pretrain_ckpts": 1.0,
635
+ "persistent_target_models": 0.4
636
+ },
637
+ "largest_rep_cells": 6447,
638
+ "check_seconds": 1.3
639
+ },
640
+ {
641
+ "line": "budget|immicro|3|lean_hvset,clean_prepared,offload|20",
642
+ "mode": "budget",
643
+ "ds": "immicro",
644
+ "fold": 3,
645
+ "opts": [
646
+ "lean_hvset",
647
+ "clean_prepared",
648
+ "offload"
649
+ ],
650
+ "n": 20,
651
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
652
+ "builder_ok": true,
653
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold3/n20",
654
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold3/scsemi_n20__raw.npz",
655
+ "n_reps": 27,
656
+ "n_targets": 21,
657
+ "n_rep_cells": 101609,
658
+ "modeled_genes": 5508,
659
+ "equals_scorer_genes": true,
660
+ "depth": 2005.0,
661
+ "work_state": "absent",
662
+ "output_exists": false,
663
+ "output_validated": false,
664
+ "budget": {
665
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n20/RUN.json",
666
+ "n_train_rows": 20,
667
+ "n_inner_val_rows": 7
668
+ },
669
+ "reps_equal_lora_fit_rows": true,
670
+ "targets_per_rep_max": 3,
671
+ "gpu_hours": {
672
+ "pretrain": 1.38,
673
+ "infer": 0.45,
674
+ "total": 1.82
675
+ },
676
+ "cpu_prepare_hours": 0.04,
677
+ "disk_gb": {
678
+ "transient_sample_sc": 7.9,
679
+ "transient_geneset_scores": 2.4,
680
+ "persistent_inputs": 0.3,
681
+ "persistent_pretrain_ckpts": 1.0,
682
+ "persistent_target_models": 0.4
683
+ },
684
+ "largest_rep_cells": 6549,
685
+ "check_seconds": 1.3
686
+ },
687
+ {
688
+ "line": "budget|immicro|4|lean_hvset,clean_prepared,offload|20",
689
+ "mode": "budget",
690
+ "ds": "immicro",
691
+ "fold": 4,
692
+ "opts": [
693
+ "lean_hvset",
694
+ "clean_prepared",
695
+ "offload"
696
+ ],
697
+ "n": 20,
698
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
699
+ "builder_ok": true,
700
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold4/n20",
701
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold4/scsemi_n20__raw.npz",
702
+ "n_reps": 27,
703
+ "n_targets": 21,
704
+ "n_rep_cells": 90713,
705
+ "modeled_genes": 5508,
706
+ "equals_scorer_genes": true,
707
+ "depth": 1893.0,
708
+ "work_state": "absent",
709
+ "output_exists": false,
710
+ "output_validated": false,
711
+ "budget": {
712
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n20/RUN.json",
713
+ "n_train_rows": 20,
714
+ "n_inner_val_rows": 7
715
+ },
716
+ "reps_equal_lora_fit_rows": true,
717
+ "targets_per_rep_max": 4,
718
+ "gpu_hours": {
719
+ "pretrain": 1.23,
720
+ "infer": 0.43,
721
+ "total": 1.66
722
+ },
723
+ "cpu_prepare_hours": 0.04,
724
+ "disk_gb": {
725
+ "transient_sample_sc": 6.8,
726
+ "transient_geneset_scores": 2.1,
727
+ "persistent_inputs": 0.3,
728
+ "persistent_pretrain_ckpts": 1.0,
729
+ "persistent_target_models": 0.4
730
+ },
731
+ "largest_rep_cells": 5144,
732
+ "check_seconds": 1.3
733
+ },
734
+ {
735
+ "line": "budget|immicro|0|lean_hvset,clean_prepared,offload|40",
736
+ "mode": "budget",
737
+ "ds": "immicro",
738
+ "fold": 0,
739
+ "opts": [
740
+ "lean_hvset",
741
+ "clean_prepared",
742
+ "offload"
743
+ ],
744
+ "n": 40,
745
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
746
+ "builder_ok": true,
747
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold0/n40",
748
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold0/scsemi_n40__raw.npz",
749
+ "n_reps": 47,
750
+ "n_targets": 22,
751
+ "n_rep_cells": 179155,
752
+ "modeled_genes": 5508,
753
+ "equals_scorer_genes": true,
754
+ "depth": 1967.0,
755
+ "work_state": "absent",
756
+ "output_exists": false,
757
+ "output_validated": false,
758
+ "budget": {
759
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n40/RUN.json",
760
+ "n_train_rows": 40,
761
+ "n_inner_val_rows": 7
762
+ },
763
+ "reps_equal_lora_fit_rows": true,
764
+ "targets_per_rep_max": 3,
765
+ "gpu_hours": {
766
+ "pretrain": 2.43,
767
+ "infer": 0.5,
768
+ "total": 2.93
769
+ },
770
+ "cpu_prepare_hours": 0.07,
771
+ "disk_gb": {
772
+ "transient_sample_sc": 13.9,
773
+ "transient_geneset_scores": 4.2,
774
+ "persistent_inputs": 0.6,
775
+ "persistent_pretrain_ckpts": 1.7,
776
+ "persistent_target_models": 0.5
777
+ },
778
+ "largest_rep_cells": 6447,
779
+ "check_seconds": 1.5
780
+ },
781
+ {
782
+ "line": "budget|immicro|1|lean_hvset,clean_prepared,offload|40",
783
+ "mode": "budget",
784
+ "ds": "immicro",
785
+ "fold": 1,
786
+ "opts": [
787
+ "lean_hvset",
788
+ "clean_prepared",
789
+ "offload"
790
+ ],
791
+ "n": 40,
792
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
793
+ "builder_ok": true,
794
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold1/n40",
795
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold1/scsemi_n40__raw.npz",
796
+ "n_reps": 47,
797
+ "n_targets": 22,
798
+ "n_rep_cells": 179562,
799
+ "modeled_genes": 5508,
800
+ "equals_scorer_genes": true,
801
+ "depth": 2000.0,
802
+ "work_state": "absent",
803
+ "output_exists": false,
804
+ "output_validated": false,
805
+ "budget": {
806
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n40/RUN.json",
807
+ "n_train_rows": 40,
808
+ "n_inner_val_rows": 7
809
+ },
810
+ "reps_equal_lora_fit_rows": true,
811
+ "targets_per_rep_max": 3,
812
+ "gpu_hours": {
813
+ "pretrain": 2.43,
814
+ "infer": 0.51,
815
+ "total": 2.94
816
+ },
817
+ "cpu_prepare_hours": 0.07,
818
+ "disk_gb": {
819
+ "transient_sample_sc": 13.9,
820
+ "transient_geneset_scores": 4.2,
821
+ "persistent_inputs": 0.6,
822
+ "persistent_pretrain_ckpts": 1.7,
823
+ "persistent_target_models": 0.5
824
+ },
825
+ "largest_rep_cells": 6447,
826
+ "check_seconds": 1.5
827
+ },
828
+ {
829
+ "line": "budget|immicro|2|lean_hvset,clean_prepared,offload|40",
830
+ "mode": "budget",
831
+ "ds": "immicro",
832
+ "fold": 2,
833
+ "opts": [
834
+ "lean_hvset",
835
+ "clean_prepared",
836
+ "offload"
837
+ ],
838
+ "n": 40,
839
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
840
+ "builder_ok": true,
841
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold2/n40",
842
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold2/scsemi_n40__raw.npz",
843
+ "n_reps": 47,
844
+ "n_targets": 21,
845
+ "n_rep_cells": 172634,
846
+ "modeled_genes": 5508,
847
+ "equals_scorer_genes": true,
848
+ "depth": 1985.0,
849
+ "work_state": "absent",
850
+ "output_exists": false,
851
+ "output_validated": false,
852
+ "budget": {
853
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n40/RUN.json",
854
+ "n_train_rows": 40,
855
+ "n_inner_val_rows": 7
856
+ },
857
+ "reps_equal_lora_fit_rows": true,
858
+ "targets_per_rep_max": 3,
859
+ "gpu_hours": {
860
+ "pretrain": 2.34,
861
+ "infer": 0.39,
862
+ "total": 2.73
863
+ },
864
+ "cpu_prepare_hours": 0.07,
865
+ "disk_gb": {
866
+ "transient_sample_sc": 13.4,
867
+ "transient_geneset_scores": 4.0,
868
+ "persistent_inputs": 0.6,
869
+ "persistent_pretrain_ckpts": 1.7,
870
+ "persistent_target_models": 0.4
871
+ },
872
+ "largest_rep_cells": 6549,
873
+ "check_seconds": 1.5
874
+ },
875
+ {
876
+ "line": "budget|immicro|3|lean_hvset,clean_prepared,offload|40",
877
+ "mode": "budget",
878
+ "ds": "immicro",
879
+ "fold": 3,
880
+ "opts": [
881
+ "lean_hvset",
882
+ "clean_prepared",
883
+ "offload"
884
+ ],
885
+ "n": 40,
886
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
887
+ "builder_ok": true,
888
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold3/n40",
889
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold3/scsemi_n40__raw.npz",
890
+ "n_reps": 47,
891
+ "n_targets": 21,
892
+ "n_rep_cells": 174426,
893
+ "modeled_genes": 5508,
894
+ "equals_scorer_genes": true,
895
+ "depth": 1942.0,
896
+ "work_state": "absent",
897
+ "output_exists": false,
898
+ "output_validated": false,
899
+ "budget": {
900
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n40/RUN.json",
901
+ "n_train_rows": 40,
902
+ "n_inner_val_rows": 7
903
+ },
904
+ "reps_equal_lora_fit_rows": true,
905
+ "targets_per_rep_max": 2,
906
+ "gpu_hours": {
907
+ "pretrain": 2.36,
908
+ "infer": 0.45,
909
+ "total": 2.82
910
+ },
911
+ "cpu_prepare_hours": 0.07,
912
+ "disk_gb": {
913
+ "transient_sample_sc": 13.5,
914
+ "transient_geneset_scores": 4.1,
915
+ "persistent_inputs": 0.6,
916
+ "persistent_pretrain_ckpts": 1.7,
917
+ "persistent_target_models": 0.4
918
+ },
919
+ "largest_rep_cells": 6549,
920
+ "check_seconds": 1.5
921
+ },
922
+ {
923
+ "line": "budget|immicro|4|lean_hvset,clean_prepared,offload|40",
924
+ "mode": "budget",
925
+ "ds": "immicro",
926
+ "fold": 4,
927
+ "opts": [
928
+ "lean_hvset",
929
+ "clean_prepared",
930
+ "offload"
931
+ ],
932
+ "n": 40,
933
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
934
+ "builder_ok": true,
935
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/budget/fold4/n40",
936
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fold4/scsemi_n40__raw.npz",
937
+ "n_reps": 47,
938
+ "n_targets": 21,
939
+ "n_rep_cells": 164450,
940
+ "modeled_genes": 5508,
941
+ "equals_scorer_genes": true,
942
+ "depth": 1958.0,
943
+ "work_state": "absent",
944
+ "output_exists": false,
945
+ "output_validated": false,
946
+ "budget": {
947
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n40/RUN.json",
948
+ "n_train_rows": 40,
949
+ "n_inner_val_rows": 7
950
+ },
951
+ "reps_equal_lora_fit_rows": true,
952
+ "targets_per_rep_max": 3,
953
+ "gpu_hours": {
954
+ "pretrain": 2.23,
955
+ "infer": 0.46,
956
+ "total": 2.69
957
+ },
958
+ "cpu_prepare_hours": 0.07,
959
+ "disk_gb": {
960
+ "transient_sample_sc": 12.5,
961
+ "transient_geneset_scores": 3.8,
962
+ "persistent_inputs": 0.5,
963
+ "persistent_pretrain_ckpts": 1.7,
964
+ "persistent_target_models": 0.4
965
+ },
966
+ "largest_rep_cells": 6447,
967
+ "check_seconds": 1.5
968
+ },
969
+ {
970
+ "line": "budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|5",
971
+ "mode": "budget",
972
+ "ds": "ye2026_sepsis",
973
+ "fold": 0,
974
+ "opts": [
975
+ "lean_hvset",
976
+ "clean_prepared",
977
+ "offload"
978
+ ],
979
+ "n": 5,
980
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
981
+ "builder_ok": true,
982
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold0/n5",
983
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n5__raw.npz",
984
+ "n_reps": 12,
985
+ "n_targets": 17,
986
+ "n_rep_cells": 79898,
987
+ "modeled_genes": 5975,
988
+ "equals_scorer_genes": true,
989
+ "depth": 2282.0,
990
+ "work_state": "absent",
991
+ "output_exists": false,
992
+ "output_validated": false,
993
+ "budget": {
994
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n5/RUN.json",
995
+ "n_train_rows": 5,
996
+ "n_inner_val_rows": 7
997
+ },
998
+ "reps_equal_lora_fit_rows": true,
999
+ "targets_per_rep_max": 5,
1000
+ "gpu_hours": {
1001
+ "pretrain": 1.08,
1002
+ "infer": 0.66,
1003
+ "total": 1.74
1004
+ },
1005
+ "cpu_prepare_hours": 0.03,
1006
+ "disk_gb": {
1007
+ "transient_sample_sc": 8.1,
1008
+ "transient_geneset_scores": 1.9,
1009
+ "persistent_inputs": 0.3,
1010
+ "persistent_pretrain_ckpts": 0.4,
1011
+ "persistent_target_models": 0.4
1012
+ },
1013
+ "largest_rep_cells": 9614,
1014
+ "check_seconds": 3.6
1015
+ },
1016
+ {
1017
+ "line": "budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|5",
1018
+ "mode": "budget",
1019
+ "ds": "ye2026_sepsis",
1020
+ "fold": 1,
1021
+ "opts": [
1022
+ "lean_hvset",
1023
+ "clean_prepared",
1024
+ "offload"
1025
+ ],
1026
+ "n": 5,
1027
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1028
+ "builder_ok": true,
1029
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold1/n5",
1030
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n5__raw.npz",
1031
+ "n_reps": 12,
1032
+ "n_targets": 17,
1033
+ "n_rep_cells": 94987,
1034
+ "modeled_genes": 5975,
1035
+ "equals_scorer_genes": true,
1036
+ "depth": 1910.0,
1037
+ "work_state": "absent",
1038
+ "output_exists": false,
1039
+ "output_validated": false,
1040
+ "budget": {
1041
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n5/RUN.json",
1042
+ "n_train_rows": 5,
1043
+ "n_inner_val_rows": 7
1044
+ },
1045
+ "reps_equal_lora_fit_rows": true,
1046
+ "targets_per_rep_max": 4,
1047
+ "gpu_hours": {
1048
+ "pretrain": 1.29,
1049
+ "infer": 0.77,
1050
+ "total": 2.06
1051
+ },
1052
+ "cpu_prepare_hours": 0.04,
1053
+ "disk_gb": {
1054
+ "transient_sample_sc": 10.9,
1055
+ "transient_geneset_scores": 2.2,
1056
+ "persistent_inputs": 0.3,
1057
+ "persistent_pretrain_ckpts": 0.4,
1058
+ "persistent_target_models": 0.4
1059
+ },
1060
+ "largest_rep_cells": 14291,
1061
+ "check_seconds": 3.5
1062
+ },
1063
+ {
1064
+ "line": "budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|5",
1065
+ "mode": "budget",
1066
+ "ds": "ye2026_sepsis",
1067
+ "fold": 2,
1068
+ "opts": [
1069
+ "lean_hvset",
1070
+ "clean_prepared",
1071
+ "offload"
1072
+ ],
1073
+ "n": 5,
1074
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1075
+ "builder_ok": true,
1076
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold2/n5",
1077
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold2/scsemi_n5__raw.npz",
1078
+ "n_reps": 13,
1079
+ "n_targets": 16,
1080
+ "n_rep_cells": 98338,
1081
+ "modeled_genes": 5975,
1082
+ "equals_scorer_genes": true,
1083
+ "depth": 1944.0,
1084
+ "work_state": "absent",
1085
+ "output_exists": false,
1086
+ "output_validated": false,
1087
+ "budget": {
1088
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n5/RUN.json",
1089
+ "n_train_rows": 5,
1090
+ "n_inner_val_rows": 8
1091
+ },
1092
+ "reps_equal_lora_fit_rows": true,
1093
+ "targets_per_rep_max": 4,
1094
+ "gpu_hours": {
1095
+ "pretrain": 1.33,
1096
+ "infer": 0.6,
1097
+ "total": 1.93
1098
+ },
1099
+ "cpu_prepare_hours": 0.04,
1100
+ "disk_gb": {
1101
+ "transient_sample_sc": 10.7,
1102
+ "transient_geneset_scores": 2.3,
1103
+ "persistent_inputs": 0.3,
1104
+ "persistent_pretrain_ckpts": 0.5,
1105
+ "persistent_target_models": 0.3
1106
+ },
1107
+ "largest_rep_cells": 13774,
1108
+ "check_seconds": 3.6
1109
+ },
1110
+ {
1111
+ "line": "budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|5",
1112
+ "mode": "budget",
1113
+ "ds": "ye2026_sepsis",
1114
+ "fold": 3,
1115
+ "opts": [
1116
+ "lean_hvset",
1117
+ "clean_prepared",
1118
+ "offload"
1119
+ ],
1120
+ "n": 5,
1121
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1122
+ "builder_ok": true,
1123
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold3/n5",
1124
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold3/scsemi_n5__raw.npz",
1125
+ "n_reps": 13,
1126
+ "n_targets": 16,
1127
+ "n_rep_cells": 101743,
1128
+ "modeled_genes": 5975,
1129
+ "equals_scorer_genes": true,
1130
+ "depth": 1822.0,
1131
+ "work_state": "absent",
1132
+ "output_exists": false,
1133
+ "output_validated": false,
1134
+ "budget": {
1135
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n5/RUN.json",
1136
+ "n_train_rows": 5,
1137
+ "n_inner_val_rows": 8
1138
+ },
1139
+ "reps_equal_lora_fit_rows": true,
1140
+ "targets_per_rep_max": 5,
1141
+ "gpu_hours": {
1142
+ "pretrain": 1.38,
1143
+ "infer": 0.77,
1144
+ "total": 2.15
1145
+ },
1146
+ "cpu_prepare_hours": 0.04,
1147
+ "disk_gb": {
1148
+ "transient_sample_sc": 11.6,
1149
+ "transient_geneset_scores": 2.4,
1150
+ "persistent_inputs": 0.3,
1151
+ "persistent_pretrain_ckpts": 0.5,
1152
+ "persistent_target_models": 0.3
1153
+ },
1154
+ "largest_rep_cells": 14291,
1155
+ "check_seconds": 3.5
1156
+ },
1157
+ {
1158
+ "line": "budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|5",
1159
+ "mode": "budget",
1160
+ "ds": "ye2026_sepsis",
1161
+ "fold": 4,
1162
+ "opts": [
1163
+ "lean_hvset",
1164
+ "clean_prepared",
1165
+ "offload"
1166
+ ],
1167
+ "n": 5,
1168
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1169
+ "builder_ok": true,
1170
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold4/n5",
1171
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold4/scsemi_n5__raw.npz",
1172
+ "n_reps": 12,
1173
+ "n_targets": 16,
1174
+ "n_rep_cells": 85755,
1175
+ "modeled_genes": 5975,
1176
+ "equals_scorer_genes": true,
1177
+ "depth": 2042.0,
1178
+ "work_state": "absent",
1179
+ "output_exists": false,
1180
+ "output_validated": false,
1181
+ "budget": {
1182
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n5/RUN.json",
1183
+ "n_train_rows": 5,
1184
+ "n_inner_val_rows": 7
1185
+ },
1186
+ "reps_equal_lora_fit_rows": true,
1187
+ "targets_per_rep_max": 3,
1188
+ "gpu_hours": {
1189
+ "pretrain": 1.16,
1190
+ "infer": 0.6,
1191
+ "total": 1.76
1192
+ },
1193
+ "cpu_prepare_hours": 0.04,
1194
+ "disk_gb": {
1195
+ "transient_sample_sc": 9.2,
1196
+ "transient_geneset_scores": 2.0,
1197
+ "persistent_inputs": 0.3,
1198
+ "persistent_pretrain_ckpts": 0.4,
1199
+ "persistent_target_models": 0.3
1200
+ },
1201
+ "largest_rep_cells": 13774,
1202
+ "check_seconds": 3.6
1203
+ },
1204
+ {
1205
+ "line": "budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|10",
1206
+ "mode": "budget",
1207
+ "ds": "ye2026_sepsis",
1208
+ "fold": 0,
1209
+ "opts": [
1210
+ "lean_hvset",
1211
+ "clean_prepared",
1212
+ "offload"
1213
+ ],
1214
+ "n": 10,
1215
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1216
+ "builder_ok": true,
1217
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold0/n10",
1218
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n10__raw.npz",
1219
+ "n_reps": 17,
1220
+ "n_targets": 17,
1221
+ "n_rep_cells": 118358,
1222
+ "modeled_genes": 5975,
1223
+ "equals_scorer_genes": true,
1224
+ "depth": 2063.0,
1225
+ "work_state": "absent",
1226
+ "output_exists": false,
1227
+ "output_validated": false,
1228
+ "budget": {
1229
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n10/RUN.json",
1230
+ "n_train_rows": 10,
1231
+ "n_inner_val_rows": 7
1232
+ },
1233
+ "reps_equal_lora_fit_rows": true,
1234
+ "targets_per_rep_max": 4,
1235
+ "gpu_hours": {
1236
+ "pretrain": 1.6,
1237
+ "infer": 0.69,
1238
+ "total": 2.29
1239
+ },
1240
+ "cpu_prepare_hours": 0.05,
1241
+ "disk_gb": {
1242
+ "transient_sample_sc": 12.2,
1243
+ "transient_geneset_scores": 2.8,
1244
+ "persistent_inputs": 0.4,
1245
+ "persistent_pretrain_ckpts": 0.6,
1246
+ "persistent_target_models": 0.4
1247
+ },
1248
+ "largest_rep_cells": 10918,
1249
+ "check_seconds": 3.6
1250
+ },
1251
+ {
1252
+ "line": "budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|10",
1253
+ "mode": "budget",
1254
+ "ds": "ye2026_sepsis",
1255
+ "fold": 1,
1256
+ "opts": [
1257
+ "lean_hvset",
1258
+ "clean_prepared",
1259
+ "offload"
1260
+ ],
1261
+ "n": 10,
1262
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1263
+ "builder_ok": true,
1264
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold1/n10",
1265
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n10__raw.npz",
1266
+ "n_reps": 17,
1267
+ "n_targets": 17,
1268
+ "n_rep_cells": 127349,
1269
+ "modeled_genes": 5975,
1270
+ "equals_scorer_genes": true,
1271
+ "depth": 1878.0,
1272
+ "work_state": "absent",
1273
+ "output_exists": false,
1274
+ "output_validated": false,
1275
+ "budget": {
1276
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n10/RUN.json",
1277
+ "n_train_rows": 10,
1278
+ "n_inner_val_rows": 7
1279
+ },
1280
+ "reps_equal_lora_fit_rows": true,
1281
+ "targets_per_rep_max": 4,
1282
+ "gpu_hours": {
1283
+ "pretrain": 1.73,
1284
+ "infer": 0.77,
1285
+ "total": 2.5
1286
+ },
1287
+ "cpu_prepare_hours": 0.05,
1288
+ "disk_gb": {
1289
+ "transient_sample_sc": 14.3,
1290
+ "transient_geneset_scores": 3.0,
1291
+ "persistent_inputs": 0.4,
1292
+ "persistent_pretrain_ckpts": 0.6,
1293
+ "persistent_target_models": 0.4
1294
+ },
1295
+ "largest_rep_cells": 14291,
1296
+ "check_seconds": 3.6
1297
+ },
1298
+ {
1299
+ "line": "budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|10",
1300
+ "mode": "budget",
1301
+ "ds": "ye2026_sepsis",
1302
+ "fold": 2,
1303
+ "opts": [
1304
+ "lean_hvset",
1305
+ "clean_prepared",
1306
+ "offload"
1307
+ ],
1308
+ "n": 10,
1309
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1310
+ "builder_ok": true,
1311
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold2/n10",
1312
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold2/scsemi_n10__raw.npz",
1313
+ "n_reps": 18,
1314
+ "n_targets": 16,
1315
+ "n_rep_cells": 134825,
1316
+ "modeled_genes": 5975,
1317
+ "equals_scorer_genes": true,
1318
+ "depth": 1933.0,
1319
+ "work_state": "absent",
1320
+ "output_exists": false,
1321
+ "output_validated": false,
1322
+ "budget": {
1323
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n10/RUN.json",
1324
+ "n_train_rows": 10,
1325
+ "n_inner_val_rows": 8
1326
+ },
1327
+ "reps_equal_lora_fit_rows": true,
1328
+ "targets_per_rep_max": 4,
1329
+ "gpu_hours": {
1330
+ "pretrain": 1.83,
1331
+ "infer": 0.63,
1332
+ "total": 2.46
1333
+ },
1334
+ "cpu_prepare_hours": 0.06,
1335
+ "disk_gb": {
1336
+ "transient_sample_sc": 14.5,
1337
+ "transient_geneset_scores": 3.2,
1338
+ "persistent_inputs": 0.4,
1339
+ "persistent_pretrain_ckpts": 0.6,
1340
+ "persistent_target_models": 0.3
1341
+ },
1342
+ "largest_rep_cells": 13774,
1343
+ "check_seconds": 3.6
1344
+ },
1345
+ {
1346
+ "line": "budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|10",
1347
+ "mode": "budget",
1348
+ "ds": "ye2026_sepsis",
1349
+ "fold": 3,
1350
+ "opts": [
1351
+ "lean_hvset",
1352
+ "clean_prepared",
1353
+ "offload"
1354
+ ],
1355
+ "n": 10,
1356
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1357
+ "builder_ok": true,
1358
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold3/n10",
1359
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold3/scsemi_n10__raw.npz",
1360
+ "n_reps": 18,
1361
+ "n_targets": 16,
1362
+ "n_rep_cells": 139187,
1363
+ "modeled_genes": 5975,
1364
+ "equals_scorer_genes": true,
1365
+ "depth": 1926.0,
1366
+ "work_state": "absent",
1367
+ "output_exists": false,
1368
+ "output_validated": false,
1369
+ "budget": {
1370
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n10/RUN.json",
1371
+ "n_train_rows": 10,
1372
+ "n_inner_val_rows": 8
1373
+ },
1374
+ "reps_equal_lora_fit_rows": true,
1375
+ "targets_per_rep_max": 3,
1376
+ "gpu_hours": {
1377
+ "pretrain": 1.89,
1378
+ "infer": 0.66,
1379
+ "total": 2.55
1380
+ },
1381
+ "cpu_prepare_hours": 0.06,
1382
+ "disk_gb": {
1383
+ "transient_sample_sc": 15.5,
1384
+ "transient_geneset_scores": 3.3,
1385
+ "persistent_inputs": 0.5,
1386
+ "persistent_pretrain_ckpts": 0.6,
1387
+ "persistent_target_models": 0.3
1388
+ },
1389
+ "largest_rep_cells": 14291,
1390
+ "check_seconds": 3.6
1391
+ },
1392
+ {
1393
+ "line": "budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|10",
1394
+ "mode": "budget",
1395
+ "ds": "ye2026_sepsis",
1396
+ "fold": 4,
1397
+ "opts": [
1398
+ "lean_hvset",
1399
+ "clean_prepared",
1400
+ "offload"
1401
+ ],
1402
+ "n": 10,
1403
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1404
+ "builder_ok": true,
1405
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold4/n10",
1406
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold4/scsemi_n10__raw.npz",
1407
+ "n_reps": 17,
1408
+ "n_targets": 16,
1409
+ "n_rep_cells": 120454,
1410
+ "modeled_genes": 5975,
1411
+ "equals_scorer_genes": true,
1412
+ "depth": 2100.0,
1413
+ "work_state": "absent",
1414
+ "output_exists": false,
1415
+ "output_validated": false,
1416
+ "budget": {
1417
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n10/RUN.json",
1418
+ "n_train_rows": 10,
1419
+ "n_inner_val_rows": 7
1420
+ },
1421
+ "reps_equal_lora_fit_rows": true,
1422
+ "targets_per_rep_max": 2,
1423
+ "gpu_hours": {
1424
+ "pretrain": 1.63,
1425
+ "infer": 0.61,
1426
+ "total": 2.24
1427
+ },
1428
+ "cpu_prepare_hours": 0.05,
1429
+ "disk_gb": {
1430
+ "transient_sample_sc": 12.9,
1431
+ "transient_geneset_scores": 2.8,
1432
+ "persistent_inputs": 0.4,
1433
+ "persistent_pretrain_ckpts": 0.6,
1434
+ "persistent_target_models": 0.3
1435
+ },
1436
+ "largest_rep_cells": 13774,
1437
+ "check_seconds": 3.6
1438
+ },
1439
+ {
1440
+ "line": "budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|20",
1441
+ "mode": "budget",
1442
+ "ds": "ye2026_sepsis",
1443
+ "fold": 0,
1444
+ "opts": [
1445
+ "lean_hvset",
1446
+ "clean_prepared",
1447
+ "offload"
1448
+ ],
1449
+ "n": 20,
1450
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1451
+ "builder_ok": true,
1452
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold0/n20",
1453
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n20__raw.npz",
1454
+ "n_reps": 27,
1455
+ "n_targets": 17,
1456
+ "n_rep_cells": 177973,
1457
+ "modeled_genes": 5975,
1458
+ "equals_scorer_genes": true,
1459
+ "depth": 2118.0,
1460
+ "work_state": "absent",
1461
+ "output_exists": false,
1462
+ "output_validated": false,
1463
+ "budget": {
1464
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n20/RUN.json",
1465
+ "n_train_rows": 20,
1466
+ "n_inner_val_rows": 7
1467
+ },
1468
+ "reps_equal_lora_fit_rows": true,
1469
+ "targets_per_rep_max": 3,
1470
+ "gpu_hours": {
1471
+ "pretrain": 2.41,
1472
+ "infer": 0.63,
1473
+ "total": 3.05
1474
+ },
1475
+ "cpu_prepare_hours": 0.07,
1476
+ "disk_gb": {
1477
+ "transient_sample_sc": 17.8,
1478
+ "transient_geneset_scores": 4.2,
1479
+ "persistent_inputs": 0.6,
1480
+ "persistent_pretrain_ckpts": 1.0,
1481
+ "persistent_target_models": 0.4
1482
+ },
1483
+ "largest_rep_cells": 10918,
1484
+ "check_seconds": 3.7
1485
+ },
1486
+ {
1487
+ "line": "budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|20",
1488
+ "mode": "budget",
1489
+ "ds": "ye2026_sepsis",
1490
+ "fold": 1,
1491
+ "opts": [
1492
+ "lean_hvset",
1493
+ "clean_prepared",
1494
+ "offload"
1495
+ ],
1496
+ "n": 20,
1497
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1498
+ "builder_ok": true,
1499
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold1/n20",
1500
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n20__raw.npz",
1501
+ "n_reps": 27,
1502
+ "n_targets": 17,
1503
+ "n_rep_cells": 201190,
1504
+ "modeled_genes": 5975,
1505
+ "equals_scorer_genes": true,
1506
+ "depth": 1900.0,
1507
+ "work_state": "absent",
1508
+ "output_exists": false,
1509
+ "output_validated": false,
1510
+ "budget": {
1511
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n20/RUN.json",
1512
+ "n_train_rows": 20,
1513
+ "n_inner_val_rows": 7
1514
+ },
1515
+ "reps_equal_lora_fit_rows": true,
1516
+ "targets_per_rep_max": 3,
1517
+ "gpu_hours": {
1518
+ "pretrain": 2.73,
1519
+ "infer": 0.7,
1520
+ "total": 3.43
1521
+ },
1522
+ "cpu_prepare_hours": 0.08,
1523
+ "disk_gb": {
1524
+ "transient_sample_sc": 22.4,
1525
+ "transient_geneset_scores": 4.7,
1526
+ "persistent_inputs": 0.7,
1527
+ "persistent_pretrain_ckpts": 1.0,
1528
+ "persistent_target_models": 0.4
1529
+ },
1530
+ "largest_rep_cells": 15576,
1531
+ "check_seconds": 3.7
1532
+ },
1533
+ {
1534
+ "line": "budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|20",
1535
+ "mode": "budget",
1536
+ "ds": "ye2026_sepsis",
1537
+ "fold": 2,
1538
+ "opts": [
1539
+ "lean_hvset",
1540
+ "clean_prepared",
1541
+ "offload"
1542
+ ],
1543
+ "n": 20,
1544
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1545
+ "builder_ok": true,
1546
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold2/n20",
1547
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold2/scsemi_n20__raw.npz",
1548
+ "n_reps": 28,
1549
+ "n_targets": 16,
1550
+ "n_rep_cells": 217916,
1551
+ "modeled_genes": 5975,
1552
+ "equals_scorer_genes": true,
1553
+ "depth": 1991.0,
1554
+ "work_state": "absent",
1555
+ "output_exists": false,
1556
+ "output_validated": false,
1557
+ "budget": {
1558
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n20/RUN.json",
1559
+ "n_train_rows": 20,
1560
+ "n_inner_val_rows": 8
1561
+ },
1562
+ "reps_equal_lora_fit_rows": true,
1563
+ "targets_per_rep_max": 2,
1564
+ "gpu_hours": {
1565
+ "pretrain": 2.95,
1566
+ "infer": 0.68,
1567
+ "total": 3.64
1568
+ },
1569
+ "cpu_prepare_hours": 0.09,
1570
+ "disk_gb": {
1571
+ "transient_sample_sc": 23.6,
1572
+ "transient_geneset_scores": 5.1,
1573
+ "persistent_inputs": 0.7,
1574
+ "persistent_pretrain_ckpts": 1.0,
1575
+ "persistent_target_models": 0.3
1576
+ },
1577
+ "largest_rep_cells": 13774,
1578
+ "check_seconds": 3.8
1579
+ },
1580
+ {
1581
+ "line": "budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|20",
1582
+ "mode": "budget",
1583
+ "ds": "ye2026_sepsis",
1584
+ "fold": 3,
1585
+ "opts": [
1586
+ "lean_hvset",
1587
+ "clean_prepared",
1588
+ "offload"
1589
+ ],
1590
+ "n": 20,
1591
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1592
+ "builder_ok": true,
1593
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold3/n20",
1594
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold3/scsemi_n20__raw.npz",
1595
+ "n_reps": 28,
1596
+ "n_targets": 16,
1597
+ "n_rep_cells": 213924,
1598
+ "modeled_genes": 5975,
1599
+ "equals_scorer_genes": true,
1600
+ "depth": 1939.0,
1601
+ "work_state": "absent",
1602
+ "output_exists": false,
1603
+ "output_validated": false,
1604
+ "budget": {
1605
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n20/RUN.json",
1606
+ "n_train_rows": 20,
1607
+ "n_inner_val_rows": 8
1608
+ },
1609
+ "reps_equal_lora_fit_rows": true,
1610
+ "targets_per_rep_max": 3,
1611
+ "gpu_hours": {
1612
+ "pretrain": 2.9,
1613
+ "infer": 0.57,
1614
+ "total": 3.47
1615
+ },
1616
+ "cpu_prepare_hours": 0.09,
1617
+ "disk_gb": {
1618
+ "transient_sample_sc": 23.8,
1619
+ "transient_geneset_scores": 5.0,
1620
+ "persistent_inputs": 0.7,
1621
+ "persistent_pretrain_ckpts": 1.0,
1622
+ "persistent_target_models": 0.3
1623
+ },
1624
+ "largest_rep_cells": 15576,
1625
+ "check_seconds": 3.8
1626
+ },
1627
+ {
1628
+ "line": "budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|20",
1629
+ "mode": "budget",
1630
+ "ds": "ye2026_sepsis",
1631
+ "fold": 4,
1632
+ "opts": [
1633
+ "lean_hvset",
1634
+ "clean_prepared",
1635
+ "offload"
1636
+ ],
1637
+ "n": 20,
1638
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1639
+ "builder_ok": true,
1640
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold4/n20",
1641
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold4/scsemi_n20__raw.npz",
1642
+ "n_reps": 27,
1643
+ "n_targets": 16,
1644
+ "n_rep_cells": 188101,
1645
+ "modeled_genes": 5975,
1646
+ "equals_scorer_genes": true,
1647
+ "depth": 2075.0,
1648
+ "work_state": "absent",
1649
+ "output_exists": false,
1650
+ "output_validated": false,
1651
+ "budget": {
1652
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n20/RUN.json",
1653
+ "n_train_rows": 20,
1654
+ "n_inner_val_rows": 7
1655
+ },
1656
+ "reps_equal_lora_fit_rows": true,
1657
+ "targets_per_rep_max": 3,
1658
+ "gpu_hours": {
1659
+ "pretrain": 2.55,
1660
+ "infer": 0.62,
1661
+ "total": 3.17
1662
+ },
1663
+ "cpu_prepare_hours": 0.08,
1664
+ "disk_gb": {
1665
+ "transient_sample_sc": 19.7,
1666
+ "transient_geneset_scores": 4.4,
1667
+ "persistent_inputs": 0.6,
1668
+ "persistent_pretrain_ckpts": 1.0,
1669
+ "persistent_target_models": 0.3
1670
+ },
1671
+ "largest_rep_cells": 13774,
1672
+ "check_seconds": 3.7
1673
+ },
1674
+ {
1675
+ "line": "budget|ye2026_sepsis|0|lean_hvset,clean_prepared,offload|40",
1676
+ "mode": "budget",
1677
+ "ds": "ye2026_sepsis",
1678
+ "fold": 0,
1679
+ "opts": [
1680
+ "lean_hvset",
1681
+ "clean_prepared",
1682
+ "offload"
1683
+ ],
1684
+ "n": 40,
1685
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1686
+ "builder_ok": true,
1687
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold0/n40",
1688
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n40__raw.npz",
1689
+ "n_reps": 47,
1690
+ "n_targets": 17,
1691
+ "n_rep_cells": 307585,
1692
+ "modeled_genes": 5975,
1693
+ "equals_scorer_genes": true,
1694
+ "depth": 1985.0,
1695
+ "work_state": "absent",
1696
+ "output_exists": false,
1697
+ "output_validated": false,
1698
+ "budget": {
1699
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n40/RUN.json",
1700
+ "n_train_rows": 40,
1701
+ "n_inner_val_rows": 7
1702
+ },
1703
+ "reps_equal_lora_fit_rows": true,
1704
+ "targets_per_rep_max": 3,
1705
+ "gpu_hours": {
1706
+ "pretrain": 4.17,
1707
+ "infer": 0.57,
1708
+ "total": 4.74
1709
+ },
1710
+ "cpu_prepare_hours": 0.13,
1711
+ "disk_gb": {
1712
+ "transient_sample_sc": 31.0,
1713
+ "transient_geneset_scores": 7.2,
1714
+ "persistent_inputs": 1.0,
1715
+ "persistent_pretrain_ckpts": 1.7,
1716
+ "persistent_target_models": 0.4
1717
+ },
1718
+ "largest_rep_cells": 10918,
1719
+ "check_seconds": 4.0
1720
+ },
1721
+ {
1722
+ "line": "budget|ye2026_sepsis|1|lean_hvset,clean_prepared,offload|40",
1723
+ "mode": "budget",
1724
+ "ds": "ye2026_sepsis",
1725
+ "fold": 1,
1726
+ "opts": [
1727
+ "lean_hvset",
1728
+ "clean_prepared",
1729
+ "offload"
1730
+ ],
1731
+ "n": 40,
1732
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1733
+ "builder_ok": true,
1734
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold1/n40",
1735
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold1/scsemi_n40__raw.npz",
1736
+ "n_reps": 47,
1737
+ "n_targets": 17,
1738
+ "n_rep_cells": 340692,
1739
+ "modeled_genes": 5975,
1740
+ "equals_scorer_genes": true,
1741
+ "depth": 1936.0,
1742
+ "work_state": "absent",
1743
+ "output_exists": false,
1744
+ "output_validated": false,
1745
+ "budget": {
1746
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n40/RUN.json",
1747
+ "n_train_rows": 40,
1748
+ "n_inner_val_rows": 7
1749
+ },
1750
+ "reps_equal_lora_fit_rows": true,
1751
+ "targets_per_rep_max": 2,
1752
+ "gpu_hours": {
1753
+ "pretrain": 4.62,
1754
+ "infer": 0.66,
1755
+ "total": 5.28
1756
+ },
1757
+ "cpu_prepare_hours": 0.14,
1758
+ "disk_gb": {
1759
+ "transient_sample_sc": 36.9,
1760
+ "transient_geneset_scores": 8.0,
1761
+ "persistent_inputs": 1.1,
1762
+ "persistent_pretrain_ckpts": 1.7,
1763
+ "persistent_target_models": 0.4
1764
+ },
1765
+ "largest_rep_cells": 15576,
1766
+ "check_seconds": 4.0
1767
+ },
1768
+ {
1769
+ "line": "budget|ye2026_sepsis|2|lean_hvset,clean_prepared,offload|40",
1770
+ "mode": "budget",
1771
+ "ds": "ye2026_sepsis",
1772
+ "fold": 2,
1773
+ "opts": [
1774
+ "lean_hvset",
1775
+ "clean_prepared",
1776
+ "offload"
1777
+ ],
1778
+ "n": 40,
1779
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1780
+ "builder_ok": true,
1781
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold2/n40",
1782
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold2/scsemi_n40__raw.npz",
1783
+ "n_reps": 48,
1784
+ "n_targets": 16,
1785
+ "n_rep_cells": 356480,
1786
+ "modeled_genes": 5975,
1787
+ "equals_scorer_genes": true,
1788
+ "depth": 1968.0,
1789
+ "work_state": "absent",
1790
+ "output_exists": false,
1791
+ "output_validated": false,
1792
+ "budget": {
1793
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n40/RUN.json",
1794
+ "n_train_rows": 40,
1795
+ "n_inner_val_rows": 8
1796
+ },
1797
+ "reps_equal_lora_fit_rows": true,
1798
+ "targets_per_rep_max": 2,
1799
+ "gpu_hours": {
1800
+ "pretrain": 4.83,
1801
+ "infer": 0.66,
1802
+ "total": 5.49
1803
+ },
1804
+ "cpu_prepare_hours": 0.15,
1805
+ "disk_gb": {
1806
+ "transient_sample_sc": 38.4,
1807
+ "transient_geneset_scores": 8.3,
1808
+ "persistent_inputs": 1.2,
1809
+ "persistent_pretrain_ckpts": 1.7,
1810
+ "persistent_target_models": 0.3
1811
+ },
1812
+ "largest_rep_cells": 15576,
1813
+ "check_seconds": 4.0
1814
+ },
1815
+ {
1816
+ "line": "budget|ye2026_sepsis|3|lean_hvset,clean_prepared,offload|40",
1817
+ "mode": "budget",
1818
+ "ds": "ye2026_sepsis",
1819
+ "fold": 3,
1820
+ "opts": [
1821
+ "lean_hvset",
1822
+ "clean_prepared",
1823
+ "offload"
1824
+ ],
1825
+ "n": 40,
1826
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1827
+ "builder_ok": true,
1828
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold3/n40",
1829
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold3/scsemi_n40__raw.npz",
1830
+ "n_reps": 48,
1831
+ "n_targets": 16,
1832
+ "n_rep_cells": 363864,
1833
+ "modeled_genes": 5975,
1834
+ "equals_scorer_genes": true,
1835
+ "depth": 1962.0,
1836
+ "work_state": "absent",
1837
+ "output_exists": false,
1838
+ "output_validated": false,
1839
+ "budget": {
1840
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n40/RUN.json",
1841
+ "n_train_rows": 40,
1842
+ "n_inner_val_rows": 8
1843
+ },
1844
+ "reps_equal_lora_fit_rows": true,
1845
+ "targets_per_rep_max": 2,
1846
+ "gpu_hours": {
1847
+ "pretrain": 4.93,
1848
+ "infer": 0.62,
1849
+ "total": 5.55
1850
+ },
1851
+ "cpu_prepare_hours": 0.15,
1852
+ "disk_gb": {
1853
+ "transient_sample_sc": 39.6,
1854
+ "transient_geneset_scores": 8.5,
1855
+ "persistent_inputs": 1.2,
1856
+ "persistent_pretrain_ckpts": 1.7,
1857
+ "persistent_target_models": 0.3
1858
+ },
1859
+ "largest_rep_cells": 15576,
1860
+ "check_seconds": 4.1
1861
+ },
1862
+ {
1863
+ "line": "budget|ye2026_sepsis|4|lean_hvset,clean_prepared,offload|40",
1864
+ "mode": "budget",
1865
+ "ds": "ye2026_sepsis",
1866
+ "fold": 4,
1867
+ "opts": [
1868
+ "lean_hvset",
1869
+ "clean_prepared",
1870
+ "offload"
1871
+ ],
1872
+ "n": 40,
1873
+ "queue": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/queues/server1_budget_plain_20261002.txt",
1874
+ "builder_ok": true,
1875
+ "work": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/budget/fold4/n40",
1876
+ "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold4/scsemi_n40__raw.npz",
1877
+ "n_reps": 47,
1878
+ "n_targets": 16,
1879
+ "n_rep_cells": 340142,
1880
+ "modeled_genes": 5975,
1881
+ "equals_scorer_genes": true,
1882
+ "depth": 2008.0,
1883
+ "work_state": "absent",
1884
+ "output_exists": false,
1885
+ "output_validated": false,
1886
+ "budget": {
1887
+ "lora_run": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n40/RUN.json",
1888
+ "n_train_rows": 40,
1889
+ "n_inner_val_rows": 7
1890
+ },
1891
+ "reps_equal_lora_fit_rows": true,
1892
+ "targets_per_rep_max": 3,
1893
+ "gpu_hours": {
1894
+ "pretrain": 4.61,
1895
+ "infer": 0.65,
1896
+ "total": 5.27
1897
+ },
1898
+ "cpu_prepare_hours": 0.14,
1899
+ "disk_gb": {
1900
+ "transient_sample_sc": 36.0,
1901
+ "transient_geneset_scores": 8.0,
1902
+ "persistent_inputs": 1.1,
1903
+ "persistent_pretrain_ckpts": 1.7,
1904
+ "persistent_target_models": 0.3
1905
+ },
1906
+ "largest_rep_cells": 14291,
1907
+ "check_seconds": 4.0
1908
+ }
1909
+ ]
1910
+ }