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public void setHighLevelMeta(int i) { String meta = "<Table>\n"; meta = meta + "<pageNumInDoc>" + (i + 1) + "</pageNumInDoc>\n"; m_caption = replaceAllSpecialChracters(m_caption); meta = meta + "<TableCaption>" + m_caption + "</TableCaption>\n"; String location = ""; if (m_topCaptionLocation) location...
java
public void setEmptyMetadataStructureLevel(int YNum, int cc, List<TextPiece> wordsOfAPage, DocInfo m_docInfo) { String meta = ""; meta = "<TableColumnHeading>\n" + "</TableColumnHeading>" + "\n"; meta = meta + "<TableContent>\n"; meta = meta + "</TableContent>" + "\n"; meta = meta + "<TableRowHe...
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public static String replaceAllSpecialChracters(String toBeReplaced) { toBeReplaced = toBeReplaced.replaceAll("&", "&amp;"); toBeReplaced = toBeReplaced.replaceAll("<", "&lt;"); toBeReplaced = toBeReplaced.replaceAll(">", "&gt;"); toBeReplaced = toBeReplaced.replaceAll("\"", "&quot;"); toBeReplaced = toBeRepl...
java
public void addPreviousPunctuation(Parse punct) { if (this.prevPunctSet == null) { this.prevPunctSet = new LinkedHashSet(); } prevPunctSet.add(punct); }
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public void addNextPunctuation(Parse punct) { if (this.nextPunctSet == null) { this.nextPunctSet = new LinkedHashSet(); } nextPunctSet.add(punct); }
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public void insert(final Parse constituent) { Span ic = constituent.span; if (span.contains(ic)) { //double oprob=c.prob; int pi=0; int pn = parts.size(); for (; pi < pn; pi++) { Parse subPart = (Parse) parts.get(pi); //System.err.println("Parse.insert:con="+constituent+"...
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public double getTagSequenceProb() { //System.err.println("Parse.getTagSequenceProb: "+type+" "+this); if (parts.size() == 1 && ((Parse) parts.get(0)).type.equals(ParserME.TOK_NODE)) { //System.err.println(this+" "+prob); return (Math.log(prob)); } else if (parts.size() == 0) { System....
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public void updateHeads(HeadRules rules) { if (parts != null && parts.size() != 0) { for (int pi=0,pn=parts.size();pi<pn;pi++) { Parse c = (Parse) parts.get(pi); c.updateHeads(rules); } this.head = rules.getHead((Parse[]) parts.toArray(new Parse[parts.size()]), type); if (hea...
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public boolean isPosTag() { return (parts.size() == 1 && ((Parse) parts.get(0)).getType().equals(ParserME.TOK_NODE)); }
java
public Parse getCommonParent(Parse node) { if (this == node) { return parent; } Set parents = new HashSet(); Parse cparent = this; while(cparent != null) { parents.add(cparent); cparent = cparent.getParent(); } while (node != null) { if (parents.contains(node)) { ...
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protected int countCorrectPairs(MatchData data) { // count the number of times each id appears in each source */ Map counter = new HashMap(); for (int i=0; i<data.numSources(); i++) { String src = data.getSource(i); for (int j=0; j<data.numInstances(src); j++){ String id = data.getInstance(src, j).get...
java
protected void loadGrams(DataInputStream input) throws IOException { gramSet = new HashSet(); try { while(true) { int gramLength=input.readInt(); int[] words = new int[gramLength]; for (int wi=0;wi<gramLength;wi++) { words[wi]=input.readInt(); } gra...
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public boolean contains(String[] words) { if (words.length == 1) { return wordMap.contains(words[0]); } else { NGram ngram = nGramFactory.createNGram(words); if (ngram == null) { return false; } else { return gramSet.contains(ngram); } } }
java
public static void main(String[] args) throws IOException { if (args.length == 0) { System.err.println("Usage: Dictionary dictionary_file"); System.exit(0); } Dictionary dict = new Dictionary(args[0]); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String line;...
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public Title getSectionHeading() { if (Section_Type.featOkTst && ((Section_Type)jcasType).casFeat_sectionHeading == null) jcasType.jcas.throwFeatMissing("sectionHeading", "de.julielab.jules.types.Section"); return (Title)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Section_Type)j...
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public void setSectionHeading(Title v) { if (Section_Type.featOkTst && ((Section_Type)jcasType).casFeat_sectionHeading == null) jcasType.jcas.throwFeatMissing("sectionHeading", "de.julielab.jules.types.Section"); jcasType.ll_cas.ll_setRefValue(addr, ((Section_Type)jcasType).casFeatCode_sectionHeading, jca...
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public String getSectionId() { if (Section_Type.featOkTst && ((Section_Type)jcasType).casFeat_sectionId == null) jcasType.jcas.throwFeatMissing("sectionId", "de.julielab.jules.types.Section"); return jcasType.ll_cas.ll_getStringValue(addr, ((Section_Type)jcasType).casFeatCode_sectionId);}
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public void setSectionId(String v) { if (Section_Type.featOkTst && ((Section_Type)jcasType).casFeat_sectionId == null) jcasType.jcas.throwFeatMissing("sectionId", "de.julielab.jules.types.Section"); jcasType.ll_cas.ll_setStringValue(addr, ((Section_Type)jcasType).casFeatCode_sectionId, v);}
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final public void train(StringWrapperIterator i) { Set seenTokens = new HashSet(); while (i.hasNext()) { StringWrapper s = (StringWrapper)i.next(); BagOfTokens bag = asBagOfTokens(i.nextStringWrapper()); for (Iterator j=bag.tokenIterator(); j.hasNext(); ) { Token tokj = (Token)j.next(); totalToke...
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final public StringWrapper prepare(String s) { BagOfTokens bag = new BagOfTokens(s, tokenizer.tokenize(s)); double totalWeight = bag.getTotalWeight(); for (Iterator i=bag.tokenIterator(); i.hasNext(); ) { Token tok = (Token)i.next(); double freq = bag.getWeight(tok); bag.setWeight( tok, smoothedProbabili...
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protected double backgroundProb(Token tok) { Integer freqInteger = (Integer)backgroundFrequency.get(tok); double freq = freqInteger==null ? 0 : freqInteger.intValue(); return freq/totalTokens; }
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final public double score(StringWrapper s,StringWrapper t) { BagOfTokens sBag = (BagOfTokens)s; BagOfTokens tBag = (BagOfTokens)t; double sum = 0; for (Iterator i = sBag.tokenIterator(); i.hasNext(); ) { Token tok = (Token)i.next(); if (tBag.contains(tok)) { double ps = sBag.getWeight(tok); ...
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public void prepare(StringDistance[] innerDistances) { if (!fieldsPrepared) { for (int i=0; i<size(); i++) { StringDistance d = innerDistances[ getDistanceLearnerIndex(i) ]; set( i, d.prepare( get(i).unwrap() ) ); } } }
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public String getMod() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_mod == null) jcasType.jcas.throwFeatMissing("mod", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_mod);}
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public void setMod(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_mod == null) jcasType.jcas.throwFeatMissing("mod", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_mod, v);}
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public String getComment() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_comment == null) jcasType.jcas.throwFeatMissing("comment", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_comment);}
java
public void setComment(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_comment == null) jcasType.jcas.throwFeatMissing("comment", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_comment, v);}
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public String getAnchor_val() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_anchor_val == null) jcasType.jcas.throwFeatMissing("anchor_val", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_anchor_val);}
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public void setAnchor_val(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_anchor_val == null) jcasType.jcas.throwFeatMissing("anchor_val", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_anchor_val, v);}
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public String getVal() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_val == null) jcasType.jcas.throwFeatMissing("val", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_val);}
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public void setVal(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_val == null) jcasType.jcas.throwFeatMissing("val", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_val, v);}
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public String getSet() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_set == null) jcasType.jcas.throwFeatMissing("set", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_set);}
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public void setSet(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_set == null) jcasType.jcas.throwFeatMissing("set", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_set, v);}
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public String getNon_specific() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_non_specific == null) jcasType.jcas.throwFeatMissing("non_specific", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_non_specific);}
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public void setNon_specific(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_non_specific == null) jcasType.jcas.throwFeatMissing("non_specific", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_non_specific, v);}
java
public String getAnchor_dir() { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_anchor_dir == null) jcasType.jcas.throwFeatMissing("anchor_dir", "de.julielab.jules.types.ace.Timex2"); return jcasType.ll_cas.ll_getStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_anchor_dir);}
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public void setAnchor_dir(String v) { if (Timex2_Type.featOkTst && ((Timex2_Type)jcasType).casFeat_anchor_dir == null) jcasType.jcas.throwFeatMissing("anchor_dir", "de.julielab.jules.types.ace.Timex2"); jcasType.ll_cas.ll_setStringValue(addr, ((Timex2_Type)jcasType).casFeatCode_anchor_dir, v);}
java
public String getEvent_type() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_event_type == null) jcasType.jcas.throwFeatMissing("event_type", "ch.epfl.bbp.uima.genia.Event"); return jcasType.ll_cas.ll_getStringValue(addr, ((Event_Type)jcasType).casFeatCode_event_type);}
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public void setEvent_type(String v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_event_type == null) jcasType.jcas.throwFeatMissing("event_type", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setStringValue(addr, ((Event_Type)jcasType).casFeatCode_event_type, v);}
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public FSArray getThemes_protein() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_protein == null) jcasType.jcas.throwFeatMissing("themes_protein", "ch.epfl.bbp.uima.genia.Event"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasTy...
java
public void setThemes_protein(FSArray v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_protein == null) jcasType.jcas.throwFeatMissing("themes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setRefValue(addr, ((Event_Type)jcasType).casFeatCode_themes_protein, jcasType.l...
java
public Protein getThemes_protein(int i) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_protein == null) jcasType.jcas.throwFeatMissing("themes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeatC...
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public void setThemes_protein(int i, Protein v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_protein == null) jcasType.jcas.throwFeatMissing("themes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType)...
java
public FSArray getCauses_protein() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_protein == null) jcasType.jcas.throwFeatMissing("causes_protein", "ch.epfl.bbp.uima.genia.Event"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasTy...
java
public void setCauses_protein(FSArray v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_protein == null) jcasType.jcas.throwFeatMissing("causes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setRefValue(addr, ((Event_Type)jcasType).casFeatCode_causes_protein, jcasType.l...
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public Protein getCauses_protein(int i) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_protein == null) jcasType.jcas.throwFeatMissing("causes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeatC...
java
public void setCauses_protein(int i, Protein v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_protein == null) jcasType.jcas.throwFeatMissing("causes_protein", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType)...
java
public String getSite() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_site == null) jcasType.jcas.throwFeatMissing("site", "ch.epfl.bbp.uima.genia.Event"); return jcasType.ll_cas.ll_getStringValue(addr, ((Event_Type)jcasType).casFeatCode_site);}
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public void setSite(String v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_site == null) jcasType.jcas.throwFeatMissing("site", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setStringValue(addr, ((Event_Type)jcasType).casFeatCode_site, v);}
java
public FSArray getThemes_event() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_event == null) jcasType.jcas.throwFeatMissing("themes_event", "ch.epfl.bbp.uima.genia.Event"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).ca...
java
public void setThemes_event(FSArray v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_event == null) jcasType.jcas.throwFeatMissing("themes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setRefValue(addr, ((Event_Type)jcasType).casFeatCode_themes_event, jcasType.ll_cas.ll...
java
public Event getThemes_event(int i) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_event == null) jcasType.jcas.throwFeatMissing("themes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeatCode_them...
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public void setThemes_event(int i, Event v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_themes_event == null) jcasType.jcas.throwFeatMissing("themes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeat...
java
public FSArray getCauses_event() { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_event == null) jcasType.jcas.throwFeatMissing("causes_event", "ch.epfl.bbp.uima.genia.Event"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).ca...
java
public void setCauses_event(FSArray v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_event == null) jcasType.jcas.throwFeatMissing("causes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.ll_cas.ll_setRefValue(addr, ((Event_Type)jcasType).casFeatCode_causes_event, jcasType.ll_cas.ll...
java
public Event getCauses_event(int i) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_event == null) jcasType.jcas.throwFeatMissing("causes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeatCode_caus...
java
public void setCauses_event(int i, Event v) { if (Event_Type.featOkTst && ((Event_Type)jcasType).casFeat_causes_event == null) jcasType.jcas.throwFeatMissing("causes_event", "ch.epfl.bbp.uima.genia.Event"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Event_Type)jcasType).casFeat...
java
private String punct(Parse punct, int i) { StringBuffer feat = new StringBuffer(5); feat.append(i).append("="); feat.append(punct.getType()); return (feat.toString()); }
java
public String getGender() { if (NounFeats_Type.featOkTst && ((NounFeats_Type)jcasType).casFeat_gender == null) jcasType.jcas.throwFeatMissing("gender", "de.julielab.jules.types.NounFeats"); return jcasType.ll_cas.ll_getStringValue(addr, ((NounFeats_Type)jcasType).casFeatCode_gender);}
java
public String getLdcatr() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_ldcatr == null) jcasType.jcas.throwFeatMissing("ldcatr", "de.julielab.jules.types.ace.EntityMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((EntityMention_Type)jcasType).casFeatCode_ldcatr);}
java
public void setLdcatr(String v) { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_ldcatr == null) jcasType.jcas.throwFeatMissing("ldcatr", "de.julielab.jules.types.ace.EntityMention"); jcasType.ll_cas.ll_setStringValue(addr, ((EntityMention_Type)jcasType).casFeatCode_ldcatr, v);...
java
public String getRole() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_role == null) jcasType.jcas.throwFeatMissing("role", "de.julielab.jules.types.ace.EntityMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((EntityMention_Type)jcasType).casFeatCode_role);}
java
public String getMetonymy_mention() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_metonymy_mention == null) jcasType.jcas.throwFeatMissing("metonymy_mention", "de.julielab.jules.types.ace.EntityMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((EntityMention_Type)jc...
java
public void setMetonymy_mention(String v) { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_metonymy_mention == null) jcasType.jcas.throwFeatMissing("metonymy_mention", "de.julielab.jules.types.ace.EntityMention"); jcasType.ll_cas.ll_setStringValue(addr, ((EntityMention_Type)jca...
java
public String getMention_type() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_mention_type == null) jcasType.jcas.throwFeatMissing("mention_type", "de.julielab.jules.types.ace.EntityMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((EntityMention_Type)jcasType).casF...
java
public void setMention_type(String v) { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_mention_type == null) jcasType.jcas.throwFeatMissing("mention_type", "de.julielab.jules.types.ace.EntityMention"); jcasType.ll_cas.ll_setStringValue(addr, ((EntityMention_Type)jcasType).casFe...
java
public String getMention_ldctype() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_mention_ldctype == null) jcasType.jcas.throwFeatMissing("mention_ldctype", "de.julielab.jules.types.ace.EntityMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((EntityMention_Type)jcasT...
java
public void setMention_ldctype(String v) { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_mention_ldctype == null) jcasType.jcas.throwFeatMissing("mention_ldctype", "de.julielab.jules.types.ace.EntityMention"); jcasType.ll_cas.ll_setStringValue(addr, ((EntityMention_Type)jcasTy...
java
public Entity getEntity_ref() { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_entity_ref == null) jcasType.jcas.throwFeatMissing("entity_ref", "de.julielab.jules.types.ace.EntityMention"); return (Entity)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((En...
java
public void setEntity_ref(Entity v) { if (EntityMention_Type.featOkTst && ((EntityMention_Type)jcasType).casFeat_entity_ref == null) jcasType.jcas.throwFeatMissing("entity_ref", "de.julielab.jules.types.ace.EntityMention"); jcasType.ll_cas.ll_setRefValue(addr, ((EntityMention_Type)jcasType).casFeatCode_en...
java
public String getSpecificType() { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_specificType == null) jcasType.jcas.throwFeatMissing("specificType", "de.julielab.jules.types.ConceptMention"); return jcasType.ll_cas.ll_getStringValue(addr, ((ConceptMention_Type)jcasType).casF...
java
public void setSpecificType(String v) { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_specificType == null) jcasType.jcas.throwFeatMissing("specificType", "de.julielab.jules.types.ConceptMention"); jcasType.ll_cas.ll_setStringValue(addr, ((ConceptMention_Type)jcasType).casFe...
java
public TOP getRef() { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_ref == null) jcasType.jcas.throwFeatMissing("ref", "de.julielab.jules.types.ConceptMention"); return (TOP)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((ConceptMention_Type)jcasType)....
java
public void setRef(TOP v) { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_ref == null) jcasType.jcas.throwFeatMissing("ref", "de.julielab.jules.types.ConceptMention"); jcasType.ll_cas.ll_setRefValue(addr, ((ConceptMention_Type)jcasType).casFeatCode_ref, jcasType.ll_cas.ll_ge...
java
public FSArray getResourceEntryList() { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_resourceEntryList == null) jcasType.jcas.throwFeatMissing("resourceEntryList", "de.julielab.jules.types.ConceptMention"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_...
java
public void setResourceEntryList(FSArray v) { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_resourceEntryList == null) jcasType.jcas.throwFeatMissing("resourceEntryList", "de.julielab.jules.types.ConceptMention"); jcasType.ll_cas.ll_setRefValue(addr, ((ConceptMention_Type)jc...
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public ResourceEntry getResourceEntryList(int i) { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_resourceEntryList == null) jcasType.jcas.throwFeatMissing("resourceEntryList", "de.julielab.jules.types.ConceptMention"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRef...
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public void setResourceEntryList(int i, ResourceEntry v) { if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_resourceEntryList == null) jcasType.jcas.throwFeatMissing("resourceEntryList", "de.julielab.jules.types.ConceptMention"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas....
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@SuppressWarnings("unchecked") public ArrayList<ArrayList<TextPiece>> getTextPiecesByPage(File pdfFile) { assert (pdfFile.exists()) : "pdfFile does not exist"; m_wordsByPage = new ArrayList<ArrayList<TextPiece>>(); PDDocument document = null; try { document = PDDo...
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@Override public String stem(String token) { if (token != null && token.length() > 3 && token.endsWith("s")) { return token.substring(0, token.length() - 1); } return token; }
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private static File materializeDescriptor(ResourceSpecifier resource) throws IOException, SAXException { File tempDesc = File.createTempFile("desc", ".xml"); // tempDesc.deleteOnExit(); BufferedWriter out = new BufferedWriter(new OutputStreamWriter( new FileOutputStr...
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public String getCat() { if (CoordinationElement_Type.featOkTst && ((CoordinationElement_Type)jcasType).casFeat_cat == null) jcasType.jcas.throwFeatMissing("cat", "de.julielab.jules.types.CoordinationElement"); return jcasType.ll_cas.ll_getStringValue(addr, ((CoordinationElement_Type)jcasType).casFeatCode...
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public void setCat(String v) { if (CoordinationElement_Type.featOkTst && ((CoordinationElement_Type)jcasType).casFeat_cat == null) jcasType.jcas.throwFeatMissing("cat", "de.julielab.jules.types.CoordinationElement"); jcasType.ll_cas.ll_setStringValue(addr, ((CoordinationElement_Type)jcasType).casFeatCode_...
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public Set<String> getSynonyms(final String canonical) { Set<String> syn = Sets.newHashSet(); for (Map<String, Concept> lexica : lexicon) { for (String lexCanonical : lexica.keySet()) { Set<String> variants = lexica.get(lexCanonical).getVariants(); for (Strin...
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public int codePointConversion(String fontName, int codePoint) { NonStandardFontFamily nonStandardFontFamily = get(fontName); if (nonStandardFontFamily == null) return codePoint; CodePointSet codePointSet = nonStandardFontFamily.getCodePointSet(); if (codePointSet == null) ...
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public String getPerson() { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_person == null) jcasType.jcas.throwFeatMissing("person", "de.julielab.jules.types.VerbFeats"); return jcasType.ll_cas.ll_getStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_person);}
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public void setPerson(String v) { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_person == null) jcasType.jcas.throwFeatMissing("person", "de.julielab.jules.types.VerbFeats"); jcasType.ll_cas.ll_setStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_person, v);}
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public String getVoice() { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_voice == null) jcasType.jcas.throwFeatMissing("voice", "de.julielab.jules.types.VerbFeats"); return jcasType.ll_cas.ll_getStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_voice);}
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public void setVoice(String v) { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_voice == null) jcasType.jcas.throwFeatMissing("voice", "de.julielab.jules.types.VerbFeats"); jcasType.ll_cas.ll_setStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_voice, v);}
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public String getAspect() { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_aspect == null) jcasType.jcas.throwFeatMissing("aspect", "de.julielab.jules.types.VerbFeats"); return jcasType.ll_cas.ll_getStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_aspect);}
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public void setAspect(String v) { if (VerbFeats_Type.featOkTst && ((VerbFeats_Type)jcasType).casFeat_aspect == null) jcasType.jcas.throwFeatMissing("aspect", "de.julielab.jules.types.VerbFeats"); jcasType.ll_cas.ll_setStringValue(addr, ((VerbFeats_Type)jcasType).casFeatCode_aspect, v);}
java
public FSArray getFullTextLinks() { if (FullTextLinkList_Type.featOkTst && ((FullTextLinkList_Type)jcasType).casFeat_fullTextLinks == null) jcasType.jcas.throwFeatMissing("fullTextLinks", "de.julielab.jules.types.FullTextLinkList"); return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRef...
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public void setFullTextLinks(FSArray v) { if (FullTextLinkList_Type.featOkTst && ((FullTextLinkList_Type)jcasType).casFeat_fullTextLinks == null) jcasType.jcas.throwFeatMissing("fullTextLinks", "de.julielab.jules.types.FullTextLinkList"); jcasType.ll_cas.ll_setRefValue(addr, ((FullTextLinkList_Type)jcasTy...
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public FullTextLink getFullTextLinks(int i) { if (FullTextLinkList_Type.featOkTst && ((FullTextLinkList_Type)jcasType).casFeat_fullTextLinks == null) jcasType.jcas.throwFeatMissing("fullTextLinks", "de.julielab.jules.types.FullTextLinkList"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(a...
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public void setFullTextLinks(int i, FullTextLink v) { if (FullTextLinkList_Type.featOkTst && ((FullTextLinkList_Type)jcasType).casFeat_fullTextLinks == null) jcasType.jcas.throwFeatMissing("fullTextLinks", "de.julielab.jules.types.FullTextLinkList"); jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getR...
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public void read(File f) throws IOException { FileInputStream fis = new FileInputStream(f); try { read(new BufferedReader(new InputStreamReader(fis, "UTF-8"))); } finally { IOUtils.closeQuietly(fis); } }
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public void addTerm(OntologyTerm term) { terms.put(term.getId(), term); indexTerm(term); isTypeOfIsBuilt = false; }
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public void addOntology(OBOOntology ont) { for (String id : ont.terms.keySet()) { addTerm(ont.terms.get(id)); } }
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public void writeOntTxt(PrintWriter pw) { for (String id : terms.keySet()) { OntologyTerm term = terms.get(id); Set<String> synSet = new HashSet<String>(); synSet.add(term.getName()); for (Synonym s : term.getSynonyms()) { String st = s.getType(); ...
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public Set<String> getIdsForIdsWithAncestors(Collection<String> termIds) { Stack<String> idsToConsider = new Stack<String>(); idsToConsider.addAll(termIds); Set<String> resultIds = new HashSet<String>(); while (!idsToConsider.isEmpty()) { String id = idsToConsider.pop(); ...
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