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The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1539, in _prepare_split_single
for key, record in generator:
^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 621, in wrapped
for item in generator(*args, **kwargs):
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 131, in _generate_examples
for example_idx, example in enumerate(self._get_pipeline_from_tar(tar_path, tar_iterator)):
~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 32, in _get_pipeline_from_tar
for filename, f in tar_iterator:
^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/track.py", line 49, in __iter__
for x in self.generator(*self.args):
~~~~~~~~~~~~~~^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 1419, in _iter_from_urlpath
with xopen(urlpath, "rb", download_config=download_config, block_size=0) as f:
~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 976, in xopen
file_obj = fs.open(paths[0], mode)
File "<string>", line 3, in open
File "/usr/local/lib/python3.14/unittest/mock.py", line 1176, in __call__
return self._mock_call(*args, **kwargs)
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/unittest/mock.py", line 1180, in _mock_call
return self._execute_mock_call(*args, **kwargs)
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/unittest/mock.py", line 1247, in _execute_mock_call
result = effect(*args, **kwargs)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 794, in wrapped
tracker.files[urlpath] = {"read": 0, "size": int(f.size)}
~~~^^^^^^^^
TypeError: int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1379, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 956, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1401, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1579, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
safetensors unknown | __key__ string | __url__ string |
|---|---|---|
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"UAAAAAAAAAB7ImVtYmVkZGluZ3MiOnsiZHR5cGUiOiJCRjE2Iiwic2hhcGUiOlsyOTgsMjU2MF0sImRhdGFfb2Zmc2V0cyI6WzA(...TRUNCATED) | 00017553df65c99653b7b9f1fa42e52a65e4de5895d048aaaea046154576330e | hf://datasets/kevinlu4588/p2t6@9c0dfca235d7caf6f06f7589a5b3d9e2836191ee/shards/shard-00000.tar |
"UAAAAAAAAAB7ImVtYmVkZGluZ3MiOnsiZHR5cGUiOiJCRjE2Iiwic2hhcGUiOlsxMjIsMjU2MF0sImRhdGFfb2Zmc2V0cyI6WzA(...TRUNCATED) | 00018139463333edc9b760d410adb2cffa2bdd1f605f325ab41a2be6d671d31a | hf://datasets/kevinlu4588/p2t6@9c0dfca235d7caf6f06f7589a5b3d9e2836191ee/shards/shard-00000.tar |
"UAAAAAAAAAB7ImVtYmVkZGluZ3MiOnsiZHR5cGUiOiJCRjE2Iiwic2hhcGUiOlsxNDEsMjU2MF0sImRhdGFfb2Zmc2V0cyI6WzA(...TRUNCATED) | 00020dba366f25f136842c57236d92dd0690fe7b28a482e6d15b144479680294 | hf://datasets/kevinlu4588/p2t6@9c0dfca235d7caf6f06f7589a5b3d9e2836191ee/shards/shard-00000.tar |
"UAAAAAAAAAB7ImVtYmVkZGluZ3MiOnsiZHR5cGUiOiJCRjE2Iiwic2hhcGUiOls0MDQsMjU2MF0sImRhdGFfb2Zmc2V0cyI6WzA(...TRUNCATED) | 0002587d86385d99aa9816a0ee983ee22a8e56c46dab754d39b5282160eb82ed | hf://datasets/kevinlu4588/p2t6@9c0dfca235d7caf6f06f7589a5b3d9e2836191ee/shards/shard-00000.tar |
"UAAAAAAAAAB7ImVtYmVkZGluZ3MiOnsiZHR5cGUiOiJCRjE2Iiwic2hhcGUiOlsxOTIsMjU2MF0sImRhdGFfb2Zmc2V0cyI6WzA(...TRUNCATED) | 00026bcb24f644e8499cca731ee438ce9126b4d89ec02f0c0681c089efbd2742 | hf://datasets/kevinlu4588/p2t6@9c0dfca235d7caf6f06f7589a5b3d9e2836191ee/shards/shard-00000.tar |
End of preview.
p2t6: ESMC-6B residue embeddings for the Prot2Text dataset
Per-residue ESMC-6B embeddings (final layer, after all 80 layers; BOS/EOS removed) for 206,152 unique sequences of the Prot2Text / Prot2Text-V2 Swiss-Prot dataset (habdine/Prot2Text-Data splits).
shards/shard-NNNNN.tar: members<sha256(sequence)>.safetensors, each{'embeddings': bfloat16 [L, 2560]}index.parquet:sequence_sha256, shard, length, splits, accessions(sha256 of the ASCII amino-acid sequence)
Coverage by split (sequences present / in split): train 202,991 / 248,315, validation 300 / 4,172, test 2,861 / 4,203. Not every training protein is included (unencoded sequences are mostly long ones).
Encoder: ESMC-6B weights as packaged in biohub/ESMFold2 (revision 69869f737beffec5294845ede23db5fc0b4f509e). Produced for the LLMFold project. The embeddings are derived from ESMC-6B; check the ESM C model license for your use.
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