Datasets:

ArXiv:
License:

ulmshare: align the data card with GitHub

#95
by tristan-deep - opened
Files changed (1) hide show
  1. ulmshare/README.md +4 -4
ulmshare/README.md CHANGED
@@ -7,7 +7,7 @@ task_categories:
7
  tags:
8
  - ultrasound
9
  - iq
10
- - openh-rf
11
  - ulm
12
  - super-resolution
13
  - microbubbles
@@ -24,7 +24,7 @@ size_categories:
24
 
25
  <p align="center">
26
  <img width="500"
27
- src="https://huggingface.co/datasets/nvidia/OpenH-RF/resolve/main/ulmshare/assets/hero.gif"
28
  alt="Ultrasound localization microscopy of the mouse brain." />
29
  <em style="color: #888;">
30
  ULM super-resolution reconstruction of a mouse brain.
@@ -79,7 +79,7 @@ Ultrasound localization microscopy: microbubble detection and localization, fram
79
 
80
  ## Processing the Dataset
81
 
82
- The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/ulmshare/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF), together with the `pipeline_bmode.yaml` and `pipeline_tissue_suppression.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub and writes a B-mode, a power-Doppler image and movie, and a ULM density map (the ULM steps live in [`ulm.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/ulmshare/ulm.py)).
83
 
84
  ## Dataset Format
85
 
@@ -137,7 +137,7 @@ Acquisition context with no zea spec field, stored as strings exactly as recorde
137
 
138
  ## Dataset Quantification
139
 
140
- **Current OpenH-RF release:** 103 HDF5 files; 20.74 TB (20,735,658,275,478 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
141
 
142
  - **Acquisitions:** 99, from 61 mice — one zea HDF5 file per acquisition.
143
  - **Stored HDF5 size:** 20.74 TB (20,735,658,275,478 bytes).
 
7
  tags:
8
  - ultrasound
9
  - iq
10
+ - open-h-rf
11
  - ulm
12
  - super-resolution
13
  - microbubbles
 
24
 
25
  <p align="center">
26
  <img width="500"
27
+ src="https://huggingface.co/datasets/nvidia/Open-H-RF/resolve/main/ulmshare/assets/hero.gif"
28
  alt="Ultrasound localization microscopy of the mouse brain." />
29
  <em style="color: #888;">
30
  ULM super-resolution reconstruction of a mouse brain.
 
79
 
80
  ## Processing the Dataset
81
 
82
+ The acquisitions can be processed with the `reconstruct.py` [script](https://github.com/open-h/Open-H-RF/blob/main/datasets/ulmshare/reconstruct.py) as provided in the [Open-H-RF GitHub repository](https://github.com/open-h/Open-H-RF), together with the `pipeline_bmode.yaml` and `pipeline_tissue_suppression.yaml` definitions in this folder and the [zea library](https://github.com/tue-bmd/zea). The script streams the data from the Hugging Face Hub and writes a B-mode, a power-Doppler image and movie, and a ULM density map (the ULM steps live in [`ulm.py`](https://github.com/open-h/Open-H-RF/blob/main/datasets/ulmshare/ulm.py): per 400-frame buffer, buffers with tissue motion are skipped, microbubbles are localized against a per-depth noise floor, linked into tracks with a Hungarian tracker, and the tracks are drawn into a super-resolved density map).
83
 
84
  ## Dataset Format
85
 
 
137
 
138
  ## Dataset Quantification
139
 
140
+ **Current Open-H-RF release:** 103 HDF5 files; 20.74 TB (20,735,658,275,478 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
141
 
142
  - **Acquisitions:** 99, from 61 mice — one zea HDF5 file per acquisition.
143
  - **Stored HDF5 size:** 20.74 TB (20,735,658,275,478 bytes).