Source attribution
- SimpleFold: Wang et al., SimpleFold: Folding Proteins is Simpler than You Think. Paper, official code and target lists. Author target lists are identified by retrieval URL and SHA-256 in the source ledger. Apple's software MIT license is not asserted to replace data licenses.
- AFESM: Yeo et al., Metagenomic-scale analysis of the predicted protein structure universe. Cluster resource, analysis repository.
- AlphaFold Protein Structure Database: Jumper et al. and Varadi et al. AFDB. Downloaded AFDB structure headers specify CC BY 4.0. Keep original attribution with redistributed coordinates.
- ESM Metagenomic Atlas: Lin et al., Evolutionary-scale prediction of atomic-level protein structure with a language model. Source and license. Atlas data are CC BY 4.0; copyright Meta Platforms, Inc.
- Protein Data Bank: wwPDB. Each derived chain record will retain its PDB accession, chain identity, initial release date, source locator, and coordinate hash.
The repository uses source-specific data licenses. Dataset preparation does not transfer authorship of the original structures or predictions.
- AFDB bulk mirror: timodonnell/afdb-1.6M, derived from AFDB-24M, pinned revision
a7ededeb7caeaef3892f40f2e4df3bb9236b02f8. Source coordinates are AFDB v4, CC BY 4.0; source structural cluster labels originate from the Steinegger lab AFDB clustering.