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History: 11 commits

manuquadros

Re-run organism-class migration with genus fallback

8f58797 verified 26 days ago

.claude
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback 26 days ago
.mypy_cache
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback 26 days ago
.opencode
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 2) 26 days ago
.worktrees
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 2) 26 days ago
brenda_references
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 3) 26 days ago
data
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 3) 26 days ago
design
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
site
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
tmp
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
.gitattributes

4.67 kB
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 3) 26 days ago
documents.json

1.12 GB
xet

Re-run organism-class migration with genus fallback 26 days ago
enzyme_negative_pool.json

44.3 MB
xet

replace enzyme-negative pool: pmc_id/year bugs in collect_microbiology_sample.py fixed, 982 docs (was 984, digest unchanged eb8c71690e8e) about 2 months ago
models.csv

25 kB
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
opencode.json

195 Bytes
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
package.json

220 Bytes
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
pmc_linguistics_articles.json

76.9 MB
xet

Add the three splits and the linguistics noise pool about 1 month ago
pyrightconfig.json

89 Bytes
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
test_data.csv

79.1 MB
xet

Re-run organism-class migration with genus fallback 26 days ago
training_data.csv

563 MB
xet

Re-run organism-class migration with genus fallback 26 days ago
unavailable_pubmed_ids.csv

5.8 kB
Restore species dropped from strain-linked documents; re-run organism-class migration with genus fallback (part 4) 26 days ago
validation_data.csv

83.5 MB
xet

Re-run organism-class migration with genus fallback 26 days ago