context_id stringclasses 250
values | ground_truth_concepts listlengths 1 1 | ground_truth_count int64 1 1 | input stringlengths 1.05k 12.5k | input_fields dict | input_type stringclasses 1
value | output stringlengths 7 12 | source_sample_idx stringclasses 250
values | split stringclasses 1
value | codiesp_label stringclasses 1
value | alignment dict |
|---|---|---|---|---|---|---|---|---|---|---|
S0004-06142005000500011-1 | [
"S22.49XA"
] | 1 | {"entity": "costal fractures", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by ciga... | {
"entity": "costal fractures",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's dise... | text | ["S22.49XA"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"R69"
] | 1 | {"entity": "Dupuytren's disease", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by c... | {
"entity": "Dupuytren's disease",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's d... | text | ["R69"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"F17.210"
] | 1 | {"entity": "cigarette smoking", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cig... | {
"entity": "cigarette smoking",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's dis... | text | ["F17.210"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"R31.9"
] | 1 | {"entity": "hematuria", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.", "document_context": "Patient of 70 years old, reti... | {
"entity": "hematuria",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"document_context": "Patient of 70 ye... | text | ["R31.9"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"located_english_span": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and p... |
S0004-06142005000500011-1 | [
"F17.200"
] | 1 | {"entity": "by cigarette smoking", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by ... | {
"entity": "by cigarette smoking",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's ... | text | ["F17.200"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"R31.29"
] | 1 | {"entity": "persistent microhematuria", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.", "document_context": "Patient of 70... | {
"entity": "persistent microhematuria",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"document_context": "... | text | ["R31.29"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"located_english_span": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and p... |
S0004-06142005000500011-1 | [
"R31.0"
] | 1 | {"entity": "macroscopic post-voiding hematuria", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.", "document_context": "Pati... | {
"entity": "macroscopic post-voiding hematuria",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"document_co... | text | ["R31.0"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and persistent microhematuria later, with normal voiding.",
"located_english_span": "It is derived from Primary Care because it presents macroscopic post-voiding hematuria on one occasion and p... |
S0004-06142005000500011-1 | [
"E11.9"
] | 1 | {"entity": "type II", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smo... | {
"entity": "type II",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by ci... | text | ["E11.9"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"M48.30"
] | 1 | {"entity": "vertebral and costal fractures", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's d... | {
"entity": "vertebral and costal fractures",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Du... | text | ["M48.30"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"S22.49XA"
] | 1 | {"entity": "vertebral and costal fractures", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's d... | {
"entity": "vertebral and costal fractures",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Du... | text | ["S22.49XA"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"C67.9"
] | 1 | {"entity": "superficial urothelial carcinoma of the bladder", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Cystoscopy revealed the existence of small bladder tumors, performing transurethral resection with the anatomopathological result of superficial urothelial carcinoma of the bl... | {
"entity": "superficial urothelial carcinoma of the bladder",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Cystoscopy revealed the existence of small bladder tumors, performing transurethral resection with the anatomopathological result of superficial urothelial carcinom... | text | ["C67.9"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Cystoscopy revealed the existence of small bladder tumors, performing transurethral resection with the anatomopathological result of superficial urothelial carcinoma of the bladder.",
"located_english_span": "Cystoscopy revealed the existence of small bladder tumors, performing transurethral res... |
S0004-06142005000500011-1 | [
"M72.0"
] | 1 | {"entity": "intervened of Dupuytren's disease by cigarette smoking in right hand type II", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and... | {
"entity": "intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with ve... | text | ["M72.0"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Patient of 70 years old, retired miner, without known drug allergies, presenting as personal history: old occupational accident with vertebral and costal fractures; intervened of Dupuytren's disease by cigarette smoking in right hand type II",
"located_english_span": "Patient of 70 years old, re... |
S0004-06142005000500011-1 | [
"D29.1"
] | 1 | {"entity": "prostate adenoma", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "Physical examination showed a good general condition, with normal abdomen and genitalia; rectal examination compatible with grade I/IV prostate adenoma.", "document_context": "Patient of 70 years old, retir... | {
"entity": "prostate adenoma",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "Physical examination showed a good general condition, with normal abdomen and genitalia; rectal examination compatible with grade I/IV prostate adenoma.",
"document_context": "Patient of 70 yea... | text | ["D29.1"] | S0004-06142005000500011-1 | test | DIAGNOSTICO | {
"english_locus": "Physical examination showed a good general condition, with normal abdomen and genitalia; rectal examination compatible with grade I/IV prostate adenoma.",
"located_english_span": "Physical examination showed a good general condition, with normal abdomen and genitalia; rectal examination compatib... |
S0004-06142005000900014-1 | [
"N32.9"
] | 1 | {"entity": "bladder lesions", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomina... | {
"entity": "bladder lesions",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negativ... | text | ["N32.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"R30.0"
] | 1 | {"entity": "voiding", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultras... | {
"entity": "voiding",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdom... | text | ["R30.0"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"R31.9"
] | 1 | {"entity": "self-limiting hematuria", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. ... | {
"entity": "self-limiting hematuria",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was... | text | ["R31.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"D30.3"
] | 1 | {"entity": "bladder leiomyoma", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomi... | {
"entity": "bladder leiomyoma",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negat... | text | ["D30.3"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"R35.0"
] | 1 | {"entity": "pollakiuria", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ul... | {
"entity": "pollakiuria",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. A... | text | ["R35.0"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"N32.9"
] | 1 | {"entity": "bladder lesions", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomina... | {
"entity": "bladder lesions",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negativ... | text | ["N32.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"I96"
] | 1 | {"entity": "necrosis", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultra... | {
"entity": "necrosis",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdo... | text | ["I96"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"N32.9"
] | 1 | {"entity": "bladder lesions", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomina... | {
"entity": "bladder lesions",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negativ... | text | ["N32.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"N32.9"
] | 1 | {"entity": "bladder lesions", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomina... | {
"entity": "bladder lesions",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negativ... | text | ["N32.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142005000900014-1 | [
"N32.9"
] | 1 | {"entity": "bladder lesions", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdomina... | {
"entity": "bladder lesions",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negativ... | text | ["N32.9"] | S0004-06142005000900014-1 | test | DIAGNOSTICO | {
"english_locus": "A seventeen-year-old male with no history of interest presented with pollakiuria, voiding, tenesmus and self-limiting hematuria. 30-50 urine samples per field were analyzed. Urocultiva was negative. Abdominal ultrasound showed a small diameter lesion of half centimeter, solid with anterior hyperec... |
S0004-06142006000100010-1 | [
"M54.5"
] | 1 | {"entity": "right lumbar pain", "type": "diagnosis", "row_context": "", "column_context": "", "original_context": "A 62-year-old female patient, obese, with diabetes and hypertension for one year. Six months ago she complained of low intensity sporadic right lumbar pain. Physical examination was normal. Abdominal ultra... | {
"entity": "right lumbar pain",
"type": "diagnosis",
"row_context": "",
"column_context": "",
"original_context": "A 62-year-old female patient, obese, with diabetes and hypertension for one year. Six months ago she complained of low intensity sporadic right lumbar pain. Physical examination was normal. Abdo... | text | ["M54.5"] | S0004-06142006000100010-1 | test | DIAGNOSTICO | {
"english_locus": "A 62-year-old female patient, obese, with diabetes and hypertension for one year. Six months ago she complained of low intensity sporadic right lumbar pain. Physical examination was normal. Abdominal ultrasound showed a hypoechogenic right adrenal mass of 80 mm compressing the upper pole of the ri... |
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CodiEsp Diagnosis Grounding Data
This repository contains the prepared data files needed to reproduce the CodiEsp-D diagnosis grounding experiments. It is a data artifact only: it does not include experiment code, Slurm scripts, model outputs, logs, or raw source archives.
Directory Layout
data/codiesp/
facts_test_full_exact.jsonl
evidence_relocations_full_exact.jsonl
stats_full_exact.json
test_docs_full_exact.txt
spotcheck_50_full_exact.tsv
index/icd10cm_fy2018/
icd10cm_fy2018_retrieval.jsonl
code_metadata.jsonl
inventory_manifest.json
self_retrieval_probe.json
schema/icd10cm/
normalization_map.json
vocab_family.json
vocab_role.json
vocab_qualifier.json
vocab_scope.json
vocab_temporal.json
vocab_temporal_raw.json
Main Evaluation File
data/codiesp/facts_test_full_exact.jsonl
This is the prepared CodiEsp-D test set used by the second-domain experiments. It contains the exact-English-relocation slice of the official CodiEsp test split.
Summary from data/codiesp/stats_full_exact.json:
- Source documents: 250
- Target facts: 3,144
- Unique gold diagnosis codes: 958
- Exact relocation parse rate: 1.0
- Exact substring rate: 1.0
Each JSONL row contains the clinical mention, English context fields, document identifier, one gold diagnosis code, and relocation metadata.
Relocation Files
data/codiesp/evidence_relocations_full_exact.jsonl
data/codiesp/spotcheck_50_full_exact.tsv
These files document how Spanish CodiEsp diagnosis spans were relocated into the English context used for retrieval. The evaluation JSONL keeps only facts with exact English substring relocation.
Retrieval Inventory
index/icd10cm_fy2018/icd10cm_fy2018_retrieval.jsonl
This is the candidate label inventory used by retrieval. It contains 71,344 candidate diagnosis-code entries. Each entry contains a code identifier, canonical English label, retrieval/documentation text, and structural metadata.
Inventory construction metadata is in:
index/icd10cm_fy2018/inventory_manifest.json
Schema Files
schema/icd10cm/
This directory contains the controlled vocabularies and normalization map used by the CodiEsp structured grounding schema.
Not Included
The following are intentionally excluded:
- Experiment code and Slurm scripts.
- Model outputs and intermediate run files.
- Slurm logs.
- Raw downloaded CodiEsp or diagnosis-code archives.
- Python bytecode caches.
MANIFEST.tsv lists the files in this data artifact with byte sizes.
- Downloads last month
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