sequence stringlengths 12.8k 12.8k | chrom stringlengths 10 17 | start int32 0 2B | end int32 12.8k 2B | cds_spans listlengths 0 135 | region_segments listlengths 1 248 | sampling_mode stringclasses 3
values |
|---|---|---|---|---|---|---|
CTCAAGAGTGTTATAGATCCCCAGGGATATTTCTAACCAGTGATTTGGAAAAAAAAGATTTATATAGAAAAGAAGGGAAAGGAGACGGAAGCACCAATATGGATTTTCTCTTTCTCACTGTGTTTCCTTCTCACAATTCACACTTGGTTTTTCCTCCTACCTCCTACCTTTGTGATAAACATACACAAGCTTCTGAATCATTCATTTCCCACCATCAGCTTAGTATGCATTACTTTCTGCCTTGGAAGCCCACTTCTTACCCATACAGCACTTCTTTGTATAATTATGCCCATATTCTAGAGAAGCTGGGACTAATCTTA... | VYXB01006202.1 | 17,960 | 30,760 | [
[
11835,
12237
],
[
12386,
12554
]
] | [
[
0,
809,
0
],
[
809,
11835,
5
],
[
11835,
12237,
1
],
[
12237,
12386,
4
],
[
12386,
12554,
1
],
[
12554,
12800,
4
]
] | cds_anchored |
CCCTTATGTTTTCTAAAGGATATACTTTGTTTTAGGCAAATTGTGGAAATTACTGGTTGAATTTCACAGTTTTGTGAAAGGTGGGAAATAGGCCCAGTGTCCCAGGCCTAGAATCCTGTAAGGTAGGTCAGATGTGTTGTTGTGCTCCTGTAAGCTATGAGGTATAGTTCCACTGTGCATTAGGAATAAACACCTCCACTCCACAAATGACTTGCAGAAATAAGTTTTATCTTTAGGGCAGAGGGAGGAGAAATTATTTCTTTGCAAGCTCTTTGTAAGTAAGGGATCTTTTCATTGTTATTTTAATATAGTTAAGACTA... | VZSE01009962.1 | 1,137,554 | 1,150,354 | [] | [
[
0,
12800,
5
]
] | uniform |
TGTTAAAACCAAACATCATCATAAAAACACTGGTCTGCTTTCAAGGAAGCTTAGTCAAGCATACTCATATATGATATCTTGTGCTAATTTTGACGCATGTGAGCTTGAGCTATAAAGTGAAGGAAAAAACATGCACCTATATGTTCCTCTTTTGTTAGCAAGCTATGGTTAGTGATATGTATATGTATTCAGTGACCTGTACAGAAGGTGCATAACATGTCTGTATGGTGGTTGATCTAAAGCAAATATTCTGTACGGGATAATTCCATTGAAAAATCAAGAAGTGCCGCTTCTCTGCTGTTGATGCTGTGAGCAGCCTT... | JAUCMY010000001.1 | 22,960,103 | 22,972,903 | [
[
3253,
3335
],
[
6349,
6400
],
[
9623,
9704
],
[
9821,
9895
],
[
12561,
12655
],
[
12759,
12800
]
] | [
[
0,
3253,
4
],
[
3253,
3335,
1
],
[
3335,
5400,
4
],
[
5400,
7400,
0
],
[
7400,
9623,
4
],
[
9623,
9704,
1
],
[
9704,
9821,
4
],
[
9821,
9895,
1
],
[
9895,
12561,
4
],
[
... | tss_centered |
CTTCAAAACAAATCCGATGGGGTGTTTGGAAAACAAAGCATGGGCAAAGTGGGCTTTTATCACGTTTGGCCATGTGACTGATAAGGAATCAACCACTTTTTCTAACACTAAACAGGAAACTTTAGAAAAATGCTTTAATTCCTGGAGTACTACTAATAAAACTAATCCGGCTCTTTTCTCTGAAGTTTTGTTCCTAGTATCTCACAATCAGGGTAAATTTCCTGACACAGAATTTTAAAAAATTTCCAAAATTCCTTGTCGTCATAGCAGGGTAAGGCCAGAGCAGTACTTGTGTAAAGGTTATCTTGAAACAAAGCTGC... | NW_020447531.1 | 1,913,487 | 1,926,287 | [] | [
[
0,
12800,
5
]
] | uniform |
TGGGTGTGAAATGTTGTGTTCTGGTTAAAGCACGGGGTGACACTTCACCAAAGCCACGTGGAGCTTCTCAGCTGCCCTCCAGGCAGCGGTCTTGATGTGTTTTTTTAAACTTTTGAGATGTCCACCCTTAATAGCTTGGGTTATTACAGCAGAGAGATGCTAAGTGCCAGGCTTTGAAGGCGCATGGGAGCTGCACGAGGCTGGGACAGGCCGAATTCCTCCCCTTTCCCTGCTTCACTGCTGGACATGGACAGGGACTCCTCCAGCAGTGCCACGCTGGGAGCACAGCGGCAGCGTTCCCCAGGCAAGTGGTATTTTAA... | NC_088997.1 | 3,637,303 | 3,650,103 | [
[
6632,
6963
]
] | [
[
0,
5397,
5
],
[
5397,
7400,
0
],
[
7400,
12800,
4
]
] | tss_centered |
CAAACGGACTCCGAATTCGATGAAACCAAATTTGTTGGAAAGCTAGATACAAGGGCTAACACAATATTGAAATAAATATCAATAAGAAGCAAAATAGAAAAGGCCCATAAGAAAAAGGTGAGAACCCTTCCTTGGATAAGACCGGTAAAACCTCCAACTCCGAAAACATCATAGAAGACGCATGCGAACTCCGTTTTCGATGAACTCAAGCTTGTCATCAAGATGACCATAAGCTCTAAGACTCACAAAGAGAACTAAACAAGAATCAAGAAACATGATGCAAGGATGCAATGGTTTGAGCTCTCTACTAACGATACGAT... | CM022227.1 | 404,901,292 | 404,914,092 | [
[
1977,
1992
],
[
2847,
3012
],
[
3098,
3563
],
[
3728,
3830
],
[
3912,
4005
],
[
4093,
4303
],
[
4391,
4661
],
[
4732,
4834
],
[
4920,
4998
],
[
5093,
5163
],
[
6384,
6429
]
] | [
[
0,
1750,
5
],
[
1750,
1977,
4
],
[
1977,
1992,
1
],
[
1992,
2847,
4
],
[
2847,
3012,
1
],
[
3012,
3098,
4
],
[
3098,
3563,
1
],
[
3563,
3660,
4
],
[
3660,
9841,
0
],
[
... | tss_centered |
TATGACAACGTTACTCAGGAGCATTTGTGGGACATACTGGGCACATTGGATGTGGAAAATGGAGTAATTAATCTTTTAAAAGATATATATAGAGGTAACAGAGTGCTCATAAAATGGGAAAAAAATGTATCAGGGCCAGTAGAGATACAGCGGGGGCTTAGACAAGGATGTCCTCTGTCCCCTTTGTTGTTCGTGTTGTACCTGCAAGGGTTGGAGACCAAGCTAGAGGGGAGCGGACTAGGCTTCAACCTATCTTTTTTCAAGCAAGGGGAATTGATTAAACAGACATTACCGGGACTAATATACGCGGACGATATAGT... | JARKHS020003265.1 | 7,650 | 20,450 | [
[
6399,
6483
],
[
10052,
10164
]
] | [
[
0,
5400,
5
],
[
5400,
7400,
0
],
[
7400,
10052,
4
],
[
10052,
10164,
1
],
[
10164,
12800,
4
]
] | tss_centered |
GCTGAGCTCTTTTTGGTCAAAAAGATATTTCAGGCTCTTGTGATCCGTGTAAATGACAAATTTTACACCATATAAATAATGCCTCCACAGCTTCAATGCTAAAATCACCGCAGCTAATTCTAGATCATGGACTGGATATTTCTTCTCAGCGTCTTTCAATTGGCGGGACGCATAAGCTATGACCCGACCTTTCTGCATCAGAACACAACCAAGACCAATTCTAGACGCATCGCTGTAGATCACATACTCTTCTCCGCTTTGAGGTAGTACTAACACTGGCGCTTCACATAAAGCTTGCTTCAGTTTCTGAAATGCTTCTT... | CM042009.1 | 15,947,974 | 15,960,774 | [
[
6399,
6524
],
[
6581,
6686
],
[
6752,
6828
],
[
8608,
8824
],
[
9078,
9303
]
] | [
[
0,
5400,
5
],
[
5400,
7400,
0
],
[
7400,
7609,
5
],
[
7609,
9609,
0
],
[
9609,
12800,
5
]
] | tss_centered |
AAGAAGCACAGAGAGGCACAAACAGAATTGTGGCCAGAAACACACTTTCGGTGCATATACCTAGAAGACACAAGCAAGCAGGTTACCTGAGTAAGCTTTGAGAAGTGACAGTTGAGTTAAAAGACAGAAGGCAAGAGTTCACAATGACACTAAGAATGGGCCTCTGGCCGGCACTAGCCAAGAGAGGAGAACAACTTTATGTTTCTGAATGAGAGCTCCCAGATGTCAGAGCCTCTGGGGTCCTGCTTAGCCTAATTGTGATGCTGTGCTGGTGATAGGAAAAGAAGGGGGACTACATTTTCCCTTGAGAGAAAAAAAAA... | NC_089490.1 | 351,223,995 | 351,236,795 | [
[
3967,
4912
]
] | [
[
0,
1134,
0
],
[
1134,
3919,
5
],
[
3919,
3967,
4
],
[
3967,
4912,
1
],
[
4912,
5400,
4
],
[
5400,
7400,
0
],
[
7400,
12800,
5
]
] | tss_centered |
TTTTGTAGGTACCTACTCCACATACGAGTGAACATAGATGCGCTGTACTTTTACTGCTTGTAAAGTCTCTGCACACTGCCAAAGTACCCTACTGGGAGGTTTACACTGTGAAACCAAGCAGGTATATAAGTAGTGTCTCCCATGACCCTGGCAAAACTGAACTGCTTAAACTAATTTCTGTTAGGGAATTCATTCAAAAGAAAAACTCGTCATTAACCTTGGAGAAAAGAGAGTAAGGGAGGATAAAGAACGGACAAAAGCATTGCTATTGTTTATCTCAAAAGCCAATAAAGAGATTTAAAGTCAGTACTGCCCGGTTT... | NW_009216400.1 | 203 | 13,003 | [
[
617,
656
],
[
1547,
1741
],
[
2513,
2581
],
[
4985,
5116
],
[
5957,
6156
],
[
9458,
9666
]
] | [
[
0,
617,
4
],
[
617,
656,
1
],
[
656,
1547,
4
],
[
1547,
1741,
1
],
[
1741,
2513,
4
],
[
2513,
2581,
1
],
[
2581,
4985,
4
],
[
4985,
5116,
1
],
[
5116,
5957,
4
],
[
59... | cds_anchored |
GAGGAAATTTCCTGGATGAGGATTGGATTTACCACTCAAAATGTTGTCAAAGAGAAATTTAGTGCTTAAGTCATTATAAATCAATGCAGGCGGTTGGAATAATAATTCAATTGGCTGTCACCTGATTCCCAAAAACTGTTGATCTCACCACCGAGTAAATCTCCCAATGAATGCACAATCCCCCCTAATCTCTTATATAAAAAGGAGATGTCACACGTTTATTCCTAAATGTATGAAAGAGAAATCACATGCATGACGATGATGATACTGATTTTGCTGATAATATTGGTGTTACTAATTGTGCTAATGACGTTGATATT... | NW_021682037.1 | 190,004 | 202,804 | [
[
713,
1462
],
[
2120,
5146
],
[
6508,
6799
]
] | [
[
0,
713,
4
],
[
713,
1462,
1
],
[
1462,
2120,
4
],
[
2120,
5146,
1
],
[
5146,
6508,
4
],
[
6508,
6799,
1
],
[
6799,
12800,
4
]
] | uniform |
GGCTATGCTGGAAGGCAGGACTGGCTTTCAGCCCTGGGTCCAAGACAGCTTCATCTCTTGCTTTTCTGGTTCAGTGGGGGAGTTAAGCCAGATGATCACAATAACAAATCAGGACAGCCATAAAATTCACAATCATGTCTGATTTATAAAGATAGCATTGTATGAAGTACAATATATTTTCTGAGGTTATTAGTAACAGGCTTTATTCAGCCAGTAATTCCTGAATGGTGCCATGCACTTTACTGCTTGATTGATTTACATGCCCTTATGATTTTAATTAATACTCTTCTCATCAGAGACAATTACAAGTGATTGGAAAA... | VWZY01001625.1 | 13,001 | 25,801 | [] | [
[
0,
12800,
6
]
] | uniform |
TGTATGCACTTGTAGGTGAGATCCACAACAAAGCTATTTGAAGAAGAAAGAAGGACAATGGAGCCACATGAAGGAGACATTCAAGTCTGCATTTGGTTTGCTTAAGTTTTCAATCTTGAATATCTTGTTTTCATATCTCTATTGGATGTAATTAGGATTGATCATTGCATTTGAGCTTTTGTGATTGAGCTATGACTAATATTGATATTTTCTTTGATGATTTCCAATTTCCTAGCTACAACATCCTTAATTGCTTGTTTCCCTCTTGAAGTGGAAGGCTCACCTATCACTGGCATCATCACACTGTATCTTGATTTCTT... | BSEH01000009.1 | 718,290,514 | 718,303,314 | [
[
6129,
6201
],
[
6328,
6400
]
] | [
[
0,
5201,
5
],
[
5201,
7400,
0
],
[
7400,
12800,
5
]
] | tss_centered |
AAATTTGAAAAATTCATTCATACGCATGTATATCAAGTGTTCGATATATATATCTACATAGATAGTGCACTTATTAAATTCAATGTTAATTTTGAGCAGGTATTTTTTCTTTTCTACATTGTAAGTAAAAAATGTGTATTGCATAGCATACTAATTTTCTGAAAAGACTTCTTACTTTCGGAAATTTAGTGGTGTACTTTAATAGATAGATTTAAATATCAGTCATACAAGAATAACGTATCAAATTATTTGTTATAAAGCAAATAGAAGGTCATTTGTGTCGCCAGTCATAACTTGGGTTAAGTTAATTTTACTTTCGG... | CAJPWZ010002827.1 | 11,731 | 24,531 | [
[
1662,
2997
],
[
6503,
7370
]
] | [
[
0,
663,
5
],
[
663,
2663,
0
],
[
2663,
2997,
1
],
[
2997,
5504,
5
],
[
5504,
7504,
0
],
[
7504,
12800,
5
]
] | cds_anchored |
CTCACCTCAGTCCTAAAAGGTTTATCCCTTATCCTCAAACTATGACCCCTAGTTCTGGACTCCCCCACCATCAGGAACATTCTTTCTGAGTCTACCCTGTCTAATCCTGTTAGAATTTTATACGTTTCTATGAGATCCCCTCTCACTCTTCTAAACTCCAATGAATATAATCCTAACCAACTTTCCTCATATGACAGTCCCACCGTCCCAGGCCTGATAAATCTTCACTGCACTTCTCCATAGCAAGAATCTTGTTCCTCAGATAAGGACACAAAAACTGCAGGTATGGCCTCATAAATGCTCTGTACAATTGCAGTGAA... | BFAA01006592.1 | 45,490 | 58,290 | [
[
1908,
2114
],
[
2986,
3206
],
[
9114,
9175
],
[
10707,
10774
],
[
12275,
12405
]
] | [
[
0,
1908,
4
],
[
1908,
2114,
1
],
[
2114,
2986,
4
],
[
2986,
3206,
1
],
[
3206,
9114,
4
],
[
9114,
9175,
1
],
[
9175,
10707,
4
],
[
10707,
10774,
1
],
[
10774,
12275,
4
],
... | uniform |
End of preview. Expand in Data Studio
RefSeq 100B cross-species transfer dataset
The train split contains exactly 100B bases in 12.8K windows and excludes
all assemblies listed in dataset_manifest.json for human and mouse.
The validation split is the 50,000-window human validation split from the
GENCODE-human 12.8K dataset. There is no test split.
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