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| name: "OpenH-RF — Mosaic Intelligence / NuevoSono IVUS" | |
| license: cc-by-4.0 | |
| task_categories: | |
| - image-segmentation | |
| tags: | |
| - ultrasound | |
| - rf | |
| - openh-rf | |
| - IVUS | |
| - tracked-ultrasound | |
| # Data Card — Mosaic Intelligence / NuevoSono in-vivo IVUS | |
| This data card consists of a collection of in-vivo intravascular ultrasound (IVUS) acquisitions from a porcine study. Each acquisition is saved in the *zea* file format. The general dataset sections below (contributors, license, characterization, etc.) apply to all acquisitions, with individual subsections detailing each dataset's specific dimensions and which optional groups are present. | |
| There are 9 acquisitions in total: | |
| **Group 1: `15_*` acquisitions (untracked, counterclockwise rotation):** | |
| - `15_10_18_21` | |
| - `15_10_50_19` | |
| - `15_16_45_06` | |
| **Group 2: `22_*` acquisitions (tracked, linear encoder pullback, clockwise rotation):** | |
| - `22_12_10_52` | |
| - `22_12_29_46` | |
| - `22_12_38_45` | |
| - `22_13_10_16` | |
| - `22_13_56_43` | |
| - `22_14_29_54` | |
| ## Dataset Description | |
| Each dataset is an IVUS acquisition collected in a porcine animal study. The source data consists of raw IVUS RF frames and a pre-computed (scan-converted) B-mode image. Six of the acquisitions have time-sampled linear encoder pullback positions of the IVUS probe at each frame. For each acquisition and for every frame, per-class segmentation masks are provided for the vessel lumen, intima-media, and guidewire. | |
| ## Dataset Contributors | |
| Mosaic Intelligence Labs in collaboration with NuevoSono | |
| Primary points of contact: | |
| Brian Boitnott (1): brian@mosaicintelligence.xyz | |
| Ali Mackanic (1): ali@mosaicintelligence.xyz | |
| ## Dataset Creation Date | |
| 07/17/2026 | |
| ## License / Terms of Use | |
| All contributed data, labels, and metadata is released by Mosaic Intelligence Labs | |
| and NuevoSono under CC BY 4.0. | |
| Pre-existing hardware, software, simulation, and platform intellectual property | |
| remain the property of their respective owners. The team agrees to comply with | |
| OpenH-RF governance, publication, and data-sharing policies. The license is also | |
| recorded in each file's `metadata/credit` field. | |
| ## Intended Usage | |
| Intended for IVUS tracking and segmentation applications, including lesion | |
| detection and image-guided intervention. | |
| ## Dataset Characterization | |
| - **Data Collection Method:** Porcine (in-vivo animal study) | |
| - **Labeling Method:** derived tracking metadata, semi-automated labeling | |
| - **Acquisition System:** Single-element IVUS, center frequency 30 MHz, | |
| sampling rate 1 GHz | |
| ## Dataset Format | |
| All acquisitions are submitted in the *zea* file format. The RF data is stored as | |
| a rotational sequence of A-lines (`n_tx` transmits per frame, one element/channel); | |
| the accompanying B-mode `image` and `segmentation` masks are pre-computed, | |
| scan-converted Cartesian frames sharing a per-pixel coordinate grid. | |
| ### Shared per-sample schema | |
| Fields that are in every acquisition: | |
| | Group / field | Shape | Dtype | Units | Description | | |
| |---|---|---|---|---| | |
| | `data/raw_data` | `[n_frames, n_tx, n_ax, 1, 1]` | float32 | source RF units | Raw IVUS RF frames (single element / channel) | | |
| | `data/image/values` | `[n_frames, H, W]` | uint8 | — | Pre-computed (scan-converted) B-mode image | | |
| | `data/image/coordinates` | `[H, W, 3]` | float32 | m | Per-pixel Cartesian positions `(x, y, z)`; cross-section lies in the x-y plane, `z = 0` | | |
| | `data/segmentation/values` | `[n_frames, H, W, n_labels]` | bool | — | Per-class boolean segmentation masks (one channel per label) | | |
| | `data/segmentation/coordinates` | `[H, W, 3]` | float32 | m | Same per-pixel grid as `image/coordinates` | | |
| | `data/segmentation/labels` | `[n_labels]` | str | — | Channel names: `background`, `lumen`, `intima_media`, `guidewire` | | |
| | `scan/*` | — | mixed | Hz / s / rad / m | Scan metadata (`sampling_frequency`, `center_frequency`, `demodulation_frequency`, `polar_angles`, `t0_delays`, `tx_apodizations`, `focus_distances`, `transmit_origins`, `initial_times`) | | |
| | `probe/name` | scalar | str | — | Probe name (`NuevoSono IVUS`) | | |
| | `probe/type` | scalar | str | — | Probe geometry type (`custom`) | | |
| | `probe/probe_geometry` | `[1, 3]` | float32 | m | Element position (single element at the origin) | | |
| | `probe/probe_center_frequency` | scalar | float32 | Hz | Nominal center frequency (30 MHz) | | |
| | `metadata/subject/{id, type}` | scalar | str | — | Subject identifier (`porcine_<acq>`) and type (`animal`) | | |
| | `metadata/credit` | scalar | str | — | Attribution: `Mosaic Intelligence - NuevoSono IVUS porcine dataset (CC BY 4.0)` | | |
| | `metadata/text_report` | scalar | str | — | transducer rotation direction | | |
| | `metadata/rotation/{samples, sampling_frequency, start_time_offset}` | `[1]` / scalar / scalar | float32 | — / Hz / s | Transducer rotation: `samples = +1` clockwise, `-1` counterclockwise | | |
| | `metadata/pullback_position/{samples, sampling_frequency, start_time_offset}` | `[n_frames]` / scalar / scalar | float32 | m / Hz / s | Linear encoder pullback position per frame (**tracked acquisitions only**) | | |
| ## Per-dataset details | |
| One data card per contributed sub-dataset. All fields follow the shared schema above. `n_ax = 8192`, `n_el = 1`, and `n_labels = 4` (`background`, `lumen`, | |
| `intima_media`, `guidewire`) for every acquisition. | |
| ### `15_10_18_21` (untracked, counterclockwise) | |
| - Dimensions: `n_frames = 100`, `n_tx = 540`, `H = 985`, `W = 986` | |
| - Frame rate: ~3.33 Hz | |
| - Rotation: `metadata/rotation/samples = -1` (counterclockwise); `metadata/text_report = "Transducer rotation direction: counterclockwise."` | |
| - Tracking: **none** — no `metadata/pullback_position` group (source has no `frameAttributes.txt`) | |
| - **Stored HDF5 size:** 1.46 GB (1,456,209,920 bytes). | |
| - Note: the image/mask grid is non-square (`985 x 986`) | |
|  | |
| ### `15_10_50_19` (untracked, counterclockwise) | |
| - Dimensions: `n_frames = 60`, `n_tx = 360`, `H = 985`, `W = 986` | |
| - Frame rate: ~3.33 Hz | |
| - Rotation: `metadata/rotation/samples = -1` (counterclockwise) | |
| - Tracking: **none** — no `metadata/pullback_position` group | |
| - **Stored HDF5 size:** 592.12 MB (592,117,760 bytes). | |
| - Note: the image/mask grid is non-square (`985 x 986`) | |
|  | |
| ### `15_16_45_06` (untracked, counterclockwise) | |
| - Dimensions: `n_frames = 100`, `n_tx = 540`, `H = 985`, `W = 986` | |
| - Frame rate: ~3.33 Hz | |
| - Rotation: `metadata/rotation/samples = -1` (counterclockwise) | |
| - Tracking: **none** — no `metadata/pullback_position` group | |
| - **Stored HDF5 size:** 1.46 GB (1,456,275,456 bytes). | |
| - Note: the image/mask grid is non-square (`985 x 986`) | |
|  | |
| ### `22_12_10_52` (tracked, clockwise) | |
| - Dimensions: `n_frames = 150`, `n_tx = 540`, `H = W = 2048` | |
| - Frame rate: ~3.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise) | |
| - Tracking: includes `metadata/pullback_position` `[150]` (linear encoder position per frame) | |
| - **Stored HDF5 size:** 2.36 GB (2,356,936,704 bytes). | |
|  | |
| ### `22_12_29_46` (tracked, clockwise) | |
| - Dimensions: `n_frames = 100`, `n_tx = 540`, `H = W = 2048` | |
| - Frame rate: ~8.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise) | |
| - Tracking: includes `metadata/pullback_position` `[100]` | |
| - **Stored HDF5 size:** 1.60 GB (1,602,945,024 bytes). | |
|  | |
| ### `22_12_38_45` (tracked, clockwise) | |
| - Dimensions: `n_frames = 150`, `n_tx = 360`, `H = W = 2048` | |
| - Frame rate: ~8.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise) | |
| - Tracking: includes `metadata/pullback_position` `[150]` | |
| - **Stored HDF5 size:** 1.58 GB (1,576,337,408 bytes). | |
|  | |
| ### `22_13_10_16` (tracked, clockwise) | |
| - Dimensions: `n_frames = 100`, `n_tx = 540`, `H = W = 2048` | |
| - Frame rate: ~8.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise) | |
| - Tracking: includes `metadata/pullback_position` `[100]` | |
| - **Stored HDF5 size:** 1.54 GB (1,535,311,872 bytes). | |
|  | |
| ### `22_13_56_43` (tracked, clockwise) | |
| - Dimensions: `n_frames = 100`, `n_tx = 540`, `H = W = 2048` | |
| - Frame rate: ~8.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise) | |
| - Tracking: includes `metadata/pullback_position` `[100]` | |
| - **Stored HDF5 size:** 1.53 GB (1,527,119,872 bytes). | |
|  | |
| ### `22_14_29_54` (tracked, clockwise) | |
| - Dimensions: `n_frames = 150`, `n_tx = 360`, `H = W = 2048` | |
| - Frame rate: ~3.33 Hz | |
| - Rotation: `metadata/rotation/samples = +1` (clockwise); `metadata/text_report = "Transducer rotation direction: clockwise."` | |
| - Tracking: includes `metadata/pullback_position` `[150]` | |
| - **Stored HDF5 size:** 1.65 GB (1,653,080,064 bytes). | |
|  | |
| ## Dataset Quantification | |
| **Current OpenH-RF release:** 9 HDF5 files; 13.76 GB (13,756,334,080 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes. | |
| - Acquisitions: 9 (3 untracked `15_*`, 6 tracked `22_*`) | |
| - Frames per acquisition: 60–150 (1010 frames total across all acquisitions) | |
| - Frame rate: ~3.33 Hz or ~8.33 Hz depending on acquisition (see per-dataset table) | |
| - Train / validation / test split: N/A | |
| - **Stored HDF5 size:** 13.76 GB (13,756,334,080 bytes). | |
| | Acquisition | Frames | `n_tx` | `H x W` | Frame rate | Rotation | Tracking | Size | | |
| |---|---|---|---|---|---|---|---| | |
| | `15_10_18_21` | 100 | 540 | 985 x 986 | ~3.33 Hz | counterclockwise | untracked | 1.46 GB | | |
| | `15_10_50_19` | 60 | 360 | 985 x 986 | ~3.33 Hz | counterclockwise | untracked | 592.12 MB | | |
| | `15_16_45_06` | 100 | 540 | 985 x 986 | ~3.33 Hz | counterclockwise | untracked | 1.46 GB | | |
| | `22_12_10_52` | 150 | 540 | 2048 x 2048 | ~3.33 Hz | clockwise | tracked | 2.36 GB | | |
| | `22_12_29_46` | 100 | 540 | 2048 x 2048 | ~8.33 Hz | clockwise | tracked | 1.60 GB | | |
| | `22_12_38_45` | 150 | 360 | 2048 x 2048 | ~8.33 Hz | clockwise | tracked | 1.58 GB | | |
| | `22_13_10_16` | 100 | 540 | 2048 x 2048 | ~8.33 Hz | clockwise | tracked | 1.54 GB | | |
| | `22_13_56_43` | 100 | 540 | 2048 x 2048 | ~8.33 Hz | clockwise | tracked | 1.53 GB | | |
| | `22_14_29_54` | 150 | 360 | 2048 x 2048 | ~3.33 Hz | clockwise | tracked | 1.65 GB | | |
| ## Subject Metadata | |
| Animal study data — no human subjects. | |
| ## Data Validation | |
| A `zea.Pipeline` reconstructs the IVUS B-mode from the raw channel data | |
| (RF → envelope → normalization → log compression → scan conversion). See | |
| [reconstruct.py](../reconstruct.py) and [pipeline.yaml](../pipeline.yaml). Linear encoder position (when applicable) and segmentation masks are overlayed on the B-modes. | |
| ## Known Issues | |
| - Untracked (`15_*`) acquisitions have no `pullback_position`, so the pullback | |
| trajectory panel is omitted during reconstruction. | |
| ## Ethical Considerations | |
| Porcine animal study data only; contains no human subjects or PHI. Collected and | |
| released in compliance with applicable institutional animal care approvals and | |
| OpenH-RF governance and data-sharing policies. | |