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Rename OpenH-RF to Open-H-RF

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Files changed (48) hide show
  1. README.md +10 -10
  2. assets/badge-github.svg +1 -1
  3. assets/badge-website.svg +1 -1
  4. colorado-boulder/README.md +5 -5
  5. concordia/README.md +7 -7
  6. dartmouth-uct/README.md +4 -4
  7. kaist-snubh-barreleye/README.md +8 -8
  8. mosaic-nuevosono/README.md +4 -4
  9. nv-raw2insights-us/README.md +5 -5
  10. oslo/A_cardiac/README.md +7 -7
  11. oslo/B_carotid/README.md +7 -7
  12. oslo/C_verasonics_phantom/README.md +7 -7
  13. oslo/D_alpinion_phantom/README.md +7 -7
  14. oslo/E_simulation/README.md +7 -7
  15. oslo/F_motion/README.md +7 -7
  16. oslo/README.md +5 -5
  17. politorino/README.md +4 -4
  18. resolvestroke/README.md +5 -5
  19. resolvestroke/clinical/README.md +28 -28
  20. resolvestroke/phantom_flow/README.md +7 -7
  21. resolvestroke/phantom_mp/README.md +5 -5
  22. resolvestroke/saddle/README.md +7 -7
  23. siemens-healthineers/README.md +6 -6
  24. stanford-murine/README.md +7 -7
  25. strasbourg-basel/README.md +7 -7
  26. technion/bladder/README.md +7 -7
  27. technion/cardiac/README.md +7 -7
  28. technion/phantom/README.md +7 -7
  29. tel-aviv/README.md +4 -4
  30. tue-aaa/README.md +6 -6
  31. tue-cardiac/README.md +6 -6
  32. tue-carotid/README.md +6 -6
  33. tumunich/README.md +5 -5
  34. twente-microbubblesim/README.md +5 -5
  35. twente-vortexflow/README.md +4 -4
  36. ubc/module_A/README.md +6 -6
  37. ubc/module_C/README.md +6 -6
  38. unc-liver/README.md +4 -4
  39. unc-openpros/README.md +5 -5
  40. us4us/README.md +4 -4
  41. vanderbilt/README.md +6 -6
  42. waterloo-carotid/README.md +6 -6
  43. waterloo-femoralvein/README.md +6 -6
  44. waterloo-muscle/README.md +6 -6
  45. weillcornell/README.md +6 -6
  46. weizmann-sampl/README.md +3 -3
  47. wpi/README.md +4 -4
  48. wpi/pipeline.yaml +1 -1
README.md CHANGED
@@ -4,27 +4,27 @@ viewer: false
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  ---
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  <h1 align="center" style="font-size: 2.5em; font-weight: 800; letter-spacing: -0.035em; line-height: 1.05; margin-bottom: 0.3em;">
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- <img src="assets/logo-glow-transparent.svg" alt="" height="100" style="display: inline; height: 1.5em; margin: 0; vertical-align: -0.3em;"> OpenH-RF
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  </h1>
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  <p align="center"><em>The largest, openly licensed dataset of medical ultrasound channel capture data</em></p>
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- ![Collage of reconstructed images and raw channel data from the OpenH-RF subsets](assets/collage.webp)
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  <p align="center">
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- <a href="https://open-h.github.io/OpenH-RF/"><img src="assets/badge-website.svg" alt="Website" style="display: inline; margin: 0 3px;"></a>
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- <a href="https://github.com/open-h/OpenH-RF"><img src="assets/badge-github.svg" alt="GitHub" style="display: inline; margin: 0 3px;"></a>
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  <a href="https://arxiv.org/abs/2610.13616"><img src="assets/badge-arxiv.svg" alt="arXiv" style="display: inline; margin: 0 3px;"></a>
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  <a href="https://creativecommons.org/licenses/by/4.0/"><img src="assets/badge-license.svg" alt="License: CC BY 4.0" style="display: inline; margin: 0 3px;"></a>
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  </p>
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  ## Dataset Description
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- OpenH-RF is a community-driven dataset initiative building the open, shared foundation needed to train and evaluate AI models built on pre-beamformed (channel capture) medical ultrasound measurements.
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25
- This dataset is a collection of RF samples and metadata in the [`zea` file format](https://github.com/tue-bmd/zea) from a variety of tasks and applications, including ultrasound localization microscopy, ultrasound computer tomography, b-mode, flow imaging and more. The dataset catalog and gallery is available at [open-h.github.io/OpenH-RF](https://open-h.github.io/OpenH-RF).
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27
- Each subdirectory here holds a data card and a processing pipeline. The matching reconstruction scripts, one runnable reference reconstruction per subset, are in the companion repository, [github.com/open-h/OpenH-RF](https://github.com/open-h/OpenH-RF).
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  This dataset is ready for commercial or non-commercial uses.
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@@ -38,7 +38,7 @@ NVIDIA, Stanford University, Eindhoven University of Technology, Tel Aviv Univer
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  ## Dataset Stewardship
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41
- OpenH-RF community & Steering Group
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  ## Dataset Creation Date
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@@ -80,7 +80,7 @@ Channel capture data and related meta data are saved in HDF5 data files using a
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  ## Reference(s)
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83
- - https://github.com/open-h/OpenH-RF
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  - https://arxiv.org/abs/2610.13616
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86
  ## Ethical Considerations
@@ -91,4 +91,4 @@ Please report quality, risk, security vulnerabilities or NVIDIA AI Concerns [her
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92
  ## Citation
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94
- If you use OpenH-RF in your research, please cite the [OpenH-RF paper](https://arxiv.org/abs/2610.13616). The BibTeX entry is in the [GitHub repository](https://github.com/open-h/OpenH-RF#citation).
 
4
  ---
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  <h1 align="center" style="font-size: 2.5em; font-weight: 800; letter-spacing: -0.035em; line-height: 1.05; margin-bottom: 0.3em;">
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+ <img src="assets/logo-glow-transparent.svg" alt="" height="100" style="display: inline; height: 1.5em; margin: 0; vertical-align: -0.3em;"> Open-H-RF
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  </h1>
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  <p align="center"><em>The largest, openly licensed dataset of medical ultrasound channel capture data</em></p>
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12
+ ![Collage of reconstructed images and raw channel data from the Open-H-RF subsets](assets/collage.webp)
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14
  <p align="center">
15
+ <a href="https://open-h.github.io/Open-H-RF/"><img src="assets/badge-website.svg" alt="Website" style="display: inline; margin: 0 3px;"></a>
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+ <a href="https://github.com/open-h/Open-H-RF"><img src="assets/badge-github.svg" alt="GitHub" style="display: inline; margin: 0 3px;"></a>
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  <a href="https://arxiv.org/abs/2610.13616"><img src="assets/badge-arxiv.svg" alt="arXiv" style="display: inline; margin: 0 3px;"></a>
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  <a href="https://creativecommons.org/licenses/by/4.0/"><img src="assets/badge-license.svg" alt="License: CC BY 4.0" style="display: inline; margin: 0 3px;"></a>
19
  </p>
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21
  ## Dataset Description
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23
+ Open-H-RF is a community-driven dataset initiative building the open, shared foundation needed to train and evaluate AI models built on pre-beamformed (channel capture) medical ultrasound measurements.
24
 
25
+ This dataset is a collection of RF samples and metadata in the [`zea` file format](https://github.com/tue-bmd/zea) from a variety of tasks and applications, including ultrasound localization microscopy, ultrasound computer tomography, b-mode, flow imaging and more. The dataset catalog and gallery is available at [open-h.github.io/Open-H-RF](https://open-h.github.io/Open-H-RF).
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27
+ Each subdirectory here holds a data card and a processing pipeline. The matching reconstruction scripts, one runnable reference reconstruction per subset, are in the companion repository, [github.com/open-h/Open-H-RF](https://github.com/open-h/Open-H-RF).
28
 
29
  This dataset is ready for commercial or non-commercial uses.
30
 
 
38
 
39
  ## Dataset Stewardship
40
 
41
+ Open-H-RF community & Steering Group
42
 
43
  ## Dataset Creation Date
44
 
 
80
 
81
  ## Reference(s)
82
 
83
+ - https://github.com/open-h/Open-H-RF
84
  - https://arxiv.org/abs/2610.13616
85
 
86
  ## Ethical Considerations
 
91
 
92
  ## Citation
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94
+ If you use Open-H-RF in your research, please cite the [Open-H-RF paper](https://arxiv.org/abs/2610.13616). The BibTeX entry is in the [GitHub repository](https://github.com/open-h/Open-H-RF#citation).
assets/badge-github.svg CHANGED
assets/badge-website.svg CHANGED
colorado-boulder/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
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  tags:
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  - ultrasound
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  - rf
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- - openh-rf
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  - 3d
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  language:
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  - en
@@ -20,7 +20,7 @@ size_categories:
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  | 2D ATS 539 phantom | 3D phantom | In-vivo quadriceps |
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  |:---:|:---:|:---:|
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  | ![Tracked SSA sweep through the 2D ATS 539 phantom](assets/ssa-sweep-phantom2d.gif) | ![Tracked SSA sweep through the 3D phantom](assets/ssa-sweep-phantom3d.gif) | ![Tracked SSA sweep along in-vivo quadriceps muscle](assets/ssa-sweep-invivo.gif) |
23
- | [`Sub-dataset-1`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/colorado-boulder/Sub-dataset-1) | [`Sub-dataset-2`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/colorado-boulder/Sub-dataset-2) | [`Sub-dataset-3`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/colorado-boulder/Sub-dataset-3) |
24
 
25
  *Motion-compensated tracked SSA reconstructions, one per sub-dataset. Each frame beamforms the raw RF channel data with its own tracked probe pose; a 40 mm window of frames is then coherently summed to synthesise a larger effective aperture, and the window slides along the freehand sweep.*
26
 
@@ -30,7 +30,7 @@ This dataset contains tracked swept synthetic aperture (SSA) ultrasound acquisit
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31
  The data were acquired using a Verasonics Vantage research ultrasound system with a P4-2 phased array transducer. The dataset includes raw RF channel data, acquisition parameters, probe geometry, transmit information, and frame-wise tracked probe pose metadata.
32
 
33
- The purpose of this dataset is to provide reproducible examples for generalized ultrasound reconstruction, with a particular focus on motion-compensated tracked SSA reconstruction using the zea/OpenH-RF data format.
34
 
35
  The phantom acquisitions do not contain human subject data, animal data, or protected health information (PHI). The in-vivo acquisitions were collected from healthy volunteer participants and de-identified prior to release.
36
 
@@ -88,7 +88,7 @@ None (N/A).
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89
  ## Processing the Dataset
90
 
91
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/colorado-boulder/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
92
 
93
  The script selects tracked frames at roughly 1 mm lateral spacing and writes the reconstruction to `ssa_bmode.png`. Point `ZEA_FILE` at any acquisition in the corpus to reconstruct it. [`assets/main_bmode.png`](./assets/main_bmode.png) was produced this way, compounding the full sweep into one image; the loops at the top of this card slide a shorter aperture window along the sweep instead.
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@@ -98,7 +98,7 @@ The script selects tracked frames at roughly 1 mm lateral spacing and writes the
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99
  [zea v0.1.7](https://github.com/tue-bmd/zea)
100
 
101
- The dataset is distributed in the zea/OpenH-RF HDF5 format.
102
 
103
  Each file includes:
104
 
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - 3d
12
  language:
13
  - en
 
20
  | 2D ATS 539 phantom | 3D phantom | In-vivo quadriceps |
21
  |:---:|:---:|:---:|
22
  | ![Tracked SSA sweep through the 2D ATS 539 phantom](assets/ssa-sweep-phantom2d.gif) | ![Tracked SSA sweep through the 3D phantom](assets/ssa-sweep-phantom3d.gif) | ![Tracked SSA sweep along in-vivo quadriceps muscle](assets/ssa-sweep-invivo.gif) |
23
+ | [`Sub-dataset-1`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/colorado-boulder/Sub-dataset-1) | [`Sub-dataset-2`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/colorado-boulder/Sub-dataset-2) | [`Sub-dataset-3`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/colorado-boulder/Sub-dataset-3) |
24
 
25
  *Motion-compensated tracked SSA reconstructions, one per sub-dataset. Each frame beamforms the raw RF channel data with its own tracked probe pose; a 40 mm window of frames is then coherently summed to synthesise a larger effective aperture, and the window slides along the freehand sweep.*
26
 
 
30
 
31
  The data were acquired using a Verasonics Vantage research ultrasound system with a P4-2 phased array transducer. The dataset includes raw RF channel data, acquisition parameters, probe geometry, transmit information, and frame-wise tracked probe pose metadata.
32
 
33
+ The purpose of this dataset is to provide reproducible examples for generalized ultrasound reconstruction, with a particular focus on motion-compensated tracked SSA reconstruction using the zea/Open-H-RF data format.
34
 
35
  The phantom acquisitions do not contain human subject data, animal data, or protected health information (PHI). The in-vivo acquisitions were collected from healthy volunteer participants and de-identified prior to release.
36
 
 
88
 
89
  ## Processing the Dataset
90
 
91
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/colorado-boulder/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
92
 
93
  The script selects tracked frames at roughly 1 mm lateral spacing and writes the reconstruction to `ssa_bmode.png`. Point `ZEA_FILE` at any acquisition in the corpus to reconstruct it. [`assets/main_bmode.png`](./assets/main_bmode.png) was produced this way, compounding the full sweep into one image; the loops at the top of this card slide a shorter aperture window along the sweep instead.
94
 
 
98
 
99
  [zea v0.1.7](https://github.com/tue-bmd/zea)
100
 
101
+ The dataset is distributed in the zea/Open-H-RF HDF5 format.
102
 
103
  Each file includes:
104
 
concordia/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
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  tags:
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  - ultrasound
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  - rf
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- - openh-rf
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  - synthetic
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  - field-ii
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  language:
@@ -21,11 +21,11 @@ size_categories:
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22
  ![B-mode reconstructions of the five SynthUS-FSA phantom classes](assets/classes.png)
23
 
24
- *The five phantom classes (anechoic, hypoechoic, hyperechoic, diverse, point-target), one capture per column: [`image_0012`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/concordia/data/image_0012.hdf5), [`image_0410`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/concordia/data/image_0410.hdf5), [`image_0733`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/concordia/data/image_0733.hdf5), [`image_0753`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/concordia/data/image_0753.hdf5), [`image_1808`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/concordia/data/image_1808.hdf5). Rows show the reference B-mode (`data/image`), the simulated scatterer cloud (`data/scatterers`) and the label map (`data/segmentation` for the lesion classes, `data/diverse_source_image` for diverse; point-target captures store none).*
25
 
26
  ## Dataset Description
27
 
28
- SynthUS-FSA is a fully synthetic corpus of pre-beamformed full-synthetic-aperture (FSA) ultrasound channel-data captures, generated with the Field II simulator to model a 128-element L11-5v linear array. Each capture fires one transmit event per element (128 transmits, receive on all 128 elements), so every element-to-element combination is retained and any receive/transmit beamforming scheme (focused B-mode, multi-angle plane-wave compounding, diverging-wave, adaptive/compressive schemes) can be retrospectively synthesized from the same channel data. The dataset is packaged in [zea](https://zea.readthedocs.io) format — the OpenH-RF reference Python library for ultrasound file I/O and beamforming — which every `.hdf5` file and `reconstruct.py` depend on. The dataset targets three OpenH-RF task categories: (1) generalized reconstruction (FSA channel data paired with a synthesized full synthetic-aperture B-mode as ground truth), (2) compressed sensing / adaptive transmit (retrospective sub-selection of the 128 transmit events — derived from the same captures, no additional files), and (3) segmentation (binary echogenicity masks on a subset of phantoms). All data is simulated — no clinical, phantom-hardware, or animal acquisition is involved.
29
 
30
  A similar data-generation approach was used in Sharifzadeh et al. (2024). Users of this dataset are kindly requested to cite that work:
31
 
@@ -82,13 +82,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
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83
  ```bash
84
  zea process \
85
- --dataset hf://nvidia/OpenH-RF/concordia/data/image_0005.hdf5 \
86
- --config hf://nvidia/OpenH-RF/concordia/pipeline.yaml \
87
  --n-frames 1 \
88
  --save-as png
89
  ```
90
 
91
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/concordia/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
92
 
93
  ## Dataset Format
94
 
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108
  ## Dataset Quantification
109
 
110
- **Current OpenH-RF release:** 2,000 HDF5 files; 82.39 GB (82,390,286,336 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
111
 
112
  This dataset comprises 2,000 FSA captures across five echogenicity classes:
113
 
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - synthetic
13
  - field-ii
14
  language:
 
21
 
22
  ![B-mode reconstructions of the five SynthUS-FSA phantom classes](assets/classes.png)
23
 
24
+ *The five phantom classes (anechoic, hypoechoic, hyperechoic, diverse, point-target), one capture per column: [`image_0012`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/concordia/data/image_0012.hdf5), [`image_0410`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/concordia/data/image_0410.hdf5), [`image_0733`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/concordia/data/image_0733.hdf5), [`image_0753`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/concordia/data/image_0753.hdf5), [`image_1808`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/concordia/data/image_1808.hdf5). Rows show the reference B-mode (`data/image`), the simulated scatterer cloud (`data/scatterers`) and the label map (`data/segmentation` for the lesion classes, `data/diverse_source_image` for diverse; point-target captures store none).*
25
 
26
  ## Dataset Description
27
 
28
+ SynthUS-FSA is a fully synthetic corpus of pre-beamformed full-synthetic-aperture (FSA) ultrasound channel-data captures, generated with the Field II simulator to model a 128-element L11-5v linear array. Each capture fires one transmit event per element (128 transmits, receive on all 128 elements), so every element-to-element combination is retained and any receive/transmit beamforming scheme (focused B-mode, multi-angle plane-wave compounding, diverging-wave, adaptive/compressive schemes) can be retrospectively synthesized from the same channel data. The dataset is packaged in [zea](https://zea.readthedocs.io) format — the Open-H-RF reference Python library for ultrasound file I/O and beamforming — which every `.hdf5` file and `reconstruct.py` depend on. The dataset targets three Open-H-RF task categories: (1) generalized reconstruction (FSA channel data paired with a synthesized full synthetic-aperture B-mode as ground truth), (2) compressed sensing / adaptive transmit (retrospective sub-selection of the 128 transmit events — derived from the same captures, no additional files), and (3) segmentation (binary echogenicity masks on a subset of phantoms). All data is simulated — no clinical, phantom-hardware, or animal acquisition is involved.
29
 
30
  A similar data-generation approach was used in Sharifzadeh et al. (2024). Users of this dataset are kindly requested to cite that work:
31
 
 
82
 
83
  ```bash
84
  zea process \
85
+ --dataset hf://nvidia/Open-H-RF/concordia/data/image_0005.hdf5 \
86
+ --config hf://nvidia/Open-H-RF/concordia/pipeline.yaml \
87
  --n-frames 1 \
88
  --save-as png
89
  ```
90
 
91
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/concordia/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
92
 
93
  ## Dataset Format
94
 
 
107
 
108
  ## Dataset Quantification
109
 
110
+ **Current Open-H-RF release:** 2,000 HDF5 files; 82.39 GB (82,390,286,336 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
111
 
112
  This dataset comprises 2,000 FSA captures across five echogenicity classes:
113
 
dartmouth-uct/README.md CHANGED
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  tags:
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  - ultrasound
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  - rf
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  - usct
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  - sound-speed-estimation
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  - attenuation
@@ -23,7 +23,7 @@ size_categories:
23
 
24
  ![Ring-array USCT reflectivity reconstruction of a digital breast phantom, next to its ground-truth sound-speed and attenuation maps](assets/phantom_179604449_z200.png)
25
 
26
- *A 2D-sim breast cross-section, [`data/2d/phantom_179604449_z200.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/dartmouth-uct/data/2d/phantom_179604449_z200.hdf5), reconstructed as a reflectivity image beside the ground-truth sound-speed and attenuation maps stored in the file.*
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28
  ## Dataset Description
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@@ -96,7 +96,7 @@ Both collections are generated from the **same underlying digital breast phantom
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97
  ## Processing the Dataset
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99
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/dartmouth-uct/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
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101
  Set `ZEA_FILE` at the top of the script and run `python reconstruct.py`; the figure at the top of this card is its output. `SOS_MAP = True` swaps the constant-sound-speed delays for a straight-ray integral through the ground-truth map.
102
 
@@ -115,7 +115,7 @@ All data are packaged in the **`zea` HDF5 file format** (one `.hdf5` file per ac
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116
  ## Dataset Quantification
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118
- **Current OpenH-RF release:** 2,625 HDF5 files; 257.62 GB (257,619,787,776 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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120
  - **Number of acquisitions:** **2,149 (2D-sim)** (1,859 dense + 290 fatty) + **476 (3D-sim)** = **2,625 acquisitions**.
121
  - **Single-Tx channel-capture frames:** 2,149 × 256 (2D-sim) + 476 × 64 (3D-sim) ≈ **5.8 × 10⁵ frames**.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - usct
12
  - sound-speed-estimation
13
  - attenuation
 
23
 
24
  ![Ring-array USCT reflectivity reconstruction of a digital breast phantom, next to its ground-truth sound-speed and attenuation maps](assets/phantom_179604449_z200.png)
25
 
26
+ *A 2D-sim breast cross-section, [`data/2d/phantom_179604449_z200.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/dartmouth-uct/data/2d/phantom_179604449_z200.hdf5), reconstructed as a reflectivity image beside the ground-truth sound-speed and attenuation maps stored in the file.*
27
 
28
  ## Dataset Description
29
 
 
96
 
97
  ## Processing the Dataset
98
 
99
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/dartmouth-uct/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
100
 
101
  Set `ZEA_FILE` at the top of the script and run `python reconstruct.py`; the figure at the top of this card is its output. `SOS_MAP = True` swaps the constant-sound-speed delays for a straight-ray integral through the ground-truth map.
102
 
 
115
 
116
  ## Dataset Quantification
117
 
118
+ **Current Open-H-RF release:** 2,625 HDF5 files; 257.62 GB (257,619,787,776 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
119
 
120
  - **Number of acquisitions:** **2,149 (2D-sim)** (1,859 dense + 290 fatty) + **476 (3D-sim)** = **2,625 acquisitions**.
121
  - **Single-Tx channel-capture frames:** 2,149 × 256 (2D-sim) + 476 × 64 (3D-sim) ≈ **5.8 × 10⁵ frames**.
kaist-snubh-barreleye/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
8
  tags:
9
  - ultrasound
10
  - rf
11
- - openh-rf
12
  - breast
13
  - in-vivo
14
  - plane-wave
@@ -23,7 +23,7 @@ size_categories:
23
 
24
  ![DAS B-mode reconstruction of a biopsy-proven invasive ductal carcinoma (S01_D1)](assets/main.png)
25
 
26
- *Delay-and-sum reconstruction of a biopsy-proven invasive ductal carcinoma, [`data/S01_D1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/kaist-snubh-barreleye/data/S01_D1.hdf5).*
27
 
28
  ## Dataset Description
29
 
@@ -70,13 +70,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
70
 
71
  ```bash
72
  zea process \
73
- --dataset hf://nvidia/OpenH-RF/kaist-snubh-barreleye/data/S01_D1.hdf5 \
74
- --config hf://nvidia/OpenH-RF/kaist-snubh-barreleye/pipeline.yaml \
75
  --n-frames 1 \
76
  --save-as png
77
  ```
78
 
79
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/kaist-snubh-barreleye/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
80
 
81
  This is a single-frame acquisition, so `zea process` outputs a `.png` rather than a `.gif` — this requires a `zea` build newer than the currently pinned 0.1.6 (single-frame PNG output landed after that release).
82
 
@@ -84,7 +84,7 @@ This is a single-frame acquisition, so `zea process` outputs a `.png` rather tha
84
 
85
  [zea v0.1.6](https://github.com/tue-bmd/zea)
86
 
87
- All data is delivered in the **zea HDF5** format (OpenH-RF spec). One HDF5 file per acquisition; one image track per file.
88
 
89
  ```
90
  hdf5/
@@ -94,12 +94,12 @@ hdf5/
94
  ```
95
 
96
  **`original/` — raw RF channel data.**
97
- - **Channel reordering** of the scanner's raw export into the OpenH-RF convention `(n_frames=1, n_tx=9, n_ax=Ns, n_el=192, n_ch=1)`.
98
  - No demodulation, decimation, band-pass filtering, or value clipping — `raw_data` is bit-faithful to the scanner export.
99
 
100
  ## Dataset Quantification
101
 
102
- **Current OpenH-RF release:** 70 HDF5 files; 802.10 MB (802,095,104 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
103
 
104
  - **Subjects:** 35 (S01–S37 with S11 and S29 unused, all female; age groups in *Subject Metadata*).
105
  - **Acquisitions:** 70 (2 repeat acquisitions per subject, named `<patient>_D1` / `<patient>_D2`).
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - breast
13
  - in-vivo
14
  - plane-wave
 
23
 
24
  ![DAS B-mode reconstruction of a biopsy-proven invasive ductal carcinoma (S01_D1)](assets/main.png)
25
 
26
+ *Delay-and-sum reconstruction of a biopsy-proven invasive ductal carcinoma, [`data/S01_D1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/kaist-snubh-barreleye/data/S01_D1.hdf5).*
27
 
28
  ## Dataset Description
29
 
 
70
 
71
  ```bash
72
  zea process \
73
+ --dataset hf://nvidia/Open-H-RF/kaist-snubh-barreleye/data/S01_D1.hdf5 \
74
+ --config hf://nvidia/Open-H-RF/kaist-snubh-barreleye/pipeline.yaml \
75
  --n-frames 1 \
76
  --save-as png
77
  ```
78
 
79
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/kaist-snubh-barreleye/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
80
 
81
  This is a single-frame acquisition, so `zea process` outputs a `.png` rather than a `.gif` — this requires a `zea` build newer than the currently pinned 0.1.6 (single-frame PNG output landed after that release).
82
 
 
84
 
85
  [zea v0.1.6](https://github.com/tue-bmd/zea)
86
 
87
+ All data is delivered in the **zea HDF5** format (Open-H-RF spec). One HDF5 file per acquisition; one image track per file.
88
 
89
  ```
90
  hdf5/
 
94
  ```
95
 
96
  **`original/` — raw RF channel data.**
97
+ - **Channel reordering** of the scanner's raw export into the Open-H-RF convention `(n_frames=1, n_tx=9, n_ax=Ns, n_el=192, n_ch=1)`.
98
  - No demodulation, decimation, band-pass filtering, or value clipping — `raw_data` is bit-faithful to the scanner export.
99
 
100
  ## Dataset Quantification
101
 
102
+ **Current Open-H-RF release:** 70 HDF5 files; 802.10 MB (802,095,104 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
103
 
104
  - **Subjects:** 35 (S01–S37 with S11 and S29 unused, all female; age groups in *Subject Metadata*).
105
  - **Acquisitions:** 70 (2 repeat acquisitions per subject, named `<patient>_D1` / `<patient>_D2`).
mosaic-nuevosono/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - IVUS
12
  - tracked-ultrasound
13
  language:
@@ -18,7 +18,7 @@ language:
18
 
19
  ![IVUS pullback: B-mode, segmentation overlay and pullback trajectory](assets/pullback.gif)
20
 
21
- *Pullback through [`data/22_12_10_52.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/mosaic-nuevosono/data/22_12_10_52.hdf5), reconstructed from the raw channel data. Left to right: B-mode, the same frame with the lumen and intima-media segmentation, and the linear-encoder pullback position with the current frame marked.*
22
 
23
  ## Dataset Description
24
 
@@ -52,7 +52,7 @@ Intended for IVUS tracking and segmentation applications, including lesion detec
52
 
53
  ## Processing the Dataset
54
 
55
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/mosaic-intelligence/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
56
 
57
  The script overlays the segmentation masks on frames spread evenly across the pullback:
58
 
@@ -139,6 +139,6 @@ A `zea.Pipeline` reconstructs the IVUS B-mode from the raw channel data (RF →
139
 
140
  ## Ethical Considerations
141
 
142
- Porcine animal study data only; contains no human subjects or PHI. Collected and released in compliance with applicable institutional animal care approvals and OpenH-RF governance and data-sharing policies.
143
 
144
  All contributed data, labels and metadata are released by Mosaic Intelligence Labs and NuevoSono; pre-existing hardware, software, simulation and platform intellectual property remains the property of the respective owners. The license is also recorded in each file's `metadata/credit` field.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - IVUS
12
  - tracked-ultrasound
13
  language:
 
18
 
19
  ![IVUS pullback: B-mode, segmentation overlay and pullback trajectory](assets/pullback.gif)
20
 
21
+ *Pullback through [`data/22_12_10_52.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/mosaic-nuevosono/data/22_12_10_52.hdf5), reconstructed from the raw channel data. Left to right: B-mode, the same frame with the lumen and intima-media segmentation, and the linear-encoder pullback position with the current frame marked.*
22
 
23
  ## Dataset Description
24
 
 
52
 
53
  ## Processing the Dataset
54
 
55
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/mosaic-intelligence/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
56
 
57
  The script overlays the segmentation masks on frames spread evenly across the pullback:
58
 
 
139
 
140
  ## Ethical Considerations
141
 
142
+ Porcine animal study data only; contains no human subjects or PHI. Collected and released in compliance with applicable institutional animal care approvals and Open-H-RF governance and data-sharing policies.
143
 
144
  All contributed data, labels and metadata are released by Mosaic Intelligence Labs and NuevoSono; pre-existing hardware, software, simulation and platform intellectual property remains the property of the respective owners. The license is also recorded in each file's `metadata/credit` field.
nv-raw2insights-us/README.md CHANGED
@@ -8,7 +8,7 @@ tags:
8
  - ultrasound
9
  - rf
10
  - iq
11
- - openh-rf
12
  - beamforming
13
  - sound-speed-estimation
14
  - phase-aberration
@@ -24,7 +24,7 @@ size_categories:
24
 
25
  ![DBUA B-mode reconstruction and estimated sound speed using NV-Raw2Insights-US data](assets/dbua-reconstruction.gif)
26
 
27
- *DBUA results using synthetic validation sample [`data/nv_r2i_us_validation_0084.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/nv-raw2insights-us/data/nv_r2i_us_validation_0084.hdf5): B-mode (left) and estimated sound speed (right). Bulk-speed calibration is followed by 400 spatial-refinement iterations, with fixed display scales. These are DBUA reconstructions, not predictions from an NV-Raw2Insights-US model.*
28
 
29
  <!-- assets/main.png is the unlabelled final B-mode panel from this run, for the dataset collage. -->
30
 
@@ -34,7 +34,7 @@ NV-Raw2Insights-US is a **simulated full-synthetic-aperture (FSA)** ultrasound d
34
 
35
  Each sample is a single-frame FSA acquisition from a **180-element linear array** simulated with **k-Wave** over a heterogeneous tissue phantom containing cysts. Every acquisition provides raw baseband **IQ channel data** alongside co-registered ground truth: a **speed-of-sound map**, a **binary cyst segmentation mask**, a **DAS B-mode** and a **focused-transmit B-mode**, and a per-sample **phase-aberration** value. All data are **synthetic**; no human or animal subjects are involved.
36
 
37
- This is the **zea-format (OpenH-RF) release**; the same simulations are also published in a Hugging Face `datasets`/Arrow build at [`nvidia/NV-Raw2Insights-US`](https://huggingface.co/datasets/nvidia/NV-Raw2Insights-US).
38
 
39
  ## Dataset Contributor(s)
40
 
@@ -60,7 +60,7 @@ Developing and benchmarking methods that operate on raw ultrasound channel data:
60
 
61
  ## Processing the Dataset
62
 
63
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/nv-raw2insights-us/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), which uses the [zea library](https://github.com/tue-bmd/zea) and streams the data from the Hugging Face Hub. It reconstructs both a plain DAS B-mode (the `pipeline.yaml` in this folder) and a sound-speed-corrected B-mode using the ground-truth `sos_map`.
64
 
65
  ## Dataset Format
66
 
@@ -87,7 +87,7 @@ Per-file contents:
87
 
88
  ## Dataset Quantification
89
 
90
- **Current OpenH-RF release:** 923 HDF5 files; 214.13 GB (214,133,178,368 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
91
 
92
  - **923 samples (830 train / 93 validation)**, one HDF5 per sample, all in `data/`; the split is carried in the filename.
93
  - Each sample is a single-frame FSA acquisition (frame index always 0).
 
8
  - ultrasound
9
  - rf
10
  - iq
11
+ - open-h-rf
12
  - beamforming
13
  - sound-speed-estimation
14
  - phase-aberration
 
24
 
25
  ![DBUA B-mode reconstruction and estimated sound speed using NV-Raw2Insights-US data](assets/dbua-reconstruction.gif)
26
 
27
+ *DBUA results using synthetic validation sample [`data/nv_r2i_us_validation_0084.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/nv-raw2insights-us/data/nv_r2i_us_validation_0084.hdf5): B-mode (left) and estimated sound speed (right). Bulk-speed calibration is followed by 400 spatial-refinement iterations, with fixed display scales. These are DBUA reconstructions, not predictions from an NV-Raw2Insights-US model.*
28
 
29
  <!-- assets/main.png is the unlabelled final B-mode panel from this run, for the dataset collage. -->
30
 
 
34
 
35
  Each sample is a single-frame FSA acquisition from a **180-element linear array** simulated with **k-Wave** over a heterogeneous tissue phantom containing cysts. Every acquisition provides raw baseband **IQ channel data** alongside co-registered ground truth: a **speed-of-sound map**, a **binary cyst segmentation mask**, a **DAS B-mode** and a **focused-transmit B-mode**, and a per-sample **phase-aberration** value. All data are **synthetic**; no human or animal subjects are involved.
36
 
37
+ This is the **zea-format (Open-H-RF) release**; the same simulations are also published in a Hugging Face `datasets`/Arrow build at [`nvidia/NV-Raw2Insights-US`](https://huggingface.co/datasets/nvidia/NV-Raw2Insights-US).
38
 
39
  ## Dataset Contributor(s)
40
 
 
60
 
61
  ## Processing the Dataset
62
 
63
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/nv-raw2insights-us/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), which uses the [zea library](https://github.com/tue-bmd/zea) and streams the data from the Hugging Face Hub. It reconstructs both a plain DAS B-mode (the `pipeline.yaml` in this folder) and a sound-speed-corrected B-mode using the ground-truth `sos_map`.
64
 
65
  ## Dataset Format
66
 
 
87
 
88
  ## Dataset Quantification
89
 
90
+ **Current Open-H-RF release:** 923 HDF5 files; 214.13 GB (214,133,178,368 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
91
 
92
  - **923 samples (830 train / 93 validation)**, one HDF5 per sample, all in `data/`; the split is carried in the filename.
93
  - Each sample is a single-frame FSA acquisition (frame index always 0).
oslo/A_cardiac/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - cardiac
14
  - in-vivo
15
  size_categories:
@@ -20,7 +20,7 @@ size_categories:
20
 
21
  ![Cine loop of a parasternal long-axis view](assets/hero.gif)
22
 
23
- *All 50 frames of [`Verasonics_P2-4_parasternal_long_subject_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
@@ -46,7 +46,7 @@ In-vivo human cardiac channel-capture data acquired with a Verasonics Vantage 25
46
 
47
  ## Intended Usage
48
 
49
- Generalized reconstruction and adaptive beamforming of cardiac ultrasound (RFP task 6.1). Suitable for B-mode reconstruction, aperture-domain processing, and deep-learning beamforming research on in-vivo cardiac data. (OpenH-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
@@ -62,11 +62,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
62
 
63
  ```bash
64
  zea process \
65
- --dataset hf://nvidia/OpenH-RF/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5 \
66
- --config hf://nvidia/OpenH-RF/oslo/A_cardiac/pipeline.yaml
67
  ```
68
 
69
- This `pipeline.yaml` holds the pipeline, display window and sector limits of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 2 HDF5 files; 3.53 GB (3,533,897,728 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 2
82
  - **Total channel-capture frames:** 75
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - cardiac
14
  - in-vivo
15
  size_categories:
 
20
 
21
  ![Cine loop of a parasternal long-axis view](assets/hero.gif)
22
 
23
+ *All 50 frames of [`Verasonics_P2-4_parasternal_long_subject_1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
 
46
 
47
  ## Intended Usage
48
 
49
+ Generalized reconstruction and adaptive beamforming of cardiac ultrasound (RFP task 6.1). Suitable for B-mode reconstruction, aperture-domain processing, and deep-learning beamforming research on in-vivo cardiac data. (Open-H-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
 
62
 
63
  ```bash
64
  zea process \
65
+ --dataset hf://nvidia/Open-H-RF/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5 \
66
+ --config hf://nvidia/Open-H-RF/oslo/A_cardiac/pipeline.yaml
67
  ```
68
 
69
+ This `pipeline.yaml` holds the pipeline, display window and sector limits of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 2 HDF5 files; 3.53 GB (3,533,897,728 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 2
82
  - **Total channel-capture frames:** 75
oslo/B_carotid/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - vascular
14
  - carotid
15
  - in-vivo
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Focused B-mode of a carotid cross-section](assets/hero.png)
23
 
24
- *First frame of [`L7_FI_carotid_cross_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
@@ -47,7 +47,7 @@ In-vivo human carotid-artery channel-capture data acquired with a Verasonics Van
47
 
48
  ## Intended Usage
49
 
50
- Generalized reconstruction and adaptive beamforming of vascular ultrasound (RFP task 6.1). (OpenH-RF RFP task 6.1 Generalized Reconstruction).
51
 
52
  ## Dataset Characterization
53
 
@@ -63,11 +63,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
63
 
64
  ```bash
65
  zea process \
66
- --dataset hf://nvidia/OpenH-RF/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5 \
67
- --config hf://nvidia/OpenH-RF/oslo/B_carotid/pipeline.yaml
68
  ```
69
 
70
- This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
71
 
72
  ## Dataset Format
73
 
@@ -77,7 +77,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
77
 
78
  ## Dataset Quantification
79
 
80
- **Current OpenH-RF release:** 3 HDF5 files; 219.48 MB (219,480,064 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 3
83
  - **Total channel-capture frames:** 6
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - vascular
14
  - carotid
15
  - in-vivo
 
21
 
22
  ![Focused B-mode of a carotid cross-section](assets/hero.png)
23
 
24
+ *First frame of [`L7_FI_carotid_cross_1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
 
47
 
48
  ## Intended Usage
49
 
50
+ Generalized reconstruction and adaptive beamforming of vascular ultrasound (RFP task 6.1). (Open-H-RF RFP task 6.1 Generalized Reconstruction).
51
 
52
  ## Dataset Characterization
53
 
 
63
 
64
  ```bash
65
  zea process \
66
+ --dataset hf://nvidia/Open-H-RF/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5 \
67
+ --config hf://nvidia/Open-H-RF/oslo/B_carotid/pipeline.yaml
68
  ```
69
 
70
+ This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
71
 
72
  ## Dataset Format
73
 
 
77
 
78
  ## Dataset Quantification
79
 
80
+ **Current Open-H-RF release:** 3 HDF5 files; 219.48 MB (219,480,064 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 3
83
  - **Total channel-capture frames:** 6
oslo/C_verasonics_phantom/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - phantom
14
  - cirs
15
  size_categories:
@@ -20,7 +20,7 @@ size_categories:
20
 
21
  ![Phased-array sector B-mode of a cyst phantom](assets/hero.png)
22
 
23
- *First frame of [`FI_P4_cysts_center.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
@@ -46,7 +46,7 @@ Tissue-mimicking and table-top phantom channel-capture data acquired on a Veraso
46
 
47
  ## Intended Usage
48
 
49
- Generalized reconstruction, image-quality assessment (resolution, contrast, dynamic range), and beamforming research (RFP task 6.1). Several acquisitions provide multiple transmit schemes on the same target for cross-method comparison. (OpenH-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
@@ -62,11 +62,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
62
 
63
  ```bash
64
  zea process \
65
- --dataset hf://nvidia/OpenH-RF/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5 \
66
- --config hf://nvidia/OpenH-RF/oslo/C_verasonics_phantom/pipeline.yaml
67
  ```
68
 
69
- This `pipeline.yaml` holds the pipeline, display window and sector limits of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 15 HDF5 files; 1.06 GB (1,058,734,080 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 15
82
  - **Total channel-capture frames:** 27
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - phantom
14
  - cirs
15
  size_categories:
 
20
 
21
  ![Phased-array sector B-mode of a cyst phantom](assets/hero.png)
22
 
23
+ *First frame of [`FI_P4_cysts_center.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
 
46
 
47
  ## Intended Usage
48
 
49
+ Generalized reconstruction, image-quality assessment (resolution, contrast, dynamic range), and beamforming research (RFP task 6.1). Several acquisitions provide multiple transmit schemes on the same target for cross-method comparison. (Open-H-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
 
62
 
63
  ```bash
64
  zea process \
65
+ --dataset hf://nvidia/Open-H-RF/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5 \
66
+ --config hf://nvidia/Open-H-RF/oslo/C_verasonics_phantom/pipeline.yaml
67
  ```
68
 
69
+ This `pipeline.yaml` holds the pipeline, display window and sector limits of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 15 HDF5 files; 1.06 GB (1,058,734,080 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 15
82
  - **Total channel-capture frames:** 27
oslo/D_alpinion_phantom/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - phantom
14
  - alpinion
15
  size_categories:
@@ -20,7 +20,7 @@ size_categories:
20
 
21
  ![Plane-wave compounded B-mode of hypoechoic cysts](assets/hero.png)
22
 
23
- *First frame of [`Alpinion_L3-8_CPWC_hypoechoic.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
@@ -46,7 +46,7 @@ Phantom channel-capture data acquired on an Alpinion E-Cube 12R research scanner
46
 
47
  ## Intended Usage
48
 
49
- Generalized reconstruction and image-quality assessment on a second hardware platform (RFP task 6.1); cross-vendor robustness studies. (OpenH-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
@@ -62,11 +62,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
62
 
63
  ```bash
64
  zea process \
65
- --dataset hf://nvidia/OpenH-RF/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5 \
66
- --config hf://nvidia/OpenH-RF/oslo/D_alpinion_phantom/pipeline.yaml
67
  ```
68
 
69
- This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 4 HDF5 files; 466.42 MB (466,419,712 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 4
82
  - **Total channel-capture frames:** 4
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - phantom
14
  - alpinion
15
  size_categories:
 
20
 
21
  ![Plane-wave compounded B-mode of hypoechoic cysts](assets/hero.png)
22
 
23
+ *First frame of [`Alpinion_L3-8_CPWC_hypoechoic.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
24
 
25
  ## Dataset Description
26
 
 
46
 
47
  ## Intended Usage
48
 
49
+ Generalized reconstruction and image-quality assessment on a second hardware platform (RFP task 6.1); cross-vendor robustness studies. (Open-H-RF RFP task 6.1 Generalized Reconstruction).
50
 
51
  ## Dataset Characterization
52
 
 
62
 
63
  ```bash
64
  zea process \
65
+ --dataset hf://nvidia/Open-H-RF/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5 \
66
+ --config hf://nvidia/Open-H-RF/oslo/D_alpinion_phantom/pipeline.yaml
67
  ```
68
 
69
+ This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 4 HDF5 files; 466.42 MB (466,419,712 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Number of acquisitions:** 4
82
  - **Total channel-capture frames:** 4
oslo/E_simulation/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - simulation
14
  - field-ii
15
  - synthetic
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![B-mode of the PICMUS numerical phantom](assets/hero.png)
23
 
24
- *First frame of [`PICMUS_numerical_calib_v2.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
@@ -47,7 +47,7 @@ Physics-based synthetic channel-capture data generated with the Field II ultraso
47
 
48
  ## Intended Usage
49
 
50
- Generalized reconstruction, beamformer development and validation with known ground truth (RFP task 6.1); resolution/contrast/dynamic-range characterization; training/validation of learned reconstruction methods. (OpenH-RF RFP task 6.1 Generalized Reconstruction).
51
 
52
  ## Dataset Characterization
53
 
@@ -63,11 +63,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
63
 
64
  ```bash
65
  zea process \
66
- --dataset hf://nvidia/OpenH-RF/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5 \
67
- --config hf://nvidia/OpenH-RF/oslo/E_simulation/pipeline.yaml
68
  ```
69
 
70
- This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
71
 
72
  ## Dataset Format
73
 
@@ -77,7 +77,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
77
 
78
  ## Dataset Quantification
79
 
80
- **Current OpenH-RF release:** 11 HDF5 files; 2.98 GB (2,980,642,816 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 11
83
  - **Total channel-capture frames:** 17
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - simulation
14
  - field-ii
15
  - synthetic
 
21
 
22
  ![B-mode of the PICMUS numerical phantom](assets/hero.png)
23
 
24
+ *First frame of [`PICMUS_numerical_calib_v2.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5), reconstructed from the raw channel data with `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
 
47
 
48
  ## Intended Usage
49
 
50
+ Generalized reconstruction, beamformer development and validation with known ground truth (RFP task 6.1); resolution/contrast/dynamic-range characterization; training/validation of learned reconstruction methods. (Open-H-RF RFP task 6.1 Generalized Reconstruction).
51
 
52
  ## Dataset Characterization
53
 
 
63
 
64
  ```bash
65
  zea process \
66
+ --dataset hf://nvidia/Open-H-RF/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5 \
67
+ --config hf://nvidia/Open-H-RF/oslo/E_simulation/pipeline.yaml
68
  ```
69
 
70
+ This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)).
71
 
72
  ## Dataset Format
73
 
 
77
 
78
  ## Dataset Quantification
79
 
80
+ **Current Open-H-RF release:** 11 HDF5 files; 2.98 GB (2,980,642,816 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 11
83
  - **Total channel-capture frames:** 17
oslo/F_motion/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - elastography
14
  - shear-wave
15
  - arfi
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Shear waves travelling outward after an acoustic push](assets/hero.gif)
23
 
24
- *First push-track sequence (frames 1-49) of [`SWE_L7_type_III.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/F_motion/SWE_L7_type_III.hdf5): B-mode (left) and axial displacement between consecutive frames (right), a lag-one autocorrelation (Kasai) estimate on the IQ beamformed with `pipeline.yaml`. The displacement estimate is not part of the reference pipeline.*
25
 
26
  ## Dataset Description
27
 
@@ -47,7 +47,7 @@ Shear-wave elastography (SWE) and acoustic-radiation-force-impulse (ARFI) push-t
47
 
48
  ## Intended Usage
49
 
50
- Motion estimation (RFP task 6.4): shear-wave velocity estimation, ARFI displacement tracking, and high-frame-rate motion reconstruction. (OpenH-RF RFP task 6.4 Motion Estimation).
51
 
52
  ## Dataset Characterization
53
 
@@ -63,11 +63,11 @@ The example acquisition can be processed with the `pipeline.yaml` definition in
63
 
64
  ```bash
65
  zea process \
66
- --dataset hf://nvidia/OpenH-RF/oslo/F_motion/SWE_L7_type_III.hdf5 \
67
- --config hf://nvidia/OpenH-RF/oslo/F_motion/pipeline.yaml
68
  ```
69
 
70
- This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)). These plane-wave tracking acquisitions use the non-focused `compound` pipeline, and the reference reconstruction shows a single tracking frame.
71
 
72
  ## Dataset Format
73
 
@@ -77,7 +77,7 @@ All acquisitions are stored in the **zea** HDF5 file format. Each `.hdf5` file i
77
 
78
  ## Dataset Quantification
79
 
80
- **Current OpenH-RF release:** 4 HDF5 files; 354.42 MB (354,418,688 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 4
83
  - **Total channel-capture frames:** 800
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - elastography
14
  - shear-wave
15
  - arfi
 
21
 
22
  ![Shear waves travelling outward after an acoustic push](assets/hero.gif)
23
 
24
+ *First push-track sequence (frames 1-49) of [`SWE_L7_type_III.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/F_motion/SWE_L7_type_III.hdf5): B-mode (left) and axial displacement between consecutive frames (right), a lag-one autocorrelation (Kasai) estimate on the IQ beamformed with `pipeline.yaml`. The displacement estimate is not part of the reference pipeline.*
25
 
26
  ## Dataset Description
27
 
 
47
 
48
  ## Intended Usage
49
 
50
+ Motion estimation (RFP task 6.4): shear-wave velocity estimation, ARFI displacement tracking, and high-frame-rate motion reconstruction. (Open-H-RF RFP task 6.4 Motion Estimation).
51
 
52
  ## Dataset Characterization
53
 
 
63
 
64
  ```bash
65
  zea process \
66
+ --dataset hf://nvidia/Open-H-RF/oslo/F_motion/SWE_L7_type_III.hdf5 \
67
+ --config hf://nvidia/Open-H-RF/oslo/F_motion/pipeline.yaml
68
  ```
69
 
70
+ This `pipeline.yaml` holds the pipeline and display window of that acquisition. Alternatively, all acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py) at the root of this collection, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` definitions at the collection root and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub; `parameters.yaml` picks the pipeline, display window and dynamic range per acquisition (see the [collection card](../README.md#processing-the-dataset)). These plane-wave tracking acquisitions use the non-focused `compound` pipeline, and the reference reconstruction shows a single tracking frame.
71
 
72
  ## Dataset Format
73
 
 
77
 
78
  ## Dataset Quantification
79
 
80
+ **Current Open-H-RF release:** 4 HDF5 files; 354.42 MB (354,418,688 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
81
 
82
  - **Number of acquisitions:** 4
83
  - **Total channel-capture frames:** 800
oslo/README.md CHANGED
@@ -9,7 +9,7 @@ language:
9
  tags:
10
  - ultrasound
11
  - rf
12
- - openh-rf
13
  - beamforming
14
  - channel-data
15
  size_categories:
@@ -20,11 +20,11 @@ size_categories:
20
 
21
  ![B-modes from five of the six sub-datasets: in-vivo cardiac, in-vivo carotid, Verasonics and Alpinion phantoms, and simulation](assets/hero.png)
22
 
23
- *First frames reconstructed from the raw channel data with `reconstruct.py`. Top: [`A_cardiac/Verasonics_P2-4_parasternal_long_subject_1`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5), [`A_cardiac/Verasonics_P2-4_apical_four_chamber_subject_1`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_apical_four_chamber_subject_1.hdf5), [`C_verasonics_phantom/FI_P4_cysts_center`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5). Bottom: [`B_carotid/L7_FI_carotid_cross_1`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5), [`C_verasonics_phantom/L7_FI_Verasonics_CIRS`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/C_verasonics_phantom/L7_FI_Verasonics_CIRS.hdf5), [`D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5), [`E_simulation/PICMUS_numerical_calib_v2`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5). Panels are scaled to a common height per row, not to a common physical scale.*
24
 
25
  ## Dataset Description
26
 
27
- Contributed by the **University of Oslo (UiO), Department of Informatics** (the USTB team) to the [OpenH-RF](https://github.com/open-h/OpenH-RF) initiative. All data is pre-beamformed (raw channel-capture) ultrasound stored in the **zea** HDF5 format and released under **CC BY 4.0**.
28
 
29
  39 acquisitions packaged into six application sub-datasets. Each sub-dataset folder contains its zea `.hdf5` files, a Hugging Face–style `README.md` data card, and one reference B-mode PNG per acquisition. The **`reconstruct.py`, `pipeline.yaml`, and the CC BY 4.0 `LICENCE` live once at the submission root** — the reconstruction reconstructs every sub-dataset (the pipeline is identical across folders), and the single LICENCE covers the whole collection (each data card also declares `license: cc-by-4.0` in its YAML frontmatter).
30
 
@@ -57,7 +57,7 @@ Total: **39 acquisitions**, 8.61 GB of stored HDF5 data.
57
 
58
  ## Processing the Dataset
59
 
60
- Every acquisition is reconstructable from the file alone — all acquisition parameters live in the zea `/scan` and `/probe` groups. The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/oslo/reconstruct.py), as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline*.yaml` and `parameters.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub: set `PATHS` to the acquisition to reconstruct (default: the apical four-chamber cardiac scan above) and `REFOCUS = True` to also emit the REFoCUS variant. See [Reconstruction Details](#reconstruction-details) for how each acquisition's pipeline is chosen. Each sub-dataset folder also holds a `pipeline.yaml` for its example acquisition, so it can be rendered with a single `zea process` command (see the sub-dataset cards).
61
 
62
  ## Dataset Format
63
 
@@ -65,7 +65,7 @@ Every acquisition is reconstructable from the file alone — all acquisition par
65
 
66
  ## Dataset Quantification
67
 
68
- **Current OpenH-RF release:** 39 HDF5 files; 8.61 GB (8,613,593,088 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
69
 
70
  ## Reconstruction Details
71
 
 
9
  tags:
10
  - ultrasound
11
  - rf
12
+ - open-h-rf
13
  - beamforming
14
  - channel-data
15
  size_categories:
 
20
 
21
  ![B-modes from five of the six sub-datasets: in-vivo cardiac, in-vivo carotid, Verasonics and Alpinion phantoms, and simulation](assets/hero.png)
22
 
23
+ *First frames reconstructed from the raw channel data with `reconstruct.py`. Top: [`A_cardiac/Verasonics_P2-4_parasternal_long_subject_1`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_parasternal_long_subject_1.hdf5), [`A_cardiac/Verasonics_P2-4_apical_four_chamber_subject_1`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/A_cardiac/Verasonics_P2-4_apical_four_chamber_subject_1.hdf5), [`C_verasonics_phantom/FI_P4_cysts_center`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/C_verasonics_phantom/FI_P4_cysts_center.hdf5). Bottom: [`B_carotid/L7_FI_carotid_cross_1`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/B_carotid/L7_FI_carotid_cross_1.hdf5), [`C_verasonics_phantom/L7_FI_Verasonics_CIRS`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/C_verasonics_phantom/L7_FI_Verasonics_CIRS.hdf5), [`D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/D_alpinion_phantom/Alpinion_L3-8_CPWC_hypoechoic.hdf5), [`E_simulation/PICMUS_numerical_calib_v2`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/oslo/E_simulation/PICMUS_numerical_calib_v2.hdf5). Panels are scaled to a common height per row, not to a common physical scale.*
24
 
25
  ## Dataset Description
26
 
27
+ Contributed by the **University of Oslo (UiO), Department of Informatics** (the USTB team) to the [Open-H-RF](https://github.com/open-h/Open-H-RF) initiative. All data is pre-beamformed (raw channel-capture) ultrasound stored in the **zea** HDF5 format and released under **CC BY 4.0**.
28
 
29
  39 acquisitions packaged into six application sub-datasets. Each sub-dataset folder contains its zea `.hdf5` files, a Hugging Face–style `README.md` data card, and one reference B-mode PNG per acquisition. The **`reconstruct.py`, `pipeline.yaml`, and the CC BY 4.0 `LICENCE` live once at the submission root** — the reconstruction reconstructs every sub-dataset (the pipeline is identical across folders), and the single LICENCE covers the whole collection (each data card also declares `license: cc-by-4.0` in its YAML frontmatter).
30
 
 
57
 
58
  ## Processing the Dataset
59
 
60
+ Every acquisition is reconstructable from the file alone — all acquisition parameters live in the zea `/scan` and `/probe` groups. The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/oslo/reconstruct.py), as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline*.yaml` and `parameters.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub: set `PATHS` to the acquisition to reconstruct (default: the apical four-chamber cardiac scan above) and `REFOCUS = True` to also emit the REFoCUS variant. See [Reconstruction Details](#reconstruction-details) for how each acquisition's pipeline is chosen. Each sub-dataset folder also holds a `pipeline.yaml` for its example acquisition, so it can be rendered with a single `zea process` command (see the sub-dataset cards).
61
 
62
  ## Dataset Format
63
 
 
65
 
66
  ## Dataset Quantification
67
 
68
+ **Current Open-H-RF release:** 39 HDF5 files; 8.61 GB (8,613,593,088 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
69
 
70
  ## Reconstruction Details
71
 
politorino/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - medical-imaging
12
  - beamforming
13
  - fascicle tracking
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Reconstructed cineloop from PAT02_w1.hdf5](assets/PAT02_w1.gif)
23
 
24
- *Cine loop of treadmill walking at 2 km/h, [`data/PAT02/PAT02_w1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/politorino/data/PAT02/PAT02_w1.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
25
 
26
  ## Dataset Description
27
 
@@ -62,7 +62,7 @@ This data was employed for an initial study evaluating fascicle tracking algorit
62
 
63
  ## Processing the Dataset
64
 
65
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/politorino/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
66
 
67
  The script reconstructs a B-mode from the raw channel data and overlays the stored fascicle tracking on it, writing a `.png`. The constants at the top of the script select what is drawn:
68
 
@@ -89,7 +89,7 @@ Per-sample contents of the HDF5:
89
 
90
  ## Dataset Quantification
91
 
92
- **Current OpenH-RF release:** 30 HDF5 files; 169.95 GB (169,950,314,496 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
93
 
94
  - 30 files - 6 acquisitions of 9.6s at 500 fps for each of the 5 subjects
95
  - **Stored HDF5 size:** 169.95 GB (169,950,314,496 bytes); 5.67 GB per file on average. Individual file sizes vary.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - medical-imaging
12
  - beamforming
13
  - fascicle tracking
 
21
 
22
  ![Reconstructed cineloop from PAT02_w1.hdf5](assets/PAT02_w1.gif)
23
 
24
+ *Cine loop of treadmill walking at 2 km/h, [`data/PAT02/PAT02_w1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/politorino/data/PAT02/PAT02_w1.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
25
 
26
  ## Dataset Description
27
 
 
62
 
63
  ## Processing the Dataset
64
 
65
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/politorino/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
66
 
67
  The script reconstructs a B-mode from the raw channel data and overlays the stored fascicle tracking on it, writing a `.png`. The constants at the top of the script select what is drawn:
68
 
 
89
 
90
  ## Dataset Quantification
91
 
92
+ **Current Open-H-RF release:** 30 HDF5 files; 169.95 GB (169,950,314,496 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
93
 
94
  - 30 files - 6 acquisitions of 9.6s at 500 fps for each of the 5 subjects
95
  - **Stored HDF5 size:** 169.95 GB (169,950,314,496 bytes); 5.67 GB per file on average. Individual file sizes vary.
resolvestroke/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - 3d
12
  - matrix-probe
13
  - diverging-wave
@@ -26,11 +26,11 @@ size_categories:
26
 
27
  <a href="assets/main_image.png"><img src="assets/main_image_small.png" alt="Transcranial contrast-enhanced power Doppler of a human subject (SP03-Left, bolus +10 s), x-z maximum-intensity projection" width="360"></a>
28
 
29
- *3D power Doppler of the transcranial CEUS acquisition [`clinical/SP03-Left/SP03-Left.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/resolvestroke/clinical/SP03-Left/SP03-Left.hdf5) at bolus +10 s, x-z maximum-intensity projection, reconstructed from the released channel data.*
30
 
31
  ## Dataset Description
32
 
33
- [Resolve Stroke](https://www.resolvestroke.com/) develops SYLVER, a software-driven ultrasound platform that supports clinical assessment in patients suspected of, or at risk for, cerebral perfusion abnormalities by improving visualization of cerebral vasculature and providing complementary information on cerebral perfusion. SYLVER images with a 32×32 matrix array probe at 2 MHz using diverging-wave transmits. CE and FDA clearances are expected in 2026. This directory holds the data Resolve Stroke contributes to OpenH-RF: pre-beamformed RF/IQ channel data from an imaging phantom, a flow phantom, and in-vivo transcranial acquisitions, all de-identified and released under CC BY 4.0. The in-vivo data comes from the CPP-approved SCULPT clinical study. Two transmit sequences are included: a saddle sequence that images a 2D plane for real-time B-mode, and a 4 kHz single-aperture volume sequence for CEUS and blood-flow measurement.
34
 
35
  Each dataset directory holds its data card (`README.md`), a `reconstruct.py` + `pipeline.yaml` beamforming recipe and, for the CEUS datasets, a power-Doppler reconstruction; the HDF5 files are on the Hub and the preview images in [`assets/`](assets/).
36
 
@@ -53,7 +53,7 @@ Each dataset directory holds its data card (`README.md`), a `reconstruct.py` + `
53
 
54
  ## Processing the Dataset
55
 
56
- Each sub-dataset has its own `reconstruct.py` and `pipeline.yaml`, as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF/tree/main/datasets/resolvestroke), built on the [zea library](https://github.com/tue-bmd/zea); the CEUS datasets add a power-Doppler reconstruction. See the data card of each sub-dataset for how to run them.
57
 
58
  The Python scripts carry their own `SPDX-License-Identifier: Apache-2.0` header; the dataset itself is CC BY 4.0.
59
 
@@ -63,7 +63,7 @@ The Python scripts carry their own `SPDX-License-Identifier: Apache-2.0` header;
63
 
64
  ## Dataset Quantification
65
 
66
- **Current OpenH-RF release:** 43 HDF5 files; 110.62 GB (110,619,394,048 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
67
 
68
  ## Contents
69
 
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - 3d
12
  - matrix-probe
13
  - diverging-wave
 
26
 
27
  <a href="assets/main_image.png"><img src="assets/main_image_small.png" alt="Transcranial contrast-enhanced power Doppler of a human subject (SP03-Left, bolus +10 s), x-z maximum-intensity projection" width="360"></a>
28
 
29
+ *3D power Doppler of the transcranial CEUS acquisition [`clinical/SP03-Left/SP03-Left.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/resolvestroke/clinical/SP03-Left/SP03-Left.hdf5) at bolus +10 s, x-z maximum-intensity projection, reconstructed from the released channel data.*
30
 
31
  ## Dataset Description
32
 
33
+ [Resolve Stroke](https://www.resolvestroke.com/) develops SYLVER, a software-driven ultrasound platform that supports clinical assessment in patients suspected of, or at risk for, cerebral perfusion abnormalities by improving visualization of cerebral vasculature and providing complementary information on cerebral perfusion. SYLVER images with a 32×32 matrix array probe at 2 MHz using diverging-wave transmits. CE and FDA clearances are expected in 2026. This directory holds the data Resolve Stroke contributes to Open-H-RF: pre-beamformed RF/IQ channel data from an imaging phantom, a flow phantom, and in-vivo transcranial acquisitions, all de-identified and released under CC BY 4.0. The in-vivo data comes from the CPP-approved SCULPT clinical study. Two transmit sequences are included: a saddle sequence that images a 2D plane for real-time B-mode, and a 4 kHz single-aperture volume sequence for CEUS and blood-flow measurement.
34
 
35
  Each dataset directory holds its data card (`README.md`), a `reconstruct.py` + `pipeline.yaml` beamforming recipe and, for the CEUS datasets, a power-Doppler reconstruction; the HDF5 files are on the Hub and the preview images in [`assets/`](assets/).
36
 
 
53
 
54
  ## Processing the Dataset
55
 
56
+ Each sub-dataset has its own `reconstruct.py` and `pipeline.yaml`, as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF/tree/main/datasets/resolvestroke), built on the [zea library](https://github.com/tue-bmd/zea); the CEUS datasets add a power-Doppler reconstruction. See the data card of each sub-dataset for how to run them.
57
 
58
  The Python scripts carry their own `SPDX-License-Identifier: Apache-2.0` header; the dataset itself is CC BY 4.0.
59
 
 
63
 
64
  ## Dataset Quantification
65
 
66
+ **Current Open-H-RF release:** 43 HDF5 files; 110.62 GB (110,619,394,048 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
67
 
68
  ## Contents
69
 
resolvestroke/clinical/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - 3d
12
  - matrix-probe
13
  - contrast-enhanced
@@ -24,7 +24,7 @@ size_categories:
24
 
25
  <img src="../assets/clinical_mvi_montage.png" alt="Microvascular image (x-z MIP of the computed reference) for the 20 clinical acquisitions" width="100%">
26
 
27
- *Reference microvascular image (`mvi`, x-z maximum-intensity projection of the computed reference) for the 20 acquisitions in [`clinical/`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical).*
28
 
29
  ## Dataset Description
30
 
@@ -71,12 +71,12 @@ Contrast-enhanced ultrasound flow/perfusion quantification, microbubble detectio
71
 
72
  ## Processing the Dataset
73
 
74
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/resolvestroke/clinical/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
75
 
76
- The reconstruction recipe is identical for all 20 acquisitions, so the scripts and pipeline YAMLs live once in this directory. Each script has a `SUBJECT` constant at the top (default `"SP02-Left-2"`); set it to any acquisition name from the inventory, e.g. `SUBJECT = "SP07-Right"`, and the `hf://` input path `hf://nvidia/OpenH-RF/resolvestroke/clinical/<SUBJECT>/<SUBJECT>.hdf5` and the output filenames follow from it. Swap `ZEA_FILE` (`INPUT` in `reconstruct_PD_3d.py`) for a local path to run against your own copy.
77
 
78
  ```bash
79
- uv run --project /path/to/OpenH-RF python reconstruct.py
80
  ```
81
 
82
  `reconstruct_PD_3d.py` (with `pipeline_PD_3d.yaml`) renders the power-Doppler reconstruction and `display_references.py` the computed reference maps; both are described below.
@@ -95,7 +95,7 @@ The files are in the zea HDF5 format, root `zea_version` 0.1.6. `data/raw_data`
95
 
96
  ## Dataset Quantification
97
 
98
- **Current OpenH-RF release:** 20 HDF5 files; 105.16 GB (105,159,196,672 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
99
 
100
  - Acquisitions: 20 (10 subjects × 2)
101
  - Frames per acquisition: 20000 (5 clips × 4000 frames)
@@ -129,26 +129,26 @@ One row per acquisition. Power Doppler: x-z maximum-intensity projection of each
129
  <tr>
130
  <th>Acquisition</th><th>Subject</th><th>Side</th><th>Power Doppler, five clips (x-z MIP)</th><th>Reference maps (mvi · velocity_radial_avg, x-z and y-z)</th>
131
  </tr>
132
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP01-Left-1"><code>SP01-Left-1</code></a></td><td>SP01</td><td>Left</td><td><a href="../assets/clinical/SP01-Left-1_pd_clips.png"><img src="../assets/clinical/SP01-Left-1_pd_clips.png" alt="SP01-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP01-Left-1_references.png"><img src="../assets/clinical/SP01-Left-1_references.png" alt="SP01-Left-1 reference maps" width="100%"></a></td></tr>
133
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP01-Left-2"><code>SP01-Left-2</code></a></td><td>SP01</td><td>Left</td><td><a href="../assets/clinical/SP01-Left-2_pd_clips.png"><img src="../assets/clinical/SP01-Left-2_pd_clips.png" alt="SP01-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP01-Left-2_references.png"><img src="../assets/clinical/SP01-Left-2_references.png" alt="SP01-Left-2 reference maps" width="100%"></a></td></tr>
134
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP02-Left-1"><code>SP02-Left-1</code></a></td><td>SP02</td><td>Left</td><td><a href="../assets/clinical/SP02-Left-1_pd_clips.png"><img src="../assets/clinical/SP02-Left-1_pd_clips.png" alt="SP02-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP02-Left-1_references.png"><img src="../assets/clinical/SP02-Left-1_references.png" alt="SP02-Left-1 reference maps" width="100%"></a></td></tr>
135
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP02-Left-2"><code>SP02-Left-2</code></a></td><td>SP02</td><td>Left</td><td><a href="../assets/clinical/SP02-Left-2_pd_clips.png"><img src="../assets/clinical/SP02-Left-2_pd_clips.png" alt="SP02-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP02-Left-2_references.png"><img src="../assets/clinical/SP02-Left-2_references.png" alt="SP02-Left-2 reference maps" width="100%"></a></td></tr>
136
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP03-Left"><code>SP03-Left</code></a></td><td>SP03</td><td>Left</td><td><a href="../assets/clinical/SP03-Left_pd_clips.png"><img src="../assets/clinical/SP03-Left_pd_clips.png" alt="SP03-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP03-Left_references.png"><img src="../assets/clinical/SP03-Left_references.png" alt="SP03-Left reference maps" width="100%"></a></td></tr>
137
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP03-Right"><code>SP03-Right</code></a></td><td>SP03</td><td>Right</td><td><a href="../assets/clinical/SP03-Right_pd_clips.png"><img src="../assets/clinical/SP03-Right_pd_clips.png" alt="SP03-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP03-Right_references.png"><img src="../assets/clinical/SP03-Right_references.png" alt="SP03-Right reference maps" width="100%"></a></td></tr>
138
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP04-Left-1"><code>SP04-Left-1</code></a></td><td>SP04</td><td>Left</td><td><a href="../assets/clinical/SP04-Left-1_pd_clips.png"><img src="../assets/clinical/SP04-Left-1_pd_clips.png" alt="SP04-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP04-Left-1_references.png"><img src="../assets/clinical/SP04-Left-1_references.png" alt="SP04-Left-1 reference maps" width="100%"></a></td></tr>
139
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP04-Left-2"><code>SP04-Left-2</code></a></td><td>SP04</td><td>Left</td><td><a href="../assets/clinical/SP04-Left-2_pd_clips.png"><img src="../assets/clinical/SP04-Left-2_pd_clips.png" alt="SP04-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP04-Left-2_references.png"><img src="../assets/clinical/SP04-Left-2_references.png" alt="SP04-Left-2 reference maps" width="100%"></a></td></tr>
140
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP05-Left"><code>SP05-Left</code></a></td><td>SP05</td><td>Left</td><td><a href="../assets/clinical/SP05-Left_pd_clips.png"><img src="../assets/clinical/SP05-Left_pd_clips.png" alt="SP05-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP05-Left_references.png"><img src="../assets/clinical/SP05-Left_references.png" alt="SP05-Left reference maps" width="100%"></a></td></tr>
141
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP05-Right"><code>SP05-Right</code></a></td><td>SP05</td><td>Right</td><td><a href="../assets/clinical/SP05-Right_pd_clips.png"><img src="../assets/clinical/SP05-Right_pd_clips.png" alt="SP05-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP05-Right_references.png"><img src="../assets/clinical/SP05-Right_references.png" alt="SP05-Right reference maps" width="100%"></a></td></tr>
142
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP06-Left"><code>SP06-Left</code></a></td><td>SP06</td><td>Left</td><td><a href="../assets/clinical/SP06-Left_pd_clips.png"><img src="../assets/clinical/SP06-Left_pd_clips.png" alt="SP06-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP06-Left_references.png"><img src="../assets/clinical/SP06-Left_references.png" alt="SP06-Left reference maps" width="100%"></a></td></tr>
143
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP06-Right"><code>SP06-Right</code></a></td><td>SP06</td><td>Right</td><td><a href="../assets/clinical/SP06-Right_pd_clips.png"><img src="../assets/clinical/SP06-Right_pd_clips.png" alt="SP06-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP06-Right_references.png"><img src="../assets/clinical/SP06-Right_references.png" alt="SP06-Right reference maps" width="100%"></a></td></tr>
144
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP07-Left"><code>SP07-Left</code></a></td><td>SP07</td><td>Left</td><td><a href="../assets/clinical/SP07-Left_pd_clips.png"><img src="../assets/clinical/SP07-Left_pd_clips.png" alt="SP07-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP07-Left_references.png"><img src="../assets/clinical/SP07-Left_references.png" alt="SP07-Left reference maps" width="100%"></a></td></tr>
145
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP07-Right"><code>SP07-Right</code></a></td><td>SP07</td><td>Right</td><td><a href="../assets/clinical/SP07-Right_pd_clips.png"><img src="../assets/clinical/SP07-Right_pd_clips.png" alt="SP07-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP07-Right_references.png"><img src="../assets/clinical/SP07-Right_references.png" alt="SP07-Right reference maps" width="100%"></a></td></tr>
146
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP08-Left"><code>SP08-Left</code></a></td><td>SP08</td><td>Left</td><td><a href="../assets/clinical/SP08-Left_pd_clips.png"><img src="../assets/clinical/SP08-Left_pd_clips.png" alt="SP08-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP08-Left_references.png"><img src="../assets/clinical/SP08-Left_references.png" alt="SP08-Left reference maps" width="100%"></a></td></tr>
147
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP08-Right"><code>SP08-Right</code></a></td><td>SP08</td><td>Right</td><td><a href="../assets/clinical/SP08-Right_pd_clips.png"><img src="../assets/clinical/SP08-Right_pd_clips.png" alt="SP08-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP08-Right_references.png"><img src="../assets/clinical/SP08-Right_references.png" alt="SP08-Right reference maps" width="100%"></a></td></tr>
148
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP09-Left-1"><code>SP09-Left-1</code></a></td><td>SP09</td><td>Left</td><td><a href="../assets/clinical/SP09-Left-1_pd_clips.png"><img src="../assets/clinical/SP09-Left-1_pd_clips.png" alt="SP09-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP09-Left-1_references.png"><img src="../assets/clinical/SP09-Left-1_references.png" alt="SP09-Left-1 reference maps" width="100%"></a></td></tr>
149
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP09-Left-2"><code>SP09-Left-2</code></a></td><td>SP09</td><td>Left</td><td><a href="../assets/clinical/SP09-Left-2_pd_clips.png"><img src="../assets/clinical/SP09-Left-2_pd_clips.png" alt="SP09-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP09-Left-2_references.png"><img src="../assets/clinical/SP09-Left-2_references.png" alt="SP09-Left-2 reference maps" width="100%"></a></td></tr>
150
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP10-Left"><code>SP10-Left</code></a></td><td>SP10</td><td>Left</td><td><a href="../assets/clinical/SP10-Left_pd_clips.png"><img src="../assets/clinical/SP10-Left_pd_clips.png" alt="SP10-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP10-Left_references.png"><img src="../assets/clinical/SP10-Left_references.png" alt="SP10-Left reference maps" width="100%"></a></td></tr>
151
- <tr><td><a href="https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/clinical/SP10-Right"><code>SP10-Right</code></a></td><td>SP10</td><td>Right</td><td><a href="../assets/clinical/SP10-Right_pd_clips.png"><img src="../assets/clinical/SP10-Right_pd_clips.png" alt="SP10-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP10-Right_references.png"><img src="../assets/clinical/SP10-Right_references.png" alt="SP10-Right reference maps" width="100%"></a></td></tr>
152
  </table>
153
 
154
  ## Subject Metadata
@@ -177,7 +177,7 @@ A display-only linear TGC (1.5 dB/cm) adds a depth-dependent dB gain to the rend
177
  Run (a GPU is strongly recommended: about 14 min per acquisition with `uv sync --extra gpu`, hours with the CPU-only JAX of the plain `uv sync`):
178
 
179
  ```bash
180
- uv run --project /path/to/OpenH-RF python reconstruct_PD_3d.py
181
  ```
182
 
183
  ## Computed References
@@ -204,7 +204,7 @@ Notes:
204
  ![Computed reference maps montage, SP02-Left-2](../assets/clinical_SP02-Left-2_references_montage.png)
205
 
206
  ```bash
207
- uv run --project /path/to/OpenH-RF python display_references.py
208
  ```
209
 
210
  ## Ethical Considerations
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - 3d
12
  - matrix-probe
13
  - contrast-enhanced
 
24
 
25
  <img src="../assets/clinical_mvi_montage.png" alt="Microvascular image (x-z MIP of the computed reference) for the 20 clinical acquisitions" width="100%">
26
 
27
+ *Reference microvascular image (`mvi`, x-z maximum-intensity projection of the computed reference) for the 20 acquisitions in [`clinical/`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical).*
28
 
29
  ## Dataset Description
30
 
 
71
 
72
  ## Processing the Dataset
73
 
74
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/resolvestroke/clinical/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
75
 
76
+ The reconstruction recipe is identical for all 20 acquisitions, so the scripts and pipeline YAMLs live once in this directory. Each script has a `SUBJECT` constant at the top (default `"SP02-Left-2"`); set it to any acquisition name from the inventory, e.g. `SUBJECT = "SP07-Right"`, and the `hf://` input path `hf://nvidia/Open-H-RF/resolvestroke/clinical/<SUBJECT>/<SUBJECT>.hdf5` and the output filenames follow from it. Swap `ZEA_FILE` (`INPUT` in `reconstruct_PD_3d.py`) for a local path to run against your own copy.
77
 
78
  ```bash
79
+ uv run --project /path/to/Open-H-RF python reconstruct.py
80
  ```
81
 
82
  `reconstruct_PD_3d.py` (with `pipeline_PD_3d.yaml`) renders the power-Doppler reconstruction and `display_references.py` the computed reference maps; both are described below.
 
95
 
96
  ## Dataset Quantification
97
 
98
+ **Current Open-H-RF release:** 20 HDF5 files; 105.16 GB (105,159,196,672 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
99
 
100
  - Acquisitions: 20 (10 subjects × 2)
101
  - Frames per acquisition: 20000 (5 clips × 4000 frames)
 
129
  <tr>
130
  <th>Acquisition</th><th>Subject</th><th>Side</th><th>Power Doppler, five clips (x-z MIP)</th><th>Reference maps (mvi · velocity_radial_avg, x-z and y-z)</th>
131
  </tr>
132
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP01-Left-1"><code>SP01-Left-1</code></a></td><td>SP01</td><td>Left</td><td><a href="../assets/clinical/SP01-Left-1_pd_clips.png"><img src="../assets/clinical/SP01-Left-1_pd_clips.png" alt="SP01-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP01-Left-1_references.png"><img src="../assets/clinical/SP01-Left-1_references.png" alt="SP01-Left-1 reference maps" width="100%"></a></td></tr>
133
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP01-Left-2"><code>SP01-Left-2</code></a></td><td>SP01</td><td>Left</td><td><a href="../assets/clinical/SP01-Left-2_pd_clips.png"><img src="../assets/clinical/SP01-Left-2_pd_clips.png" alt="SP01-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP01-Left-2_references.png"><img src="../assets/clinical/SP01-Left-2_references.png" alt="SP01-Left-2 reference maps" width="100%"></a></td></tr>
134
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP02-Left-1"><code>SP02-Left-1</code></a></td><td>SP02</td><td>Left</td><td><a href="../assets/clinical/SP02-Left-1_pd_clips.png"><img src="../assets/clinical/SP02-Left-1_pd_clips.png" alt="SP02-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP02-Left-1_references.png"><img src="../assets/clinical/SP02-Left-1_references.png" alt="SP02-Left-1 reference maps" width="100%"></a></td></tr>
135
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP02-Left-2"><code>SP02-Left-2</code></a></td><td>SP02</td><td>Left</td><td><a href="../assets/clinical/SP02-Left-2_pd_clips.png"><img src="../assets/clinical/SP02-Left-2_pd_clips.png" alt="SP02-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP02-Left-2_references.png"><img src="../assets/clinical/SP02-Left-2_references.png" alt="SP02-Left-2 reference maps" width="100%"></a></td></tr>
136
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP03-Left"><code>SP03-Left</code></a></td><td>SP03</td><td>Left</td><td><a href="../assets/clinical/SP03-Left_pd_clips.png"><img src="../assets/clinical/SP03-Left_pd_clips.png" alt="SP03-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP03-Left_references.png"><img src="../assets/clinical/SP03-Left_references.png" alt="SP03-Left reference maps" width="100%"></a></td></tr>
137
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP03-Right"><code>SP03-Right</code></a></td><td>SP03</td><td>Right</td><td><a href="../assets/clinical/SP03-Right_pd_clips.png"><img src="../assets/clinical/SP03-Right_pd_clips.png" alt="SP03-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP03-Right_references.png"><img src="../assets/clinical/SP03-Right_references.png" alt="SP03-Right reference maps" width="100%"></a></td></tr>
138
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP04-Left-1"><code>SP04-Left-1</code></a></td><td>SP04</td><td>Left</td><td><a href="../assets/clinical/SP04-Left-1_pd_clips.png"><img src="../assets/clinical/SP04-Left-1_pd_clips.png" alt="SP04-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP04-Left-1_references.png"><img src="../assets/clinical/SP04-Left-1_references.png" alt="SP04-Left-1 reference maps" width="100%"></a></td></tr>
139
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP04-Left-2"><code>SP04-Left-2</code></a></td><td>SP04</td><td>Left</td><td><a href="../assets/clinical/SP04-Left-2_pd_clips.png"><img src="../assets/clinical/SP04-Left-2_pd_clips.png" alt="SP04-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP04-Left-2_references.png"><img src="../assets/clinical/SP04-Left-2_references.png" alt="SP04-Left-2 reference maps" width="100%"></a></td></tr>
140
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP05-Left"><code>SP05-Left</code></a></td><td>SP05</td><td>Left</td><td><a href="../assets/clinical/SP05-Left_pd_clips.png"><img src="../assets/clinical/SP05-Left_pd_clips.png" alt="SP05-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP05-Left_references.png"><img src="../assets/clinical/SP05-Left_references.png" alt="SP05-Left reference maps" width="100%"></a></td></tr>
141
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP05-Right"><code>SP05-Right</code></a></td><td>SP05</td><td>Right</td><td><a href="../assets/clinical/SP05-Right_pd_clips.png"><img src="../assets/clinical/SP05-Right_pd_clips.png" alt="SP05-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP05-Right_references.png"><img src="../assets/clinical/SP05-Right_references.png" alt="SP05-Right reference maps" width="100%"></a></td></tr>
142
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP06-Left"><code>SP06-Left</code></a></td><td>SP06</td><td>Left</td><td><a href="../assets/clinical/SP06-Left_pd_clips.png"><img src="../assets/clinical/SP06-Left_pd_clips.png" alt="SP06-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP06-Left_references.png"><img src="../assets/clinical/SP06-Left_references.png" alt="SP06-Left reference maps" width="100%"></a></td></tr>
143
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP06-Right"><code>SP06-Right</code></a></td><td>SP06</td><td>Right</td><td><a href="../assets/clinical/SP06-Right_pd_clips.png"><img src="../assets/clinical/SP06-Right_pd_clips.png" alt="SP06-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP06-Right_references.png"><img src="../assets/clinical/SP06-Right_references.png" alt="SP06-Right reference maps" width="100%"></a></td></tr>
144
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP07-Left"><code>SP07-Left</code></a></td><td>SP07</td><td>Left</td><td><a href="../assets/clinical/SP07-Left_pd_clips.png"><img src="../assets/clinical/SP07-Left_pd_clips.png" alt="SP07-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP07-Left_references.png"><img src="../assets/clinical/SP07-Left_references.png" alt="SP07-Left reference maps" width="100%"></a></td></tr>
145
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP07-Right"><code>SP07-Right</code></a></td><td>SP07</td><td>Right</td><td><a href="../assets/clinical/SP07-Right_pd_clips.png"><img src="../assets/clinical/SP07-Right_pd_clips.png" alt="SP07-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP07-Right_references.png"><img src="../assets/clinical/SP07-Right_references.png" alt="SP07-Right reference maps" width="100%"></a></td></tr>
146
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP08-Left"><code>SP08-Left</code></a></td><td>SP08</td><td>Left</td><td><a href="../assets/clinical/SP08-Left_pd_clips.png"><img src="../assets/clinical/SP08-Left_pd_clips.png" alt="SP08-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP08-Left_references.png"><img src="../assets/clinical/SP08-Left_references.png" alt="SP08-Left reference maps" width="100%"></a></td></tr>
147
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP08-Right"><code>SP08-Right</code></a></td><td>SP08</td><td>Right</td><td><a href="../assets/clinical/SP08-Right_pd_clips.png"><img src="../assets/clinical/SP08-Right_pd_clips.png" alt="SP08-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP08-Right_references.png"><img src="../assets/clinical/SP08-Right_references.png" alt="SP08-Right reference maps" width="100%"></a></td></tr>
148
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP09-Left-1"><code>SP09-Left-1</code></a></td><td>SP09</td><td>Left</td><td><a href="../assets/clinical/SP09-Left-1_pd_clips.png"><img src="../assets/clinical/SP09-Left-1_pd_clips.png" alt="SP09-Left-1 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP09-Left-1_references.png"><img src="../assets/clinical/SP09-Left-1_references.png" alt="SP09-Left-1 reference maps" width="100%"></a></td></tr>
149
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP09-Left-2"><code>SP09-Left-2</code></a></td><td>SP09</td><td>Left</td><td><a href="../assets/clinical/SP09-Left-2_pd_clips.png"><img src="../assets/clinical/SP09-Left-2_pd_clips.png" alt="SP09-Left-2 power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP09-Left-2_references.png"><img src="../assets/clinical/SP09-Left-2_references.png" alt="SP09-Left-2 reference maps" width="100%"></a></td></tr>
150
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP10-Left"><code>SP10-Left</code></a></td><td>SP10</td><td>Left</td><td><a href="../assets/clinical/SP10-Left_pd_clips.png"><img src="../assets/clinical/SP10-Left_pd_clips.png" alt="SP10-Left power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP10-Left_references.png"><img src="../assets/clinical/SP10-Left_references.png" alt="SP10-Left reference maps" width="100%"></a></td></tr>
151
+ <tr><td><a href="https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/clinical/SP10-Right"><code>SP10-Right</code></a></td><td>SP10</td><td>Right</td><td><a href="../assets/clinical/SP10-Right_pd_clips.png"><img src="../assets/clinical/SP10-Right_pd_clips.png" alt="SP10-Right power Doppler of the five clips" width="100%"></a></td><td><a href="../assets/clinical/SP10-Right_references.png"><img src="../assets/clinical/SP10-Right_references.png" alt="SP10-Right reference maps" width="100%"></a></td></tr>
152
  </table>
153
 
154
  ## Subject Metadata
 
177
  Run (a GPU is strongly recommended: about 14 min per acquisition with `uv sync --extra gpu`, hours with the CPU-only JAX of the plain `uv sync`):
178
 
179
  ```bash
180
+ uv run --project /path/to/Open-H-RF python reconstruct_PD_3d.py
181
  ```
182
 
183
  ## Computed References
 
204
  ![Computed reference maps montage, SP02-Left-2](../assets/clinical_SP02-Left-2_references_montage.png)
205
 
206
  ```bash
207
+ uv run --project /path/to/Open-H-RF python display_references.py
208
  ```
209
 
210
  ## Ethical Considerations
resolvestroke/phantom_flow/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - 3d
12
  - matrix-probe
13
  - contrast-enhanced
@@ -23,7 +23,7 @@ size_categories:
23
 
24
  ![Power-Doppler 3D MIP montage with reference mvi](../assets/phantom_flow_PD_montage.png)
25
 
26
- *Power Doppler of the five clips (x-z and y-z maximum-intensity projections), with the reference `mvi` in the last column, reconstructed from [`phantom_flow.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/resolvestroke/phantom_flow/phantom_flow.hdf5).*
27
 
28
  ## Dataset Description
29
 
@@ -68,10 +68,10 @@ Contrast-enhanced ultrasound flow quantification, microbubble detection and trac
68
 
69
  ## Processing the Dataset
70
 
71
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/resolvestroke/phantom_flow/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
72
 
73
  ```bash
74
- uv run --project /path/to/OpenH-RF python reconstruct.py
75
  ```
76
 
77
  `reconstruct_PD_3d.py` (with `pipeline_PD_3d.yaml`) renders the power-Doppler reconstruction and `display_references.py` the computed reference maps; both are described below.
@@ -90,7 +90,7 @@ The file is in the zea HDF5 format, root `zea_version` 0.1.6, validated `complia
90
 
91
  ## Dataset Quantification
92
 
93
- **Current OpenH-RF release:** 1 HDF5 file; 5.25 GB (5,250,744,320 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
94
 
95
  - Frames: 20000 (5 clips × 4000 frames)
96
  - Frame rate: 4000 Hz (within each clip)
@@ -136,7 +136,7 @@ The resulting montage is shown at the top of this card.
136
  Run (a GPU is strongly recommended: about 14 min per acquisition with `uv sync --extra gpu`, hours with the CPU-only JAX of the plain `uv sync`):
137
 
138
  ```bash
139
- uv run --project /path/to/OpenH-RF python reconstruct_PD_3d.py
140
  ```
141
 
142
  ## Computed References
@@ -162,7 +162,7 @@ Notes:
162
 
163
  ![Computed reference maps montage](../assets/phantom_flow_references_montage.png)
164
 
165
- Run: `uv run --project /path/to/OpenH-RF python display_references.py`
166
 
167
  ## Known Issues
168
 
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - 3d
12
  - matrix-probe
13
  - contrast-enhanced
 
23
 
24
  ![Power-Doppler 3D MIP montage with reference mvi](../assets/phantom_flow_PD_montage.png)
25
 
26
+ *Power Doppler of the five clips (x-z and y-z maximum-intensity projections), with the reference `mvi` in the last column, reconstructed from [`phantom_flow.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/resolvestroke/phantom_flow/phantom_flow.hdf5).*
27
 
28
  ## Dataset Description
29
 
 
68
 
69
  ## Processing the Dataset
70
 
71
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/resolvestroke/phantom_flow/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
72
 
73
  ```bash
74
+ uv run --project /path/to/Open-H-RF python reconstruct.py
75
  ```
76
 
77
  `reconstruct_PD_3d.py` (with `pipeline_PD_3d.yaml`) renders the power-Doppler reconstruction and `display_references.py` the computed reference maps; both are described below.
 
90
 
91
  ## Dataset Quantification
92
 
93
+ **Current Open-H-RF release:** 1 HDF5 file; 5.25 GB (5,250,744,320 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
94
 
95
  - Frames: 20000 (5 clips × 4000 frames)
96
  - Frame rate: 4000 Hz (within each clip)
 
136
  Run (a GPU is strongly recommended: about 14 min per acquisition with `uv sync --extra gpu`, hours with the CPU-only JAX of the plain `uv sync`):
137
 
138
  ```bash
139
+ uv run --project /path/to/Open-H-RF python reconstruct_PD_3d.py
140
  ```
141
 
142
  ## Computed References
 
162
 
163
  ![Computed reference maps montage](../assets/phantom_flow_references_montage.png)
164
 
165
+ Run: `uv run --project /path/to/Open-H-RF python display_references.py`
166
 
167
  ## Known Issues
168
 
resolvestroke/phantom_mp/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - 3d
12
  - matrix-probe
13
  - phantom
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Reference B-mode (two perpendicular sectors)](../assets/phantom_mp_bmode.png)
23
 
24
- *B-mode of one frame, x-z and y-z sectors, reconstructed from [`phantom_mp.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/resolvestroke/phantom_mp/phantom_mp.hdf5).*
25
 
26
  ## Dataset Description
27
 
@@ -56,10 +56,10 @@ Beamforming and reconstruction research (RFP task group 6.1, Generalized Reconst
56
 
57
  ## Processing the Dataset
58
 
59
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/resolvestroke/phantom_mp/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
60
 
61
  ```bash
62
- uv run --project /path/to/OpenH-RF python reconstruct.py
63
  ```
64
 
65
  The Python scripts carry their own `SPDX-License-Identifier: Apache-2.0` header; the dataset itself is CC BY 4.0.
@@ -72,7 +72,7 @@ Single zea HDF5 file (`phantom_mp.hdf5`), one track holding the raw channel data
72
 
73
  ## Dataset Quantification
74
 
75
- **Current OpenH-RF release:** 1 HDF5 file; 33.75 MB (33,751,040 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
76
 
77
  - Frames: 1000 (single acquisition)
78
  - Train / val / test split: N/A
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - 3d
12
  - matrix-probe
13
  - phantom
 
21
 
22
  ![Reference B-mode (two perpendicular sectors)](../assets/phantom_mp_bmode.png)
23
 
24
+ *B-mode of one frame, x-z and y-z sectors, reconstructed from [`phantom_mp.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/resolvestroke/phantom_mp/phantom_mp.hdf5).*
25
 
26
  ## Dataset Description
27
 
 
56
 
57
  ## Processing the Dataset
58
 
59
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/resolvestroke/phantom_mp/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
60
 
61
  ```bash
62
+ uv run --project /path/to/Open-H-RF python reconstruct.py
63
  ```
64
 
65
  The Python scripts carry their own `SPDX-License-Identifier: Apache-2.0` header; the dataset itself is CC BY 4.0.
 
72
 
73
  ## Dataset Quantification
74
 
75
+ **Current Open-H-RF release:** 1 HDF5 file; 33.75 MB (33,751,040 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
76
 
77
  - Frames: 1000 (single acquisition)
78
  - Train / val / test split: N/A
resolvestroke/saddle/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - matrix-probe
12
  - diverging-wave
13
  - b-mode
@@ -24,13 +24,13 @@ size_categories:
24
 
25
  ![Saddle-array B-modes for all 21 datasets](../assets/saddle_bmode_montage.png)
26
 
27
- *Saddle-array B-modes of all 21 files in [`saddle/data/`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/resolvestroke/saddle/data), one panel per dataset; the phantom (`PMP01`) shows a regular column of point targets.*
28
 
29
  ## Dataset Description
30
 
31
  Single-frame anatomical B-mode acquisitions from the "saddle" imaging sequence of Resolve Stroke's SYLVER ultrasound device, using a 32×32 matrix probe. Each raw acquisition contains, alongside the multi-thousand-frame contrast-enhanced ultrasound (CEUS) sequence, one wide-angle diverging-wave frame (the *saddle* sequence: `x_ang` −24°…+24° in nine steps, no elevation steering, cylindrical elevation focus) received on the full 1024-element aperture through four consecutive 256-element receive events per transmit. Beamformed, this single frame gives a sector B-mode of the imaging plane: the structural reference view acquired at the same probe placement as the contrast (CEUS) recording.
32
 
33
- This directory contains one such reference B-mode per dataset: 20 clinical transcranial acquisitions (SCULPT study) and 1 static matrix-probe imaging phantom (21 files total). It is the structural companion to the OpenH-RF Resolve Stroke clinical CEUS clip submission, and the two use the same anonymized subject codes.
34
 
35
  ## Dataset Contributor(s)
36
 
@@ -51,7 +51,7 @@ This directory contains one such reference B-mode per dataset: 20 clinical trans
51
 
52
  ## Intended Usage
53
 
54
- Matrix-probe diverging-wave beamforming research, anatomical B-mode reconstruction, and structural reference for the companion transcranial CEUS flow/perfusion datasets (OpenH-RF request-for-proposals task group 6.2, Blood Flow).
55
 
56
  ## Dataset Characterization
57
 
@@ -61,10 +61,10 @@ Matrix-probe diverging-wave beamforming research, anatomical B-mode reconstructi
61
 
62
  ## Processing the Dataset
63
 
64
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/resolvestroke/saddle/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
65
 
66
  ```bash
67
- uv run --project /path/to/OpenH-RF python reconstruct.py
68
  ```
69
 
70
  `reconstruct.py` streams `PMP01.hdf5` from the Hub by default; set `ZEA_FILE` at the top of the script to another of the 21 files (or a local path). The B-mode PNG is written to `assets/<file>_bmode.png`.
@@ -83,7 +83,7 @@ The hardware time-gain compensation is baked into `raw_data`; `scan/tgc_gain_cur
83
 
84
  ## Dataset Quantification
85
 
86
- **Current OpenH-RF release:** 21 HDF5 files; 175.70 MB (175,702,016 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
87
 
88
  - Files: 21 (20 clinical + 1 phantom)
89
  - Frames per file: 1
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - matrix-probe
12
  - diverging-wave
13
  - b-mode
 
24
 
25
  ![Saddle-array B-modes for all 21 datasets](../assets/saddle_bmode_montage.png)
26
 
27
+ *Saddle-array B-modes of all 21 files in [`saddle/data/`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/resolvestroke/saddle/data), one panel per dataset; the phantom (`PMP01`) shows a regular column of point targets.*
28
 
29
  ## Dataset Description
30
 
31
  Single-frame anatomical B-mode acquisitions from the "saddle" imaging sequence of Resolve Stroke's SYLVER ultrasound device, using a 32×32 matrix probe. Each raw acquisition contains, alongside the multi-thousand-frame contrast-enhanced ultrasound (CEUS) sequence, one wide-angle diverging-wave frame (the *saddle* sequence: `x_ang` −24°…+24° in nine steps, no elevation steering, cylindrical elevation focus) received on the full 1024-element aperture through four consecutive 256-element receive events per transmit. Beamformed, this single frame gives a sector B-mode of the imaging plane: the structural reference view acquired at the same probe placement as the contrast (CEUS) recording.
32
 
33
+ This directory contains one such reference B-mode per dataset: 20 clinical transcranial acquisitions (SCULPT study) and 1 static matrix-probe imaging phantom (21 files total). It is the structural companion to the Open-H-RF Resolve Stroke clinical CEUS clip submission, and the two use the same anonymized subject codes.
34
 
35
  ## Dataset Contributor(s)
36
 
 
51
 
52
  ## Intended Usage
53
 
54
+ Matrix-probe diverging-wave beamforming research, anatomical B-mode reconstruction, and structural reference for the companion transcranial CEUS flow/perfusion datasets (Open-H-RF request-for-proposals task group 6.2, Blood Flow).
55
 
56
  ## Dataset Characterization
57
 
 
61
 
62
  ## Processing the Dataset
63
 
64
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/resolvestroke/saddle/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
65
 
66
  ```bash
67
+ uv run --project /path/to/Open-H-RF python reconstruct.py
68
  ```
69
 
70
  `reconstruct.py` streams `PMP01.hdf5` from the Hub by default; set `ZEA_FILE` at the top of the script to another of the 21 files (or a local path). The B-mode PNG is written to `assets/<file>_bmode.png`.
 
83
 
84
  ## Dataset Quantification
85
 
86
+ **Current Open-H-RF release:** 21 HDF5 files; 175.70 MB (175,702,016 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
87
 
88
  - Files: 21 (20 clinical + 1 phantom)
89
  - Frames per file: 1
siemens-healthineers/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - medical-imaging
12
  - beamforming
13
  - in-vivo
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![DAS B-mode reconstructions of four anatomies from the Siemens FSA channel data](assets/anatomies.png)
23
 
24
- *Four of the anatomies in this dataset, each beamformed from `data/raw_data`: [`Subject_03_acq_018`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/siemens-healthineers/data/Subject_03_acq_018.hdf5), [`Subject_02_acq_004`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/siemens-healthineers/data/Subject_02_acq_004.hdf5), [`Subject_03_acq_008`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/siemens-healthineers/data/Subject_03_acq_008.hdf5), [`Subject_05_acq_031`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/siemens-healthineers/data/Subject_05_acq_031.hdf5).*
25
 
26
  ## Dataset Description
27
 
@@ -61,11 +61,11 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
61
 
62
  ```bash
63
  zea process \
64
- --dataset hf://nvidia/OpenH-RF/siemens-healthineers/data/Subject_03_acq_008.hdf5 \
65
- --config hf://nvidia/OpenH-RF/siemens-healthineers/pipeline.yaml
66
  ```
67
 
68
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/siemens-healthineers/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
69
 
70
  ## Dataset Format
71
 
@@ -105,7 +105,7 @@ All spatial maps carry per-pixel Cartesian `coordinates` in meters, last axis `[
105
 
106
  ## Dataset Quantification
107
 
108
- **Current OpenH-RF release:** 590 HDF5 files; 228.54 GB (228,538,449,920 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
109
 
110
  - **590 acquisitions (4,539 frames) from 15 subjects**, one continuous dataset: 51 acquisitions / 411 frames (Subjects 01–03) from the first acquisition round and 539 acquisitions / 4,128 frames (Subjects 04–15) from the second.
111
  - **File naming:** one HDF5 per acquisition, `Subject_XX_acq_NNN.hdf5` (acquisitions numbered per subject in acquisition order).
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - medical-imaging
12
  - beamforming
13
  - in-vivo
 
21
 
22
  ![DAS B-mode reconstructions of four anatomies from the Siemens FSA channel data](assets/anatomies.png)
23
 
24
+ *Four of the anatomies in this dataset, each beamformed from `data/raw_data`: [`Subject_03_acq_018`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/siemens-healthineers/data/Subject_03_acq_018.hdf5), [`Subject_02_acq_004`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/siemens-healthineers/data/Subject_02_acq_004.hdf5), [`Subject_03_acq_008`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/siemens-healthineers/data/Subject_03_acq_008.hdf5), [`Subject_05_acq_031`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/siemens-healthineers/data/Subject_05_acq_031.hdf5).*
25
 
26
  ## Dataset Description
27
 
 
61
 
62
  ```bash
63
  zea process \
64
+ --dataset hf://nvidia/Open-H-RF/siemens-healthineers/data/Subject_03_acq_008.hdf5 \
65
+ --config hf://nvidia/Open-H-RF/siemens-healthineers/pipeline.yaml
66
  ```
67
 
68
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/siemens-healthineers/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
69
 
70
  ## Dataset Format
71
 
 
105
 
106
  ## Dataset Quantification
107
 
108
+ **Current Open-H-RF release:** 590 HDF5 files; 228.54 GB (228,538,449,920 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
109
 
110
  - **590 acquisitions (4,539 frames) from 15 subjects**, one continuous dataset: 51 acquisitions / 411 frames (Subjects 01–03) from the first acquisition round and 539 acquisitions / 4,128 frames (Subjects 04–15) from the second.
111
  - **File naming:** one HDF5 per acquisition, `Subject_XX_acq_NNN.hdf5` (acquisitions numbered per subject in acquisition order).
stanford-murine/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
8
  tags:
9
  - ultrasound
10
  - rf
11
- - openh-rf
12
  - beamforming
13
  - sound-speed-estimation
14
  - aberration-correction
@@ -25,7 +25,7 @@ size_categories:
25
 
26
  ![B-mode reconstructions of a rat liver and the ATS 549 phantom](assets/hero.png)
27
 
28
- *Frame 0 reconstructed with `reconstruct.py` (L12-3v, 60 dB). Top: the exposed liver of [Rat3](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/stanford-murine/data/RatExperiments/VerasonicsAcq/Rat3/ExposedLiver/DATA_Tracks_20190319_115804.hdf5), `multifocal` track. Bottom: the ATS 549 phantom's [lesions](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/stanford-murine/data/SoSExperiments/august13_2020/L12_3v/ATS_phantom/lesion/DATA_Tracks_20200813_164505.hdf5) and [point targets](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/stanford-murine/data/SoSExperiments/august13_2020/L12_3v/ATS_phantom/point_target/DATA_Tracks_20200813_164745.hdf5), `hadamard` track. The point targets curve into arcs because the phantom is beamformed at 1540 m/s while its own sound speed is lower — the mismatch this dataset is built to estimate and correct.*
29
 
30
  ## Dataset Description
31
 
@@ -38,7 +38,7 @@ The source data are available from Figshare:
38
 
39
  The original Figshare releases were published under Apache 2.0; this converted release is CC BY 4.0.
40
 
41
- The converted dataset is hosted at [nvidia/OpenH-RF/stanford-murine](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/stanford-murine).
42
 
43
  ## Dataset Contributor(s)
44
 
@@ -109,13 +109,13 @@ The acquisitions can be processed with the `pipeline_multifocal.yaml`, `pipeline
109
 
110
  ```bash
111
  zea process \
112
- --dataset hf://nvidia/OpenH-RF/stanford-murine/data/RatExperiments/VerasonicsAcq/Rat3/ExposedLiver/DATA_Tracks_20190319_115804.hdf5 \
113
- --config hf://nvidia/OpenH-RF/stanford-murine/pipeline_synthetic_aperture.yaml \
114
  --track synthetic_aperture \
115
  --n-frames 1
116
  ```
117
 
118
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/stanford-murine/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF). It reconstructs the first frame of every track in `ZEA_FILE` with the same pipelines and writes one image per track to `assets/`. On top of the YAML, the script inserts a baseband FIR low-pass after demodulation, with its cutoff at half the probe bandwidth (4.0 MHz for L12-3v, 3.0 MHz for L12-5, 1.3 MHz for C5-2v). The cutoff depends on the probe, so it is not part of the pipeline YAMLs and `zea process` runs without it; the difference is small on the rat acquisitions and clearly visible at depth on the phantoms.
119
 
120
  ## Dataset Format
121
 
@@ -141,7 +141,7 @@ Reconstructed B-mode images and segmentation masks are not stored in the convert
141
 
142
  ## Dataset Quantification
143
 
144
- **Current OpenH-RF release:** 245 HDF5 files; 328.99 GB (328,985,804,800 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
145
 
146
  The original four-file demo (not the complete HF release summarized above) contains four HDF5 acquisition bundles: one Rat9 bundle and one phantom bundle for each of C5-2v, L12-3v, and L12-5. Each bundle has three sequence tracks, and each track retains every frame in its source MAT file. That demo has 12 tracks and 64 frames and occupies approximately 5.5 GiB; HDF5 writer and compression versions may change the exact byte count.
147
 
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - beamforming
13
  - sound-speed-estimation
14
  - aberration-correction
 
25
 
26
  ![B-mode reconstructions of a rat liver and the ATS 549 phantom](assets/hero.png)
27
 
28
+ *Frame 0 reconstructed with `reconstruct.py` (L12-3v, 60 dB). Top: the exposed liver of [Rat3](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/stanford-murine/data/RatExperiments/VerasonicsAcq/Rat3/ExposedLiver/DATA_Tracks_20190319_115804.hdf5), `multifocal` track. Bottom: the ATS 549 phantom's [lesions](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/stanford-murine/data/SoSExperiments/august13_2020/L12_3v/ATS_phantom/lesion/DATA_Tracks_20200813_164505.hdf5) and [point targets](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/stanford-murine/data/SoSExperiments/august13_2020/L12_3v/ATS_phantom/point_target/DATA_Tracks_20200813_164745.hdf5), `hadamard` track. The point targets curve into arcs because the phantom is beamformed at 1540 m/s while its own sound speed is lower — the mismatch this dataset is built to estimate and correct.*
29
 
30
  ## Dataset Description
31
 
 
38
 
39
  The original Figshare releases were published under Apache 2.0; this converted release is CC BY 4.0.
40
 
41
+ The converted dataset is hosted at [nvidia/Open-H-RF/stanford-murine](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/stanford-murine).
42
 
43
  ## Dataset Contributor(s)
44
 
 
109
 
110
  ```bash
111
  zea process \
112
+ --dataset hf://nvidia/Open-H-RF/stanford-murine/data/RatExperiments/VerasonicsAcq/Rat3/ExposedLiver/DATA_Tracks_20190319_115804.hdf5 \
113
+ --config hf://nvidia/Open-H-RF/stanford-murine/pipeline_synthetic_aperture.yaml \
114
  --track synthetic_aperture \
115
  --n-frames 1
116
  ```
117
 
118
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/stanford-murine/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF). It reconstructs the first frame of every track in `ZEA_FILE` with the same pipelines and writes one image per track to `assets/`. On top of the YAML, the script inserts a baseband FIR low-pass after demodulation, with its cutoff at half the probe bandwidth (4.0 MHz for L12-3v, 3.0 MHz for L12-5, 1.3 MHz for C5-2v). The cutoff depends on the probe, so it is not part of the pipeline YAMLs and `zea process` runs without it; the difference is small on the rat acquisitions and clearly visible at depth on the phantoms.
119
 
120
  ## Dataset Format
121
 
 
141
 
142
  ## Dataset Quantification
143
 
144
+ **Current Open-H-RF release:** 245 HDF5 files; 328.99 GB (328,985,804,800 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
145
 
146
  The original four-file demo (not the complete HF release summarized above) contains four HDF5 acquisition bundles: one Rat9 bundle and one phantom bundle for each of C5-2v, L12-3v, and L12-5. Each bundle has three sequence tracks, and each track retains every frame in its source MAT file. That demo has 12 tracks and 64 frames and occupies approximately 5.5 GiB; HDF5 writer and compression versions may change the exact byte count.
147
 
strasbourg-basel/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - tracked-ultrasound
12
  - robot-tracked
13
  - probe-pose
@@ -29,7 +29,7 @@ size_categories:
29
  <img src="assets/reference_bmode.png" alt="BoneSRF B-mode of phantom 2, whole-bone sweep" width="200">
30
  </p>
31
 
32
- *B-mode of a fractured-femur phantom, frame 45 of [`data/phantom2_wholebone.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/strasbourg-basel/BoneSRF/data/phantom2_wholebone.hdf5), beamformed from the recovered channel data.*
33
 
34
  ## Dataset Description
35
 
@@ -37,7 +37,7 @@ size_categories:
37
  <img src="assets/bonesrf_logo.png" alt="BoneSRF" width="200">
38
  </p>
39
 
40
- **BoneSRF** (Bone Surface Reflection) is an ultrasound channel-data dataset for bone-surface and fracture-reflection research. It contains three 3D-printed, fractured femur phantoms, scanned with a handheld point-of-care probe, inverted back to pre-beamformed RF and packaged in the OpenH-RF `zea` format.
41
 
42
  Each phantom was swept three times (`distal`, `proximal`, `wholebone`), giving nine `zea` HDF5 files. Every scan is robot-tracked: the probe was mounted on a robotic arm and its pose recorded separately. Each file also carries that phantom's CT scan and multi-label segmentation.
43
 
@@ -49,7 +49,7 @@ This is phantom data, not simulated, clinical or in-vivo. It is intended for ful
49
 
50
  1. **Acquisition.** Each phantom was scanned with a Clarius L20HD3 linear array, producing the probe's own beamformed RF output. This is the physically acquired data, not simulated.
51
  2. **Inversion.** The beamformed RF is inverted back into pre-beamformed, per-element channel data with [`das-inverse` (`clarius` branch)](https://github.com/sankethvedula/das-inverse/tree/clarius), a CGLS solver over a `zea.inverse.DASOperator` forward model of the probe's focused, walking-sub-aperture transmit sequence (`invert_clarius_beamformed.py`). The result is not sensor-captured, but numerically consistent with the real beamformed acquisition it was inverted from.
52
- 3. **Packaging.** The inverted channel data, transmit-sequence metadata, probe geometry, per-frame probe pose, and the phantom's CT + segmentation are written out as one `zea` HDF5 file per scan, matching the OpenH-RF format spec.
53
 
54
  ### Probe tracking
55
 
@@ -91,7 +91,7 @@ The CT and segmentation data inside the files are released under the same CC BY
91
 
92
  ## Processing the Dataset
93
 
94
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/strasbourg-basel/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
95
 
96
  The script loads the saved `zea.Pipeline` from `pipeline.yaml`, runs it on one frame of one scan, and writes `assets/<scan>.png`.
97
 
@@ -105,7 +105,7 @@ The constants at the top of the script select what is reconstructed:
105
  These values reconstruct `phantom2_wholebone` at its reference frame (45) on the CPU:
106
 
107
  ```python
108
- SCAN = "hf://nvidia/OpenH-RF/strasbourg-basel/BoneSRF/data/phantom2_wholebone.hdf5"
109
  FRAME = None
110
  DEVICE = "cpu"
111
  ```
@@ -226,7 +226,7 @@ The CT is reference imaging of the physical phantom in scanner (LPS) space. It i
226
 
227
  ## Dataset Quantification
228
 
229
- **Current OpenH-RF release:** 9 HDF5 files; 200.75 GB (200,745,025,536 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
230
 
231
  Nine acquisitions, one continuous sweep each; 1,427 frames in total. No train / val / test split (each file is a single reference acquisition). Every scan has one tracked probe pose per frame.
232
 
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - tracked-ultrasound
12
  - robot-tracked
13
  - probe-pose
 
29
  <img src="assets/reference_bmode.png" alt="BoneSRF B-mode of phantom 2, whole-bone sweep" width="200">
30
  </p>
31
 
32
+ *B-mode of a fractured-femur phantom, frame 45 of [`data/phantom2_wholebone.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/strasbourg-basel/BoneSRF/data/phantom2_wholebone.hdf5), beamformed from the recovered channel data.*
33
 
34
  ## Dataset Description
35
 
 
37
  <img src="assets/bonesrf_logo.png" alt="BoneSRF" width="200">
38
  </p>
39
 
40
+ **BoneSRF** (Bone Surface Reflection) is an ultrasound channel-data dataset for bone-surface and fracture-reflection research. It contains three 3D-printed, fractured femur phantoms, scanned with a handheld point-of-care probe, inverted back to pre-beamformed RF and packaged in the Open-H-RF `zea` format.
41
 
42
  Each phantom was swept three times (`distal`, `proximal`, `wholebone`), giving nine `zea` HDF5 files. Every scan is robot-tracked: the probe was mounted on a robotic arm and its pose recorded separately. Each file also carries that phantom's CT scan and multi-label segmentation.
43
 
 
49
 
50
  1. **Acquisition.** Each phantom was scanned with a Clarius L20HD3 linear array, producing the probe's own beamformed RF output. This is the physically acquired data, not simulated.
51
  2. **Inversion.** The beamformed RF is inverted back into pre-beamformed, per-element channel data with [`das-inverse` (`clarius` branch)](https://github.com/sankethvedula/das-inverse/tree/clarius), a CGLS solver over a `zea.inverse.DASOperator` forward model of the probe's focused, walking-sub-aperture transmit sequence (`invert_clarius_beamformed.py`). The result is not sensor-captured, but numerically consistent with the real beamformed acquisition it was inverted from.
52
+ 3. **Packaging.** The inverted channel data, transmit-sequence metadata, probe geometry, per-frame probe pose, and the phantom's CT + segmentation are written out as one `zea` HDF5 file per scan, matching the Open-H-RF format spec.
53
 
54
  ### Probe tracking
55
 
 
91
 
92
  ## Processing the Dataset
93
 
94
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/strasbourg-basel/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
95
 
96
  The script loads the saved `zea.Pipeline` from `pipeline.yaml`, runs it on one frame of one scan, and writes `assets/<scan>.png`.
97
 
 
105
  These values reconstruct `phantom2_wholebone` at its reference frame (45) on the CPU:
106
 
107
  ```python
108
+ SCAN = "hf://nvidia/Open-H-RF/strasbourg-basel/BoneSRF/data/phantom2_wholebone.hdf5"
109
  FRAME = None
110
  DEVICE = "cpu"
111
  ```
 
226
 
227
  ## Dataset Quantification
228
 
229
+ **Current Open-H-RF release:** 9 HDF5 files; 200.75 GB (200,745,025,536 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
230
 
231
  Nine acquisitions, one continuous sweep each; 1,427 frames in total. No train / val / test split (each file is a single reference acquisition). Every scan has one tracked probe pose per frame.
232
 
technion/bladder/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - beamforming
12
  - bladder
13
  - 3d
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Transverse suprapubic view of the bladder, one 10-frame cine loop](assets/cine.gif)
23
 
24
- *Transverse suprapubic view: one cine loop (10 frames) from [`data/a1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/bladder/data/a1.hdf5).*
25
 
26
  ## Dataset Description
27
 
@@ -37,7 +37,7 @@ Real, **in-vivo human** pre-beamformed ultrasound **channel data** for bladder i
37
 
38
  ## Dataset Creation Date
39
 
40
- Source data 2018; converted to the OpenH-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
@@ -61,12 +61,12 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
61
 
62
  ```bash
63
  zea process \
64
- --dataset hf://nvidia/OpenH-RF/technion/bladder/data/a1.hdf5 \
65
- --config hf://nvidia/OpenH-RF/technion/bladder/pipeline.yaml \
66
  --n-frames 10
67
  ```
68
 
69
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/bladder/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ zea file format, one HDF5 file per sweep (`data/<subject>.hdf5`, e.g. `a1.hdf5`,
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 14 HDF5 files; 83.71 GB (83,713,785,856 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / sweeps / subjects:** 1,508 frames · 14 sweeps · 7 subjects.
82
  - **Train / val / test split:** N/A (contributor to define).
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - beamforming
12
  - bladder
13
  - 3d
 
21
 
22
  ![Transverse suprapubic view of the bladder, one 10-frame cine loop](assets/cine.gif)
23
 
24
+ *Transverse suprapubic view: one cine loop (10 frames) from [`data/a1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/technion/bladder/data/a1.hdf5).*
25
 
26
  ## Dataset Description
27
 
 
37
 
38
  ## Dataset Creation Date
39
 
40
+ Source data 2018; converted to the Open-H-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
 
61
 
62
  ```bash
63
  zea process \
64
+ --dataset hf://nvidia/Open-H-RF/technion/bladder/data/a1.hdf5 \
65
+ --config hf://nvidia/Open-H-RF/technion/bladder/pipeline.yaml \
66
  --n-frames 10
67
  ```
68
 
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/technion/bladder/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 14 HDF5 files; 83.71 GB (83,713,785,856 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / sweeps / subjects:** 1,508 frames · 14 sweeps · 7 subjects.
82
  - **Train / val / test split:** N/A (contributor to define).
technion/cardiac/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - beamforming
12
  - cardiac
13
  - 3d
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Apical four-chamber view, one 32-frame cardiac cine loop](assets/cine.gif)
23
 
24
- *Apical four-chamber view: one cine loop (32 frames) from [`data/c1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/cardiac/data/c1.hdf5).*
25
 
26
  ## Dataset Description
27
 
@@ -37,7 +37,7 @@ Real, **in-vivo human** pre-beamformed ultrasound **channel data** for cardiac i
37
 
38
  ## Dataset Creation Date
39
 
40
- Acquired 2018; converted to the OpenH-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
@@ -61,12 +61,12 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
61
 
62
  ```bash
63
  zea process \
64
- --dataset hf://nvidia/OpenH-RF/technion/cardiac/data/c1.hdf5 \
65
- --config hf://nvidia/OpenH-RF/technion/cardiac/pipeline.yaml \
66
  --n-frames 32
67
  ```
68
 
69
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/cardiac/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ zea file format, one HDF5 file per cine loop (`data/<subject><clip>.hdf5`, e.g.
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 25 HDF5 files; 14.99 GB (14,992,998,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / cines / subjects:** 777 frames · 25 cine loops · 6 subjects (a–f).
82
  - **Train / val / test split:** N/A (contributor to define; the `f2` patient set is a natural held-out cine).
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - beamforming
12
  - cardiac
13
  - 3d
 
21
 
22
  ![Apical four-chamber view, one 32-frame cardiac cine loop](assets/cine.gif)
23
 
24
+ *Apical four-chamber view: one cine loop (32 frames) from [`data/c1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/technion/cardiac/data/c1.hdf5).*
25
 
26
  ## Dataset Description
27
 
 
37
 
38
  ## Dataset Creation Date
39
 
40
+ Acquired 2018; converted to the Open-H-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
 
61
 
62
  ```bash
63
  zea process \
64
+ --dataset hf://nvidia/Open-H-RF/technion/cardiac/data/c1.hdf5 \
65
+ --config hf://nvidia/Open-H-RF/technion/cardiac/pipeline.yaml \
66
  --n-frames 32
67
  ```
68
 
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/technion/cardiac/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 25 HDF5 files; 14.99 GB (14,992,998,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / cines / subjects:** 777 frames · 25 cine loops · 6 subjects (a–f).
82
  - **Train / val / test split:** N/A (contributor to define; the `f2` patient set is a natural held-out cine).
technion/phantom/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - beamforming
12
  - phantom
13
  - 3d
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  ![Tissue-mimicking phantom with point targets and an anechoic cyst](assets/bmode.png)
23
 
24
- *Frame 6 of [`data/ph.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/phantom/data/ph.hdf5), reconstructed by `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
@@ -37,7 +37,7 @@ Pre-beamformed ultrasound **channel data** from a tissue-mimicking phantom, acqu
37
 
38
  ## Dataset Creation Date
39
 
40
- Source data 2018; converted to the OpenH-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
@@ -61,12 +61,12 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
61
 
62
  ```bash
63
  zea process \
64
- --dataset hf://nvidia/OpenH-RF/technion/phantom/data/ph.hdf5 \
65
- --config hf://nvidia/OpenH-RF/technion/phantom/pipeline.yaml \
66
  --n-frames 1
67
  ```
68
 
69
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/phantom/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
@@ -76,7 +76,7 @@ zea file format, a single HDF5 file `data/ph.hdf5`. Source complex samples repac
76
 
77
  ## Dataset Quantification
78
 
79
- **Current OpenH-RF release:** 1 HDF5 file; 659.95 MB (659,947,520 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / acquisitions:** 12 frames · 1 acquisition.
82
  - **Stored HDF5 size:** 659.95 MB (659,947,520 bytes).
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - beamforming
12
  - phantom
13
  - 3d
 
21
 
22
  ![Tissue-mimicking phantom with point targets and an anechoic cyst](assets/bmode.png)
23
 
24
+ *Frame 6 of [`data/ph.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/technion/phantom/data/ph.hdf5), reconstructed by `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
 
37
 
38
  ## Dataset Creation Date
39
 
40
+ Source data 2018; converted to the Open-H-RF (zea) format 07/16/2026.
41
 
42
  ## License / Terms of Use
43
 
 
61
 
62
  ```bash
63
  zea process \
64
+ --dataset hf://nvidia/Open-H-RF/technion/phantom/data/ph.hdf5 \
65
+ --config hf://nvidia/Open-H-RF/technion/phantom/pipeline.yaml \
66
  --n-frames 1
67
  ```
68
 
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/technion/phantom/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
70
 
71
  ## Dataset Format
72
 
 
76
 
77
  ## Dataset Quantification
78
 
79
+ **Current Open-H-RF release:** 1 HDF5 file; 659.95 MB (659,947,520 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / acquisitions:** 12 frames · 1 acquisition.
82
  - **Stored HDF5 size:** 659.95 MB (659,947,520 bytes).
tel-aviv/README.md CHANGED
@@ -3,14 +3,14 @@ name: tel-aviv
3
  license: cc-by-4.0
4
  pretty_name: Ilovitsh Lab Mice Tumors
5
  task_categories: [image-segmentation]
6
- tags: [ultrasound, rf, openh-rf]
7
  ---
8
 
9
  # Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
10
 
11
  ![Reconstructed cineloop from 01-scan-3.hdf5](assets/01-scan-3.gif)
12
 
13
- *Cine loop of the rotational sweep through a mouse tumor, [`mouse_tumor/seg/01-scan-3.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tel-aviv/mouse_tumor/seg/01-scan-3.hdf5), reconstructed from the raw channel data with `mouse_tumor/pipeline.yaml`.*
14
 
15
  ## Dataset Description
16
 
@@ -45,7 +45,7 @@ Segmentation of tumors in mice and water-bead phantoms.
45
 
46
  ## Processing the Dataset
47
 
48
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tel-aviv/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definitions in `mouse_tumor/` and `phantom/` and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub and overlays the stored segmentation on the reconstructed B-mode.
49
 
50
  ## Dataset Format
51
 
@@ -53,7 +53,7 @@ The acquisitions can be processed with the `reconstruct.py` [script](https://git
53
 
54
  ## Dataset Quantification
55
 
56
- **Current OpenH-RF release:** 22 HDF5 files; 4.36 GB (4,357,947,392 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
57
 
58
  - **Samples / frames:** 22 total `.hdf5` acquisitions. Each acquisition contains 144 angular frames covering a 180° rotation (1.25° increments) of 5 plane waves.
59
  - **Train / val / test split:** N/A
 
3
  license: cc-by-4.0
4
  pretty_name: Ilovitsh Lab Mice Tumors
5
  task_categories: [image-segmentation]
6
+ tags: [ultrasound, rf, open-h-rf]
7
  ---
8
 
9
  # Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
10
 
11
  ![Reconstructed cineloop from 01-scan-3.hdf5](assets/01-scan-3.gif)
12
 
13
+ *Cine loop of the rotational sweep through a mouse tumor, [`mouse_tumor/seg/01-scan-3.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tel-aviv/mouse_tumor/seg/01-scan-3.hdf5), reconstructed from the raw channel data with `mouse_tumor/pipeline.yaml`.*
14
 
15
  ## Dataset Description
16
 
 
45
 
46
  ## Processing the Dataset
47
 
48
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/tel-aviv/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definitions in `mouse_tumor/` and `phantom/` and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub and overlays the stored segmentation on the reconstructed B-mode.
49
 
50
  ## Dataset Format
51
 
 
53
 
54
  ## Dataset Quantification
55
 
56
+ **Current Open-H-RF release:** 22 HDF5 files; 4.36 GB (4,357,947,392 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
57
 
58
  - **Samples / frames:** 22 total `.hdf5` acquisitions. Each acquisition contains 144 angular frames covering a 180° rotation (1.25° increments) of 5 plane waves.
59
  - **Train / val / test split:** N/A
tue-aaa/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - beamforming
12
  - motion-estimation
13
  - abdominal-aortic-aneurysm
@@ -20,7 +20,7 @@ language:
20
 
21
  ![Reconstructed cineloop from AAA_subject11.hdf5](assets/AAA_subject11.gif)
22
 
23
- *Cine loop of [`data/AAA_subject11.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-aaa/data/AAA_subject11.hdf5), reconstructed from the raw channel data.*
24
 
25
  ## Dataset Description
26
 
@@ -58,11 +58,11 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
58
 
59
  ```bash
60
  zea process \
61
- --dataset hf://nvidia/OpenH-RF/tue-aaa/data/AAA_subject11.hdf5 \
62
- --config hf://nvidia/OpenH-RF/tue-aaa/pipeline.yaml
63
  ```
64
 
65
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tue-aaa/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
66
 
67
  ## Dataset Format
68
 
@@ -72,7 +72,7 @@ zea file format. Subject metadata is stored under `metadata/subject` (`age`, `se
72
 
73
  ## Dataset Quantification
74
 
75
- **Current OpenH-RF release:** 15 HDF5 files; 53.08 GB (53,077,606,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
76
 
77
  - **Samples / frames:** 15 acquisitions (one HDF5 file each), 500 frames per acquisition — 7,500 frames total
78
  - **Stored HDF5 size:** 53.08 GB (53,077,606,400 bytes).
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - beamforming
12
  - motion-estimation
13
  - abdominal-aortic-aneurysm
 
20
 
21
  ![Reconstructed cineloop from AAA_subject11.hdf5](assets/AAA_subject11.gif)
22
 
23
+ *Cine loop of [`data/AAA_subject11.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-aaa/data/AAA_subject11.hdf5), reconstructed from the raw channel data.*
24
 
25
  ## Dataset Description
26
 
 
58
 
59
  ```bash
60
  zea process \
61
+ --dataset hf://nvidia/Open-H-RF/tue-aaa/data/AAA_subject11.hdf5 \
62
+ --config hf://nvidia/Open-H-RF/tue-aaa/pipeline.yaml
63
  ```
64
 
65
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/tue-aaa/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
66
 
67
  ## Dataset Format
68
 
 
72
 
73
  ## Dataset Quantification
74
 
75
+ **Current Open-H-RF release:** 15 HDF5 files; 53.08 GB (53,077,606,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
76
 
77
  - **Samples / frames:** 15 acquisitions (one HDF5 file each), 500 frames per acquisition — 7,500 frames total
78
  - **Stored HDF5 size:** 53.08 GB (53,077,606,400 bytes).
tue-cardiac/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - echocardiography
12
  - cardiac
13
  - plax
@@ -33,7 +33,7 @@ size_categories:
33
  </tr>
34
  </table>
35
 
36
- *Parasternal long-axis cine loops of four volunteers, pulse-inversion harmonic tracks: focused ([`subject-002`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-cardiac/data/subject-002.hdf5)), wide ([`subject-004`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-cardiac/data/subject-004.hdf5)), focused ([`subject-006`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-cardiac/data/subject-006.hdf5)) and wide ([`subject-009`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-cardiac/data/subject-009.hdf5)).*
37
 
38
  ## Dataset Description
39
 
@@ -95,7 +95,7 @@ The dataset must not be used as a clinically validated diagnostic product.
95
 
96
  ## Processing the Dataset
97
 
98
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tue-cardiac/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipelines/*.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
99
 
100
  Each file holds the eight transmit-encoding tracks. Set `ZEA_FILE`, `TRACK` and `FRAME` at the top of the script, together with the matching pipeline under `pipelines/` as `CONFIG` (`PIPELINE_FOR_TRACK` lists which track uses which; see also [Data Validation](#data-validation)). The image is written to `assets/`.
101
 
@@ -178,7 +178,7 @@ The source tensor order is preserved as `(n_frames, n_tx, n_ax, n_el, n_ch) = (1
178
 
179
  Suggested citation for the dataset:
180
 
181
- > Penninga, S. W., & van Sloun, R. J. G. (2026). *TU/e Cardiac RF Multi-Transmit* [Data set]. Eindhoven University of Technology, OpenH-RF.
182
 
183
  ```bibtex
184
  @misc{penninga_tue_cardiac_plax_2026,
@@ -186,13 +186,13 @@ Suggested citation for the dataset:
186
  author = {Penninga, Simon W. and van Sloun, Ruud J. G.},
187
  year = {2026},
188
  publisher = {Biomedical Diagnostics Lab, Eindhoven University of Technology},
189
- howpublished = {OpenH-RF dataset},
190
  }
191
  ```
192
 
193
  ## Dataset Quantification
194
 
195
- **Current OpenH-RF release:** 12 HDF5 files; 199.18 GB (199,180,025,844 bytes) stored; root `zea_version` **0.1.4**.
196
  - **Participants/files:** 12 distinct people represented by 12 HDF5 files.
197
  - **Tracks/acquisitions:** 8 tracks per file; 96 acquisitions total.
198
  - **Frames:** 100 per track; 9,600 frames total.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - echocardiography
12
  - cardiac
13
  - plax
 
33
  </tr>
34
  </table>
35
 
36
+ *Parasternal long-axis cine loops of four volunteers, pulse-inversion harmonic tracks: focused ([`subject-002`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-cardiac/data/subject-002.hdf5)), wide ([`subject-004`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-cardiac/data/subject-004.hdf5)), focused ([`subject-006`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-cardiac/data/subject-006.hdf5)) and wide ([`subject-009`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-cardiac/data/subject-009.hdf5)).*
37
 
38
  ## Dataset Description
39
 
 
95
 
96
  ## Processing the Dataset
97
 
98
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/tue-cardiac/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipelines/*.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
99
 
100
  Each file holds the eight transmit-encoding tracks. Set `ZEA_FILE`, `TRACK` and `FRAME` at the top of the script, together with the matching pipeline under `pipelines/` as `CONFIG` (`PIPELINE_FOR_TRACK` lists which track uses which; see also [Data Validation](#data-validation)). The image is written to `assets/`.
101
 
 
178
 
179
  Suggested citation for the dataset:
180
 
181
+ > Penninga, S. W., & van Sloun, R. J. G. (2026). *TU/e Cardiac RF Multi-Transmit* [Data set]. Eindhoven University of Technology, Open-H-RF.
182
 
183
  ```bibtex
184
  @misc{penninga_tue_cardiac_plax_2026,
 
186
  author = {Penninga, Simon W. and van Sloun, Ruud J. G.},
187
  year = {2026},
188
  publisher = {Biomedical Diagnostics Lab, Eindhoven University of Technology},
189
+ howpublished = {Open-H-RF dataset},
190
  }
191
  ```
192
 
193
  ## Dataset Quantification
194
 
195
+ **Current Open-H-RF release:** 12 HDF5 files; 199.18 GB (199,180,025,844 bytes) stored; root `zea_version` **0.1.4**.
196
  - **Participants/files:** 12 distinct people represented by 12 HDF5 files.
197
  - **Tracks/acquisitions:** 8 tracks per file; 96 acquisitions total.
198
  - **Frames:** 100 per track; 9,600 frames total.
tue-carotid/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
8
  tags:
9
  - ultrasound
10
  - rf
11
- - openh-rf
12
  - carotid
13
  - in-vivo
14
  language:
@@ -20,7 +20,7 @@ language:
20
 
21
  ![Longitudinal view of a carotid bifurcation](assets/5_long_bifur_R_0000.gif)
22
 
23
- *One cardiac cycle of a longitudinal bifurcation scan, [`data/5_long_bifur_R_0000.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-carotid/data/5_long_bifur_R_0000.hdf5).*
24
 
25
 
26
  ## Dataset Description
@@ -76,11 +76,11 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
76
 
77
  ```bash
78
  zea process \
79
- --dataset hf://nvidia/OpenH-RF/tue-carotid/data/5_long_bifur_R_0000.hdf5 \
80
- --config hf://nvidia/OpenH-RF/tue-carotid/pipeline.yaml
81
  ```
82
 
83
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tue-carotid/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
84
 
85
  ## Dataset Format
86
 
@@ -88,7 +88,7 @@ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open
88
 
89
  ## Dataset Quantification
90
 
91
- **OpenH-RF release:** 80 HDF5 files; 435.40 GB (435,403,030,528 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
92
 
93
  - **Samples / frames / acquisitions:** 80 acquisitions (one HDF5 file each) from 10 subjects, 150 frames per acquisition — 12,000 frames total.
94
  - **Transmit events per frame:** 149 — 128 focused lines interleaved with 21 plane waves.
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - carotid
13
  - in-vivo
14
  language:
 
20
 
21
  ![Longitudinal view of a carotid bifurcation](assets/5_long_bifur_R_0000.gif)
22
 
23
+ *One cardiac cycle of a longitudinal bifurcation scan, [`data/5_long_bifur_R_0000.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tue-carotid/data/5_long_bifur_R_0000.hdf5).*
24
 
25
 
26
  ## Dataset Description
 
76
 
77
  ```bash
78
  zea process \
79
+ --dataset hf://nvidia/Open-H-RF/tue-carotid/data/5_long_bifur_R_0000.hdf5 \
80
+ --config hf://nvidia/Open-H-RF/tue-carotid/pipeline.yaml
81
  ```
82
 
83
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/tue-carotid/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
84
 
85
  ## Dataset Format
86
 
 
88
 
89
  ## Dataset Quantification
90
 
91
+ **Open-H-RF release:** 80 HDF5 files; 435.40 GB (435,403,030,528 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
92
 
93
  - **Samples / frames / acquisitions:** 80 acquisitions (one HDF5 file each) from 10 subjects, 150 frames per acquisition — 12,000 frames total.
94
  - **Transmit events per frame:** 149 — 128 focused lines interleaved with 21 plane waves.
tumunich/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - 3d
12
  - robotic
13
  - freehand
@@ -31,7 +31,7 @@ size_categories:
31
  </tr>
32
  </table>
33
 
34
- *Acquisition setup (left), a single-frame reconstruction (middle) and a panoramic reconstruction compounded along the robot-tracked sweep (right) of the CIRS 054GS phantom, [`data/cirs_phantom/synth_apert_sweep_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tumunich/data/cirs_phantom/synth_apert_sweep_1.hdf5).*
35
 
36
  ## Dataset Description
37
 
@@ -72,9 +72,9 @@ Primary task: **robotic tracked ultrasound acquisition** — compounding the per
72
 
73
  ## Processing the Dataset
74
 
75
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tumunich/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
76
 
77
- `reconstruct.py` beamforms a single frame and compares it to the stored Verasonics B-mode; [`reconstruct_panorama.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/tumunich/reconstruct_panorama.py), with `pipeline_panorama.yaml`, compounds a tracked sweep into the panoramic reconstruction shown above, using the per-frame robot poses.
78
 
79
  ## Dataset Format
80
 
@@ -88,7 +88,7 @@ Zero-valued rows pad the top of each stored frame so the image starts at the tra
88
 
89
  ## Dataset Quantification
90
 
91
- **Current OpenH-RF release:** 11 HDF5 files; 62.25 GB (62,245,175,296 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
92
 
93
  - **Phantoms:** 3 (vascular access arm phantom, CIRS 054GS, CIRS 074 thyroid)
94
  - **Files:** 11 zea HDF5 files across 3 sub-dataset folders
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - 3d
12
  - robotic
13
  - freehand
 
31
  </tr>
32
  </table>
33
 
34
+ *Acquisition setup (left), a single-frame reconstruction (middle) and a panoramic reconstruction compounded along the robot-tracked sweep (right) of the CIRS 054GS phantom, [`data/cirs_phantom/synth_apert_sweep_1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/tumunich/data/cirs_phantom/synth_apert_sweep_1.hdf5).*
35
 
36
  ## Dataset Description
37
 
 
72
 
73
  ## Processing the Dataset
74
 
75
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/tumunich/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
76
 
77
+ `reconstruct.py` beamforms a single frame and compares it to the stored Verasonics B-mode; [`reconstruct_panorama.py`](https://github.com/open-h/Open-H-RF/blob/main/datasets/tumunich/reconstruct_panorama.py), with `pipeline_panorama.yaml`, compounds a tracked sweep into the panoramic reconstruction shown above, using the per-frame robot poses.
78
 
79
  ## Dataset Format
80
 
 
88
 
89
  ## Dataset Quantification
90
 
91
+ **Current Open-H-RF release:** 11 HDF5 files; 62.25 GB (62,245,175,296 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
92
 
93
  - **Phantoms:** 3 (vascular access arm phantom, CIRS 054GS, CIRS 074 thyroid)
94
  - **Files:** 11 zea HDF5 files across 3 sub-dataset folders
twente-microbubblesim/README.md CHANGED
@@ -9,7 +9,7 @@ tags:
9
  - rf
10
  - microbubbles
11
  - synthetic-data
12
- - openh-rf
13
  language:
14
  - en
15
  size_categories:
@@ -56,7 +56,7 @@ The dataset is intended for studying the effect of transmit waveforms on deep-le
56
 
57
  ## Processing the Dataset
58
 
59
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/twente-microbubblesim/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the pipeline definitions in `pipeline/` and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
60
 
61
  Every pulse track has its own verified pipeline file, `pipeline/pipeline_track_<index>_<label>.yaml`, all defining the same chain:
62
 
@@ -66,8 +66,8 @@ Each pipeline's `parameters:` block carries that pulse's beamforming peak-time r
66
 
67
  ```bash
68
  zea process \
69
- --dataset hf://nvidia/OpenH-RF/twente-microbubblesim/data/Monodispers/RFDATA00002.hdf5 \
70
- --config hf://nvidia/OpenH-RF/twente-microbubblesim/pipeline/pipeline_track_6_REF.yaml \
71
  --track 6
72
  ```
73
 
@@ -110,7 +110,7 @@ The meanings and waveform values below are from Table I of Zorgdrager et al. (20
110
 
111
  ## Dataset Quantification
112
 
113
- **Current OpenH-RF release:** 500 HDF5 files; 17.03 GB (17,029,267,456 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
114
 
115
  - **Acquisition files:** 500 files, each with 12 one-frame pulse tracks (6,000 track acquisitions total).
116
  - **Organization:** Two bubble populations × 250 files × 12 pulse tracks.
 
9
  - rf
10
  - microbubbles
11
  - synthetic-data
12
+ - open-h-rf
13
  language:
14
  - en
15
  size_categories:
 
56
 
57
  ## Processing the Dataset
58
 
59
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/twente-microbubblesim/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the pipeline definitions in `pipeline/` and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
60
 
61
  Every pulse track has its own verified pipeline file, `pipeline/pipeline_track_<index>_<label>.yaml`, all defining the same chain:
62
 
 
66
 
67
  ```bash
68
  zea process \
69
+ --dataset hf://nvidia/Open-H-RF/twente-microbubblesim/data/Monodispers/RFDATA00002.hdf5 \
70
+ --config hf://nvidia/Open-H-RF/twente-microbubblesim/pipeline/pipeline_track_6_REF.yaml \
71
  --track 6
72
  ```
73
 
 
110
 
111
  ## Dataset Quantification
112
 
113
+ **Current Open-H-RF release:** 500 HDF5 files; 17.03 GB (17,029,267,456 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
114
 
115
  - **Acquisition files:** 500 files, each with 12 one-frame pulse tracks (6,000 track acquisitions total).
116
  - **Organization:** Two bubble populations × 250 files × 12 pulse tracks.
twente-vortexflow/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
8
  tags:
9
  - ultrasound
10
  - rf
11
- - openh-rf
12
  - flow
13
  - phantom
14
  - blood-flow
@@ -22,7 +22,7 @@ size_categories:
22
 
23
  ![Optical camera view beside the B-mode reconstruction of a von Karman vortex street](assets/vortex_street.gif)
24
 
25
- *The Photron high-speed camera view (left) and the B-mode reconstruction (right) of [`data/AcqData_PVoltage80_TVoltage3.4.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/twente-vortexflow/data/AcqData_PVoltage80_TVoltage3.4.hdf5). Both come from `track_0`, frame for frame, so the optical and acoustic views show the same instant of the vortex street.*
26
 
27
  ## Dataset Description
28
 
@@ -91,7 +91,7 @@ Suitable for research in:
91
 
92
  ## Processing the Dataset
93
 
94
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/twente-vortexflow/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the pipeline definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
95
 
96
  `ZEA_FILE` and `FRAME` at the top of the script select the acquisition and frame; each track is reconstructed with its own pipeline (`pipeline_short_imaging_pulse.yaml`, `pipeline_chirp.yaml`).
97
 
@@ -114,7 +114,7 @@ No pre-processing (demodulation, decimation, filtering) has been applied before
114
 
115
  ## Dataset Quantification
116
 
117
- **Current OpenH-RF release:** 6 HDF5 files; 9.09 GB (9,088,991,232 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
118
 
119
  **Table 3. Acquisition settings.**
120
 
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - flow
13
  - phantom
14
  - blood-flow
 
22
 
23
  ![Optical camera view beside the B-mode reconstruction of a von Karman vortex street](assets/vortex_street.gif)
24
 
25
+ *The Photron high-speed camera view (left) and the B-mode reconstruction (right) of [`data/AcqData_PVoltage80_TVoltage3.4.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/twente-vortexflow/data/AcqData_PVoltage80_TVoltage3.4.hdf5). Both come from `track_0`, frame for frame, so the optical and acoustic views show the same instant of the vortex street.*
26
 
27
  ## Dataset Description
28
 
 
91
 
92
  ## Processing the Dataset
93
 
94
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/twente-vortexflow/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the pipeline definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
95
 
96
  `ZEA_FILE` and `FRAME` at the top of the script select the acquisition and frame; each track is reconstructed with its own pipeline (`pipeline_short_imaging_pulse.yaml`, `pipeline_chirp.yaml`).
97
 
 
114
 
115
  ## Dataset Quantification
116
 
117
+ **Current Open-H-RF release:** 6 HDF5 files; 9.09 GB (9,088,991,232 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
118
 
119
  **Table 3. Acquisition settings.**
120
 
ubc/module_A/README.md CHANGED
@@ -5,7 +5,7 @@ license: cc-by-4.0
5
  task_categories:
6
  - image-to-image
7
  tags:
8
- - openh-rf
9
  - zea
10
  - ultrasound
11
  - rf
@@ -23,7 +23,7 @@ size_categories:
23
 
24
  ![Example reconstruction](./assets/module_A.png)
25
 
26
- *Scan-converted scanline B-mode of a CIRS 039 liver fibrosis phantom, reconstructed from the synthetic channel data in [`acquisitions/`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/ubc/module_A/acquisitions).*
27
 
28
  ## Dataset Description
29
 
@@ -96,13 +96,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
96
 
97
  ```bash
98
  zea process \
99
- --dataset hf://nvidia/OpenH-RF/ubc/module_A/acquisitions/case_1.83/ubc_swave_cirs_1.83_p10_f13.hdf5 \
100
- --config hf://nvidia/OpenH-RF/ubc/module_A/pipeline.yaml
101
  ```
102
 
103
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/ubc/module_A/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
104
 
105
- `reconstruct.py` reconstructs one frame (default `case_1.83/ubc_swave_cirs_1.83_p10_f13.hdf5`); [`reconstruct_multiframe.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/ubc/module_A/reconstruct_multiframe.py) reconstructs the temporal sequence at one motor plane (`CASE_ID`, `PLANE`, `N_FRAMES`) into an animated GIF.
106
 
107
  ## Dataset Format
108
 
 
5
  task_categories:
6
  - image-to-image
7
  tags:
8
+ - open-h-rf
9
  - zea
10
  - ultrasound
11
  - rf
 
23
 
24
  ![Example reconstruction](./assets/module_A.png)
25
 
26
+ *Scan-converted scanline B-mode of a CIRS 039 liver fibrosis phantom, reconstructed from the synthetic channel data in [`acquisitions/`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/ubc/module_A/acquisitions).*
27
 
28
  ## Dataset Description
29
 
 
96
 
97
  ```bash
98
  zea process \
99
+ --dataset hf://nvidia/Open-H-RF/ubc/module_A/acquisitions/case_1.83/ubc_swave_cirs_1.83_p10_f13.hdf5 \
100
+ --config hf://nvidia/Open-H-RF/ubc/module_A/pipeline.yaml
101
  ```
102
 
103
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/ubc/module_A/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
104
 
105
+ `reconstruct.py` reconstructs one frame (default `case_1.83/ubc_swave_cirs_1.83_p10_f13.hdf5`); [`reconstruct_multiframe.py`](https://github.com/open-h/Open-H-RF/blob/main/datasets/ubc/module_A/reconstruct_multiframe.py) reconstructs the temporal sequence at one motor plane (`CASE_ID`, `PLANE`, `N_FRAMES`) into an animated GIF.
106
 
107
  ## Dataset Format
108
 
ubc/module_C/README.md CHANGED
@@ -15,7 +15,7 @@ tags:
15
  - multimodal
16
  - timeseries
17
  - video
18
- - openh-rf
19
  language:
20
  - en
21
  size_categories:
@@ -26,7 +26,7 @@ size_categories:
26
 
27
  ![Example reconstruction](./assets/module_C.png)
28
 
29
- *Scan-converted B-mode of the Kyoto Kagaku SPACE FAN-ST fetal phantom, reconstructed from the synthetic channel data in [`acquisitions/`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/ubc/module_C/acquisitions).*
30
 
31
  ## Dataset Description
32
 
@@ -101,11 +101,11 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
101
 
102
  ```bash
103
  zea process \
104
- --dataset hf://nvidia/OpenH-RF/ubc/module_C/acquisitions/session_01/session_01_f1306.hdf5 \
105
- --config hf://nvidia/OpenH-RF/ubc/module_C/pipeline.yaml
106
  ```
107
 
108
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/ubc/module_C/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
109
 
110
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick a frame (default `session_01/session_01_f1306.hdf5`).
111
 
@@ -232,4 +232,4 @@ Room-camera recordings originally captured people. Released RGB/IR crops retain
232
 
233
  The HDF5 `metadata/credit` field carries the following attribution:
234
 
235
- > University of British Columbia OpenH-RF contributors (2026). *UBC Module C: Synthetic Channel Proxy and Multimodal Fetal Phantom Ultrasound*. OpenH-RF. CC BY 4.0.
 
15
  - multimodal
16
  - timeseries
17
  - video
18
+ - open-h-rf
19
  language:
20
  - en
21
  size_categories:
 
26
 
27
  ![Example reconstruction](./assets/module_C.png)
28
 
29
+ *Scan-converted B-mode of the Kyoto Kagaku SPACE FAN-ST fetal phantom, reconstructed from the synthetic channel data in [`acquisitions/`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/ubc/module_C/acquisitions).*
30
 
31
  ## Dataset Description
32
 
 
101
 
102
  ```bash
103
  zea process \
104
+ --dataset hf://nvidia/Open-H-RF/ubc/module_C/acquisitions/session_01/session_01_f1306.hdf5 \
105
+ --config hf://nvidia/Open-H-RF/ubc/module_C/pipeline.yaml
106
  ```
107
 
108
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/ubc/module_C/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
109
 
110
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick a frame (default `session_01/session_01_f1306.hdf5`).
111
 
 
232
 
233
  The HDF5 `metadata/credit` field carries the following attribution:
234
 
235
+ > University of British Columbia Open-H-RF contributors (2026). *UBC Module C: Synthetic Channel Proxy and Multimodal Fetal Phantom Ultrasound*. Open-H-RF. CC BY 4.0.
unc-liver/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - synthetic-aperture
12
  - curvilinear
13
  - sound-speed-estimation
@@ -25,7 +25,7 @@ size_categories:
25
  <img src="assets/main.png" alt="Scan-converted B-mode through a simulated abdominal wall" width="480">
26
  </p>
27
 
28
- *Scan-converted B-mode reconstructed from the full-synthetic-aperture channel data of one simulated acquisition in [`data/`](https://huggingface.co/datasets/nvidia/OpenH-RF/tree/main/unc-liver/data): the abdominal wall layers in the near field above the liver.*
29
 
30
  ## Dataset Description
31
 
@@ -82,7 +82,7 @@ The NLM does not endorse this dataset, and nothing here should be read as implyi
82
 
83
  ## Processing the Dataset
84
 
85
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/unc-liver/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
86
 
87
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick an acquisition. For current release files, use `zea==0.1.6` and any Keras backend (`reconstruct.py` falls back to torch if `KERAS_BACKEND` is unset, but respects whatever you have configured).
88
 
@@ -130,7 +130,7 @@ All maps are on the polar reconstruction grid: 640 radial samples spanning 5.0
130
 
131
  ## Dataset Quantification
132
 
133
- **Current OpenH-RF release:** 1,906 HDF5 files; 202.69 GB (202,692,755,456 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
134
 
135
  - **1906 acquisitions**, 1 frame each, 128 transmits × 128 receives per acquisition.
136
  - **Stored HDF5 size:** 202.69 GB (202,692,755,456 bytes).
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - synthetic-aperture
12
  - curvilinear
13
  - sound-speed-estimation
 
25
  <img src="assets/main.png" alt="Scan-converted B-mode through a simulated abdominal wall" width="480">
26
  </p>
27
 
28
+ *Scan-converted B-mode reconstructed from the full-synthetic-aperture channel data of one simulated acquisition in [`data/`](https://huggingface.co/datasets/nvidia/Open-H-RF/tree/main/unc-liver/data): the abdominal wall layers in the near field above the liver.*
29
 
30
  ## Dataset Description
31
 
 
82
 
83
  ## Processing the Dataset
84
 
85
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/unc-liver/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
86
 
87
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick an acquisition. For current release files, use `zea==0.1.6` and any Keras backend (`reconstruct.py` falls back to torch if `KERAS_BACKEND` is unset, but respects whatever you have configured).
88
 
 
130
 
131
  ## Dataset Quantification
132
 
133
+ **Current Open-H-RF release:** 1,906 HDF5 files; 202.69 GB (202,692,755,456 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
134
 
135
  - **1906 acquisitions**, 1 frame each, 128 transmits × 128 receives per acquisition.
136
  - **Stored HDF5 size:** 202.69 GB (202,692,755,456 bytes).
unc-openpros/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - prostate
12
  - usct
13
  - speed-of-sound
@@ -26,7 +26,7 @@ size_categories:
26
 
27
  <!-- ![Speed-of-sound map of a prostate slice, predicted by InversionNet](assets/main.png) -->
28
 
29
- *Speed of sound predicted from the limited-view waveform data of the first acquisition in [`data/3_01_P_prostate_00.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/unc-openpros/data/3_01_P_prostate_00.hdf5) with the pretrained OpenPros InversionNet.*
30
 
31
  ## Dataset Description
32
 
@@ -83,7 +83,7 @@ The original license was [Creative Commons Attribution-NonCommercial-ShareAlike
83
 
84
  ## Processing the Dataset
85
 
86
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/unc-openpros/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
87
 
88
  The reconstruction script checks the input shapes and writes two files: `pred_sos.png`, a side-by-side comparison of the predicted and ground-truth SOS maps, and [`assets/main.png`](assets/main.png), a clean, unlabeled hero image of just the prediction.
89
 
@@ -106,7 +106,7 @@ The file also stores source positions, probe geometry, scan parameters, subject
106
 
107
  ## Dataset Quantification
108
 
109
- **Current OpenH-RF release:** 248 HDF5 files; 6.03 TB (6,031,699,279,872 bytes) stored; root `zea_version` **0.1.5**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
110
 
111
  The original OpenPros source documentation reports 280,000 paired samples (approximately 6.8 TB) with an official split of 224,000 training, 28,000 validation, and 28,000 test samples. It is derived from four patient-level clinical anatomies and 62 ex vivo prostate specimens. Each published HDF5 file here holds 1,140 acquisitions.
112
 
@@ -122,7 +122,7 @@ The converted release identifies its content as a simulation and stores composit
122
 
123
  ## Data Validation
124
 
125
- `reconstruct.py` loads [`pipeline.yaml`](pipeline.yaml) (also published on the Hub at [`hf://nvidia/OpenH-RF/unc-openpros/pipeline.yaml`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/unc-openpros/pipeline.yaml)), a `zea.Pipeline` that reproduces the OpenPros InversionNet preprocessing and postprocessing:
126
 
127
  1. Restore the original acquisition-block order: body/body, body/rectum, rectum/rectum, and rectum/body.
128
  2. Apply the sign-preserving logarithmic transform `sign(x) * log1p(abs(1e5 * x))`.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - prostate
12
  - usct
13
  - speed-of-sound
 
26
 
27
  <!-- ![Speed-of-sound map of a prostate slice, predicted by InversionNet](assets/main.png) -->
28
 
29
+ *Speed of sound predicted from the limited-view waveform data of the first acquisition in [`data/3_01_P_prostate_00.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/unc-openpros/data/3_01_P_prostate_00.hdf5) with the pretrained OpenPros InversionNet.*
30
 
31
  ## Dataset Description
32
 
 
83
 
84
  ## Processing the Dataset
85
 
86
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/unc-openpros/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
87
 
88
  The reconstruction script checks the input shapes and writes two files: `pred_sos.png`, a side-by-side comparison of the predicted and ground-truth SOS maps, and [`assets/main.png`](assets/main.png), a clean, unlabeled hero image of just the prediction.
89
 
 
106
 
107
  ## Dataset Quantification
108
 
109
+ **Current Open-H-RF release:** 248 HDF5 files; 6.03 TB (6,031,699,279,872 bytes) stored; root `zea_version` **0.1.5**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
110
 
111
  The original OpenPros source documentation reports 280,000 paired samples (approximately 6.8 TB) with an official split of 224,000 training, 28,000 validation, and 28,000 test samples. It is derived from four patient-level clinical anatomies and 62 ex vivo prostate specimens. Each published HDF5 file here holds 1,140 acquisitions.
112
 
 
122
 
123
  ## Data Validation
124
 
125
+ `reconstruct.py` loads [`pipeline.yaml`](pipeline.yaml) (also published on the Hub at [`hf://nvidia/Open-H-RF/unc-openpros/pipeline.yaml`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/unc-openpros/pipeline.yaml)), a `zea.Pipeline` that reproduces the OpenPros InversionNet preprocessing and postprocessing:
126
 
127
  1. Restore the original acquisition-block order: body/body, body/rectum, rectum/rectum, and rectum/body.
128
  2. Apply the sign-preserving logarithmic transform `sign(x) * log1p(abs(1e5 * x))`.
us4us/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - zea
12
  - usct
13
  - tomography
@@ -24,7 +24,7 @@ size_categories:
24
 
25
  ![Ring-array USCT reconstruction of a forearm cross-section](assets/s1_l_reconstruct.png)
26
 
27
- *A left-forearm cross-section, slice 8 of [`data/s1_l.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/us4us/data/s1_l.hdf5), reconstructed beside the sinogram and reference image stored in the file.*
28
 
29
  ## Dataset Description
30
  Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
@@ -79,7 +79,7 @@ Ultrasound computed tomography image reconstruction.
79
 
80
  ## Processing the Dataset
81
 
82
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/us4us/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
83
 
84
  The script rebuilds the attenuation sinogram and filtered-backprojection image from `data/raw_data` and plots them beside the versions stored in the file. Set `ZEA_FILE` and `FRAME` (the slice) at the top of the script.
85
 
@@ -91,7 +91,7 @@ All sub-datasets are provided in the ZEA file format. No preprocessing was perfo
91
 
92
  ## Dataset Quantification
93
 
94
- **Current OpenH-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
95
 
96
  * Each forearm HDF5 file contains 10 slices of the subject; `yezitronix-b-rg-1.2.hdf5` contains 11 and `reference_water.hdf5` a single slice.
97
  * Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - zea
12
  - usct
13
  - tomography
 
24
 
25
  ![Ring-array USCT reconstruction of a forearm cross-section](assets/s1_l_reconstruct.png)
26
 
27
+ *A left-forearm cross-section, slice 8 of [`data/s1_l.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/us4us/data/s1_l.hdf5), reconstructed beside the sinogram and reference image stored in the file.*
28
 
29
  ## Dataset Description
30
  Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
 
79
 
80
  ## Processing the Dataset
81
 
82
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/us4us/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
83
 
84
  The script rebuilds the attenuation sinogram and filtered-backprojection image from `data/raw_data` and plots them beside the versions stored in the file. Set `ZEA_FILE` and `FRAME` (the slice) at the top of the script.
85
 
 
91
 
92
  ## Dataset Quantification
93
 
94
+ **Current Open-H-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
95
 
96
  * Each forearm HDF5 file contains 10 slices of the subject; `yezitronix-b-rg-1.2.hdf5` contains 11 and `reference_water.hdf5` a single slice.
97
  * Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
vanderbilt/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - echocardiography
12
  - cardiac
13
  - harmonic-imaging
@@ -22,7 +22,7 @@ size_categories:
22
 
23
  ![Cineloop of the left atrial appendage](assets/118420_1_Focused_Uncoded_TX.gif)
24
 
25
- *One cineloop of a fundamental focused-transmit acquisition, [`data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/vanderbilt/data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5).*
26
 
27
  ## Dataset Description
28
 
@@ -66,12 +66,12 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
66
 
67
  ```bash
68
  zea process \
69
- --dataset hf://nvidia/OpenH-RF/vanderbilt/data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5 \
70
- --config hf://nvidia/OpenH-RF/vanderbilt/pipeline.yaml \
71
  --n-frames 10
72
  ```
73
 
74
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/vanderbilt/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
75
 
76
  Set `ZEA_FILE` and `N_FRAMES` at the top of the script to pick a file and how many frames to beamform.
77
 
@@ -102,7 +102,7 @@ The current release uses the migrated schema; inspect each file's root `zea_vers
102
 
103
  ## Dataset Quantification
104
 
105
- **Current OpenH-RF release:** 165 HDF5 files; 185.58 GB (185,584,517,120 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
106
 
107
  - **Samples:** 82 cineloops (32 frames each) from 30 patients — 2,624 fundamental frames
108
  - Plus a matching set of 2,624 harmonic frames (same cineloops, harmonic sequence)
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - echocardiography
12
  - cardiac
13
  - harmonic-imaging
 
22
 
23
  ![Cineloop of the left atrial appendage](assets/118420_1_Focused_Uncoded_TX.gif)
24
 
25
+ *One cineloop of a fundamental focused-transmit acquisition, [`data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/vanderbilt/data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5).*
26
 
27
  ## Dataset Description
28
 
 
66
 
67
  ```bash
68
  zea process \
69
+ --dataset hf://nvidia/Open-H-RF/vanderbilt/data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5 \
70
+ --config hf://nvidia/Open-H-RF/vanderbilt/pipeline.yaml \
71
  --n-frames 10
72
  ```
73
 
74
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/vanderbilt/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
75
 
76
  Set `ZEA_FILE` and `N_FRAMES` at the top of the script to pick a file and how many frames to beamform.
77
 
 
102
 
103
  ## Dataset Quantification
104
 
105
+ **Current Open-H-RF release:** 165 HDF5 files; 185.58 GB (185,584,517,120 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
106
 
107
  - **Samples:** 82 cineloops (32 frames each) from 30 patients — 2,624 fundamental frames
108
  - Plus a matching set of 2,624 harmonic frames (same cineloops, harmonic sequence)
waterloo-carotid/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - medical-imaging
12
  - in-vivo
13
  - carotid-artery
@@ -24,7 +24,7 @@ size_categories:
24
 
25
  ![Reconstructed cineloop from Acq1.hdf5](assets/Acq1.gif)
26
 
27
- *Cine loop of [`data/Acq1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/waterloo-carotid/data/Acq1.hdf5), rendered using provided velocity fields.*
28
 
29
  ## Dataset Description
30
 
@@ -65,13 +65,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
65
 
66
  ```bash
67
  zea process \
68
- --dataset hf://nvidia/OpenH-RF/waterloo-carotid/data/Acq1.hdf5 \
69
- --config hf://nvidia/OpenH-RF/waterloo-carotid/pipeline.yaml \
70
  --n-frames 1 \
71
  --save-as png
72
  ```
73
 
74
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/waterloo-carotid/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
75
 
76
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE`, `FRAME` and `POWER_THRESHOLD` (the power-Doppler mask threshold, in dB) at the top select what is reconstructed and overlaid.
77
 
@@ -108,7 +108,7 @@ All `coordinates` arrays are per-pixel Cartesian positions in meters, last axis
108
 
109
  ## Dataset Quantification
110
 
111
- **Current OpenH-RF release:** 93 HDF5 files; 6.90 TB (6,902,089,770,179 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
112
 
113
  Data was collected from 8 participants, spanning carotid arteries (Common Carotid Artery and Internal Carotid Artery) in both longitudinal and cross-sectional views. In total, the dataset consists of 93 acquisitions, containing 30,000 or 36,000 frames of raw RF data per acquisition (47 acquisitions of 30,000 frames and 46 of 36,000 frames).
114
  Each common carotid artery frame comprises 2 steered plane-wave transmits (`n_tx = 2`), 2048 axial samples, and 128 receive channels. Each internal carotid artery frame comprises 1 steered plane-wave transmits (`n_tx = 1`), 1536 axial samples, and 128 receive channels.
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - medical-imaging
12
  - in-vivo
13
  - carotid-artery
 
24
 
25
  ![Reconstructed cineloop from Acq1.hdf5](assets/Acq1.gif)
26
 
27
+ *Cine loop of [`data/Acq1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/waterloo-carotid/data/Acq1.hdf5), rendered using provided velocity fields.*
28
 
29
  ## Dataset Description
30
 
 
65
 
66
  ```bash
67
  zea process \
68
+ --dataset hf://nvidia/Open-H-RF/waterloo-carotid/data/Acq1.hdf5 \
69
+ --config hf://nvidia/Open-H-RF/waterloo-carotid/pipeline.yaml \
70
  --n-frames 1 \
71
  --save-as png
72
  ```
73
 
74
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/waterloo-carotid/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
75
 
76
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE`, `FRAME` and `POWER_THRESHOLD` (the power-Doppler mask threshold, in dB) at the top select what is reconstructed and overlaid.
77
 
 
108
 
109
  ## Dataset Quantification
110
 
111
+ **Current Open-H-RF release:** 93 HDF5 files; 6.90 TB (6,902,089,770,179 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
112
 
113
  Data was collected from 8 participants, spanning carotid arteries (Common Carotid Artery and Internal Carotid Artery) in both longitudinal and cross-sectional views. In total, the dataset consists of 93 acquisitions, containing 30,000 or 36,000 frames of raw RF data per acquisition (47 acquisitions of 30,000 frames and 46 of 36,000 frames).
114
  Each common carotid artery frame comprises 2 steered plane-wave transmits (`n_tx = 2`), 2048 axial samples, and 128 receive channels. Each internal carotid artery frame comprises 1 steered plane-wave transmits (`n_tx = 1`), 1536 axial samples, and 128 receive channels.
waterloo-femoralvein/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - medical-imaging
12
  - in-vivo
13
  - femoral-vein
@@ -25,7 +25,7 @@ size_categories:
25
 
26
  ![Vector flow cineloop from Acq0.hdf5](assets/Acq0.gif)
27
 
28
- *Cine loop of [`data/Acq0.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/waterloo-femoralvein/data/Acq0.hdf5), rendered from provided velocity fields.*
29
 
30
  ## Dataset Description
31
 
@@ -67,13 +67,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
67
 
68
  ```bash
69
  zea process \
70
- --dataset hf://nvidia/OpenH-RF/waterloo-femoralvein/data/Acq0.hdf5 \
71
- --config hf://nvidia/OpenH-RF/waterloo-femoralvein/pipeline.yaml \
72
  --n-frames 1 \
73
  --save-as png
74
  ```
75
 
76
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/waterloo-femoralvein/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
77
 
78
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE`, `FRAME`, `POWER_THRESHOLD` (the power-Doppler mask threshold, in dB), `VMAX` (velocity colour-scale maximum) and `NO_DEALIAS` at the top select what is reconstructed and overlaid.
79
 
@@ -115,7 +115,7 @@ All `coordinates` arrays are per-pixel Cartesian positions in meters, last axis
115
 
116
  ## Dataset Quantification
117
 
118
- **Current OpenH-RF release:** 15 HDF5 files; 941.96 GB (941,958,804,227 bytes) stored; root `zea_version` **0.1.5**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
119
 
120
  Data was collected from 15 participants and consists of 15 acquisitions (one per participant), containing 12,000 frames of raw RF data per acquisition. Each participant performed isometric plantarflexion contractions at 8 Kg under head up tilt of 40 degrees. Each femoral vein acquisition comprises 2 steered plane-wave transmits (`n_tx = 2`), 2048/3072 axial samples, and 192 receive channels.
121
 
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - medical-imaging
12
  - in-vivo
13
  - femoral-vein
 
25
 
26
  ![Vector flow cineloop from Acq0.hdf5](assets/Acq0.gif)
27
 
28
+ *Cine loop of [`data/Acq0.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/waterloo-femoralvein/data/Acq0.hdf5), rendered from provided velocity fields.*
29
 
30
  ## Dataset Description
31
 
 
67
 
68
  ```bash
69
  zea process \
70
+ --dataset hf://nvidia/Open-H-RF/waterloo-femoralvein/data/Acq0.hdf5 \
71
+ --config hf://nvidia/Open-H-RF/waterloo-femoralvein/pipeline.yaml \
72
  --n-frames 1 \
73
  --save-as png
74
  ```
75
 
76
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/waterloo-femoralvein/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
77
 
78
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE`, `FRAME`, `POWER_THRESHOLD` (the power-Doppler mask threshold, in dB), `VMAX` (velocity colour-scale maximum) and `NO_DEALIAS` at the top select what is reconstructed and overlaid.
79
 
 
115
 
116
  ## Dataset Quantification
117
 
118
+ **Current Open-H-RF release:** 15 HDF5 files; 941.96 GB (941,958,804,227 bytes) stored; root `zea_version` **0.1.5**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
119
 
120
  Data was collected from 15 participants and consists of 15 acquisitions (one per participant), containing 12,000 frames of raw RF data per acquisition. Each participant performed isometric plantarflexion contractions at 8 Kg under head up tilt of 40 degrees. Each femoral vein acquisition comprises 2 steered plane-wave transmits (`n_tx = 2`), 2048/3072 axial samples, and 192 receive channels.
121
 
waterloo-muscle/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - medical-imaging
12
  - in-vivo
13
  - muscle
@@ -23,7 +23,7 @@ size_categories:
23
 
24
  ![Reconstructed cineloop from Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5](assets/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.gif)
25
 
26
- *Cine loop of the relaxed left calf (lateral, longitudinal), [`data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/waterloo-muscle/data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
27
 
28
  ## Dataset Description
29
 
@@ -73,13 +73,13 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
73
 
74
  ```bash
75
  zea process \
76
- --dataset hf://nvidia/OpenH-RF/waterloo-muscle/data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5 \
77
- --config hf://nvidia/OpenH-RF/waterloo-muscle/pipeline.yaml \
78
  --n-frames 1 \
79
  --save-as png
80
  ```
81
 
82
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/waterloo-muscle/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
83
 
84
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE` and `FRAME` at the top select what is reconstructed.
85
 
@@ -112,7 +112,7 @@ All `coordinates` arrays are per-pixel Cartesian positions in metres, last axis
112
 
113
  ## Dataset Quantification
114
 
115
- **Current OpenH-RF release:** 1,248 HDF5 files; 576.19 GB (576,186,417,152 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
116
 
117
  Data was collected from 39 participants, each with 32 unique images spanning calf/bicep/quad, axis and muscle state. For each imaging location, 15 frames were made per limb under minimal contact and with pressure. Given that each frame consisted of 31 steered plane waves, our protocol yielded a total of 15 repeats × 31 transmits × 8 views × 2 sides × 2 pressure settings = 14,880 frame-transmits per participant, i.e. 480 stored frames per participant. In total the dataset contains 18,720 stored frames and 580,320 frame-transmits (see the table below).
118
 
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - medical-imaging
12
  - in-vivo
13
  - muscle
 
23
 
24
  ![Reconstructed cineloop from Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5](assets/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.gif)
25
 
26
+ *Cine loop of the relaxed left calf (lateral, longitudinal), [`data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/waterloo-muscle/data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
27
 
28
  ## Dataset Description
29
 
 
73
 
74
  ```bash
75
  zea process \
76
+ --dataset hf://nvidia/Open-H-RF/waterloo-muscle/data/Acq_p35_Calf_left_calf_lateral_longitudinal_relaxed_pressure.hdf5 \
77
+ --config hf://nvidia/Open-H-RF/waterloo-muscle/pipeline.yaml \
78
  --n-frames 1 \
79
  --save-as png
80
  ```
81
 
82
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/waterloo-muscle/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF).
83
 
84
  Swap `--n-frames 1 --save-as png` for `--save-as gif` to get the cine loop. In the script, `ZEA_FILE` and `FRAME` at the top select what is reconstructed.
85
 
 
112
 
113
  ## Dataset Quantification
114
 
115
+ **Current Open-H-RF release:** 1,248 HDF5 files; 576.19 GB (576,186,417,152 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
116
 
117
  Data was collected from 39 participants, each with 32 unique images spanning calf/bicep/quad, axis and muscle state. For each imaging location, 15 frames were made per limb under minimal contact and with pressure. Given that each frame consisted of 31 steered plane waves, our protocol yielded a total of 15 repeats × 31 transmits × 8 views × 2 sides × 2 pressure settings = 14,880 frame-transmits per participant, i.e. 480 stored frames per participant. In total the dataset contains 18,720 stored frames and 580,320 frame-transmits (see the table below).
118
 
weillcornell/README.md CHANGED
@@ -8,7 +8,7 @@ task_categories:
8
  tags:
9
  - ultrasound
10
  - rf
11
- - openh-rf
12
  - quantitative-ultrasound
13
  - phantom
14
  - raw-channel-data
@@ -22,7 +22,7 @@ size_categories:
22
 
23
  ![Weill Cornell QUS phantom dataset: B-mode, pooled Nakagami maps, and theoretical BSC curves](assets/hero.png)
24
 
25
- *B-mode (frame 0) and 20-frame pooled Nakagami maps from [`data/ac10_15m_SK.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/weillcornell/data/ac10_15m_SK.hdf5). The BSC curves are material-model references for the three phantoms; pooled Nakagami maps are statistical references.*
26
 
27
  ## Dataset Description
28
 
@@ -67,11 +67,11 @@ The acquisitions can be processed with the `pipeline.yaml` definition in this fo
67
 
68
  ```bash
69
  zea process \
70
- --dataset hf://nvidia/OpenH-RF/weillcornell/data/ac10_15m_SK.hdf5 \
71
- --config hf://nvidia/OpenH-RF/weillcornell/pipeline.yaml
72
  ```
73
 
74
- Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/weillcornell/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF). Besides the B-mode, it prints the selected frame's BSC band and unit, the QUS map shapes, and the error of the direct per-frame Nakagami maps against the pooled references.
75
 
76
  ## Dataset Format
77
 
@@ -85,7 +85,7 @@ The theoretical BSC is a homogeneous phantom material property: each phantom has
85
 
86
  ## Dataset Quantification
87
 
88
- **Current OpenH-RF release:** 120 HDF5 files; 1.00 GB (1,002,700,800 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
89
 
90
  - **Acquisitions / frames:** 120 acquisitions (3 phantoms x 2 operators x 20 probe placements, one HDF5 file each), 20 frames per acquisition — 2,400 frames total
91
  - **File naming:** `data/ac<n>_<phantom>_<operator>.hdf5`, with `n` from 1 to 20, e.g. `ac10_15m_SK.hdf5`
 
8
  tags:
9
  - ultrasound
10
  - rf
11
+ - open-h-rf
12
  - quantitative-ultrasound
13
  - phantom
14
  - raw-channel-data
 
22
 
23
  ![Weill Cornell QUS phantom dataset: B-mode, pooled Nakagami maps, and theoretical BSC curves](assets/hero.png)
24
 
25
+ *B-mode (frame 0) and 20-frame pooled Nakagami maps from [`data/ac10_15m_SK.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/weillcornell/data/ac10_15m_SK.hdf5). The BSC curves are material-model references for the three phantoms; pooled Nakagami maps are statistical references.*
26
 
27
  ## Dataset Description
28
 
 
67
 
68
  ```bash
69
  zea process \
70
+ --dataset hf://nvidia/Open-H-RF/weillcornell/data/ac10_15m_SK.hdf5 \
71
+ --config hf://nvidia/Open-H-RF/weillcornell/pipeline.yaml
72
  ```
73
 
74
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/weillcornell/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF). Besides the B-mode, it prints the selected frame's BSC band and unit, the QUS map shapes, and the error of the direct per-frame Nakagami maps against the pooled references.
75
 
76
  ## Dataset Format
77
 
 
85
 
86
  ## Dataset Quantification
87
 
88
+ **Current Open-H-RF release:** 120 HDF5 files; 1.00 GB (1,002,700,800 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
89
 
90
  - **Acquisitions / frames:** 120 acquisitions (3 phantoms x 2 operators x 20 probe placements, one HDF5 file each), 20 frames per acquisition — 2,400 frames total
91
  - **File naming:** `data/ac<n>_<phantom>_<operator>.hdf5`, with `n` from 1 to 20, e.g. `ac10_15m_SK.hdf5`
weizmann-sampl/README.md CHANGED
@@ -19,7 +19,7 @@ language:
19
 
20
  ![Reconstructed cineloop from 30_1.hdf5](assets/30_1.gif)
21
 
22
- *Cine loop of a thyroid scan, [`data/30_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/weizmann-sampl/data/30_1.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
23
 
24
  ## Dataset Description
25
 
@@ -51,7 +51,7 @@ General-purpose ultrasound channel-data foundation model pretraining and evaluat
51
 
52
  ## Processing the Dataset
53
 
54
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/weizmann-sampl/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
55
 
56
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick a scan and frame; setting `ZEA_FILE = None` switches to the grid modes that sample several scans (see the script docstring).
57
 
@@ -63,7 +63,7 @@ zea file format, one acquisition HDF5 file per subject. Before packaging, the fr
63
 
64
  ## Dataset Quantification
65
 
66
- **Current OpenH-RF release:** 30 HDF5 files; 232.57 GB (232,573,960,192 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
67
 
68
  - Number of samples / acquisitions / channels: ~1600 / 128 / 128
69
  - Number of frames: average 250 (dependent on subject)
 
19
 
20
  ![Reconstructed cineloop from 30_1.hdf5](assets/30_1.gif)
21
 
22
+ *Cine loop of a thyroid scan, [`data/30_1.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/weizmann-sampl/data/30_1.hdf5), reconstructed from the raw channel data with the `pipeline.yaml` in this folder.*
23
 
24
  ## Dataset Description
25
 
 
51
 
52
  ## Processing the Dataset
53
 
54
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/weizmann-sampl/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub.
55
 
56
  Set `ZEA_FILE` and `FRAME` at the top of the script to pick a scan and frame; setting `ZEA_FILE = None` switches to the grid modes that sample several scans (see the script docstring).
57
 
 
63
 
64
  ## Dataset Quantification
65
 
66
+ **Current Open-H-RF release:** 30 HDF5 files; 232.57 GB (232,573,960,192 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
67
 
68
  - Number of samples / acquisitions / channels: ~1600 / 128 / 128
69
  - Number of frames: average 250 (dependent on subject)
wpi/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - rf
10
- - openh-rf
11
  - 3d
12
  - beamforming
13
  - elevational-saf
@@ -21,7 +21,7 @@ size_categories:
21
 
22
  <p align="center"><img src="assets/esaf_topview_sweep.gif" width="55%" alt="Top-view MIP: the naive reconstruction (magenta) accumulating into a smear arc as the probe sweeps 180 degrees about the rotation axis, against the eSAF label (cyan)"></p>
23
 
24
- *Top view down the rotation axis of a point target at 20 mm depth, 6 mm off-axis, [`data/tall_elev_H12__point_z020_r6.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/wpi/data/tall_elev_H12__point_z020_r6.hdf5). Magenta is the naive per-angle reconstruction, filling in as the array (white line) sweeps 180° about the rotation axis (small circle); cyan is the paired eSAF label shipped in the file; white is where both agree. eSAF collapses the rotational smear arc back onto the target (arc-FWHM 1.26 → 0.39 mm).*
25
 
26
  ## Dataset Description
27
 
@@ -56,7 +56,7 @@ Advanced beamforming and **elevational resolution recovery** for rotational 3D U
56
 
57
  ## Processing the Dataset
58
 
59
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/wpi/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub, beamforms the rotation frame closest to ±90° (where an off-axis target lies in-plane) and plots it beside the per-frame rotation angle from `metadata/probe_pose`. Set `ZEA_FILE` and `FRAME` at the top of the script to pick another acquisition or frame. The default, frame 90 (~−90°) of [`data/experiment__acq_exp_30mm.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/wpi/data/experiment__acq_exp_30mm.hdf5), gives:
60
 
61
  <p align="center"><img src="assets/bmode.png" width="70%" alt="B-mode frame of the measured phantom at -90 deg probe rotation, with the per-frame rotation-angle trajectory alongside it"></p>
62
 
@@ -82,7 +82,7 @@ Pre-processing: none for the simulations beyond the forward model; for the measu
82
 
83
  ## Dataset Quantification
84
 
85
- **Current OpenH-RF release:** 195 HDF5 files; 1.87 GB (1,870,462,976 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
86
 
87
  - **Acquisitions:** **195** = **190 simulated** + **5 measured phantom**.
88
  - *Simulated (190):* **10 probe types × 19 targets** (16 single points over depth {20,45,80,130} mm × radial offset from the rotation centre {0,2,4,6} mm, plus 3 pair/oblique cases). The probe axis is listed above under Data Collection Method; each file's own `description` attribute gives its exact probe/target/r0/depth. (The earlier compatible set has 18 acquisitions.)
 
7
  tags:
8
  - ultrasound
9
  - rf
10
+ - open-h-rf
11
  - 3d
12
  - beamforming
13
  - elevational-saf
 
21
 
22
  <p align="center"><img src="assets/esaf_topview_sweep.gif" width="55%" alt="Top-view MIP: the naive reconstruction (magenta) accumulating into a smear arc as the probe sweeps 180 degrees about the rotation axis, against the eSAF label (cyan)"></p>
23
 
24
+ *Top view down the rotation axis of a point target at 20 mm depth, 6 mm off-axis, [`data/tall_elev_H12__point_z020_r6.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/wpi/data/tall_elev_H12__point_z020_r6.hdf5). Magenta is the naive per-angle reconstruction, filling in as the array (white line) sweeps 180° about the rotation axis (small circle); cyan is the paired eSAF label shipped in the file; white is where both agree. eSAF collapses the rotational smear arc back onto the target (arc-FWHM 1.26 → 0.39 mm).*
25
 
26
  ## Dataset Description
27
 
 
56
 
57
  ## Processing the Dataset
58
 
59
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/wpi/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub, beamforms the rotation frame closest to ±90° (where an off-axis target lies in-plane) and plots it beside the per-frame rotation angle from `metadata/probe_pose`. Set `ZEA_FILE` and `FRAME` at the top of the script to pick another acquisition or frame. The default, frame 90 (~−90°) of [`data/experiment__acq_exp_30mm.hdf5`](https://huggingface.co/datasets/nvidia/Open-H-RF/blob/main/wpi/data/experiment__acq_exp_30mm.hdf5), gives:
60
 
61
  <p align="center"><img src="assets/bmode.png" width="70%" alt="B-mode frame of the measured phantom at -90 deg probe rotation, with the per-frame rotation-angle trajectory alongside it"></p>
62
 
 
82
 
83
  ## Dataset Quantification
84
 
85
+ **Current Open-H-RF release:** 195 HDF5 files; 1.87 GB (1,870,462,976 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
86
 
87
  - **Acquisitions:** **195** = **190 simulated** + **5 measured phantom**.
88
  - *Simulated (190):* **10 probe types × 19 targets** (16 single points over depth {20,45,80,130} mm × radial offset from the rotation centre {0,2,4,6} mm, plus 3 pair/oblique cases). The probe axis is listed above under Data Collection Method; each file's own `description` attribute gives its exact probe/target/r0/depth. (The earlier compatible set has 18 acquisitions.)
wpi/pipeline.yaml CHANGED
@@ -1,4 +1,4 @@
1
- # Beamforming config for the OpenH-RF eSAF rotational 3D ultrasound sub-dataset.
2
  #
3
  # Each acquisition is raw RF channel data (n_ch = 1) from a single normal
4
  # plane-wave transmit per rotation frame on the JP_Linear_68 linear array
 
1
+ # Beamforming config for the Open-H-RF eSAF rotational 3D ultrasound sub-dataset.
2
  #
3
  # Each acquisition is raw RF channel data (n_ch = 1) from a single normal
4
  # plane-wave transmit per rotation frame on the JP_Linear_68 linear array