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chorus-backgrounds

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chorus-backgrounds

3.73 GB

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1 contributor

History: 116 commits

lucapinello's picture

sei: 21,947 tracks (was 40), nucleosome-normalized

d579c13 verified 3 months ago

.gitattributes

2.5 kB
initial commit 7 months ago
alphagenome_pertrack.npz

279 MB
xet

alphagenome_pertrack.npz: Unified background rebuild, schema 4 (build_campaign 2026-08-06). Fixes the reservoir-thinning defect: a uniform m-of-N subsample retained the population maximum with probability exactly m/N, so 9 of 19 (oracle, layer) reservoir pairs had understated ceilings -- AlphaGenome gene_expression by up to 8.3x. effect and summary layers are now exact; perbin keeps an exact top-K tail. Cherimoya is the 5-fold CATv1 ensemble. Activity provenance is derived per oracle rather than stamped uniformly. 3 months ago
borzoi_pertrack.npz

804 MB
xet

borzoi_pertrack.npz: Unified background rebuild, schema 4 (build_campaign 2026-08-06). Fixes the reservoir-thinning defect: a uniform m-of-N subsample retained the population maximum with probability exactly m/N, so 9 of 19 (oracle, layer) reservoir pairs had understated ceilings -- AlphaGenome gene_expression by up to 8.3x. effect and summary layers are now exact; perbin keeps an exact top-K tail. Cherimoya is the 5-fold CATv1 ensemble. Activity provenance is derived per oracle rather than stamped uniformly. 3 months ago
cherimoya_ensemble_pertrack.npz

162 MB
xet

cherimoya null for fold ensemble (schema 4, 1518 tracks) 3 months ago
cherimoya_pertrack.npz

162 MB
xet

cherimoya fold 0: add layers_per_row (v0.7.1 schema) 3 months ago
chrombpnet_pertrack.npz

79.5 MB
xet

chrombpnet_pertrack.npz: Repair build_config storage shape to (1,) on the five layers_per_row-stamped artefacts. The first stamp wrote a 0-d array, which raises IndexError in readers that do build_config[0]. CDF matrices untouched throughout. 3 months ago
dhs_vocabulary_hg38.txt.gz

90.8 MB
xet

Add Meuleman et al. 2020 DHS Index (hg38) — input for DHS-augmented chrombpnet CDF rebuild 6 months ago
enformer_pertrack.npz

557 MB
xet

enformer_pertrack.npz: Unified background rebuild, schema 4 (build_campaign 2026-08-06). Fixes the reservoir-thinning defect: a uniform m-of-N subsample retained the population maximum with probability exactly m/N, so 9 of 19 (oracle, layer) reservoir pairs had understated ceilings -- AlphaGenome gene_expression by up to 8.3x. effect and summary layers are now exact; perbin keeps an exact top-K tail. Cherimoya is the 5-fold CATv1 ensemble. Activity provenance is derived per oracle rather than stamped uniformly. 3 months ago
epinformerseq_pertrack.npz

2.31 MB
xet

epinformerseq_pertrack.npz: Repair build_config storage shape to (1,) on the five layers_per_row-stamped artefacts. The first stamp wrote a 0-d array, which raises IndexError in readers that do build_config[0]. CDF matrices untouched throughout. 3 months ago
legnet_pertrack.npz

201 kB
xet

legnet_pertrack.npz: Repair build_config storage shape to (1,) on the five layers_per_row-stamped artefacts. The first stamp wrote a 0-d array, which raises IndexError in readers that do build_config[0]. CDF matrices untouched throughout. 3 months ago
sei_pertrack.npz

1.6 GB
xet

sei: 21,947 tracks (was 40), nucleosome-normalized 3 months ago