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5.09 kB
| name: technion-phantom | |
| pretty_name: "Technion Phantom Pre-Beamformed Channel Data" | |
| license: cc-by-4.0 | |
| task_categories: | |
| - image-to-image | |
| tags: | |
| - ultrasound | |
| - iq | |
| - openh-rf | |
| - beamforming | |
| - phantom | |
| - 3d | |
| language: | |
| - en | |
| size_categories: | |
| - n<1K | |
| # Technion Tissue-mimicking Phantom Pre-beamformed RF Channel Data | |
|  | |
| *Frame 6 of [`data/ph.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/phantom/data/ph.hdf5), reconstructed by `reconstruct.py`.* | |
| ## Dataset Description | |
| Pre-beamformed ultrasound **channel data** from a tissue-mimicking phantom, acquired on the same 64-element phased-array sector scheme as the in-vivo collection (180 transmit beams steered over ±45.13°, one image line per transmit), for **calibration and verification**. Contains resolvable point targets and an anechoic cyst — a clean reference for validating beamforming and reconstruction. 12 frames, one acquisition. | |
| ## Dataset Contributor(s) | |
| - Sanketh Vedula <sanketh@campus.technion.ac.il> (primary contact) | |
| - Ortal Senouf | |
| - Dean Zadok | |
| - Alex M. Bronstein (PI) | |
| - Technion – Israel Institute of Technology | |
| ## Dataset Creation Date | |
| Source data 2018; converted to the OpenH-RF (zea) format 07/16/2026. | |
| ## License / Terms of Use | |
| [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data. | |
| ## Intended Usage | |
| Calibration and end-to-end verification of the beamforming/reconstruction pipeline (point-target resolution, cyst contrast). Phantom tier (×1). | |
| ## Dataset Characterization | |
| - **Data Collection Method:** phantom — tissue-mimicking phantom (Gammex 403GS LE, Gammex Inc., Middleton, WI, USA), acquired on the same scanner/probe as the in-vivo collection for calibration. | |
| - **Labeling Method:** N/A (calibration target; known phantom geometry). | |
| - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array probe, 0.30 mm pitch; sector scan, 180 transmit beams steered over ±45.13° (≈90.25° FOV), one image line per transmit; IQ demodulated at 3.44 MHz. | |
| ## Processing the Dataset | |
| The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea). | |
| `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command: | |
| ```bash | |
| zea process \ | |
| --dataset hf://nvidia/OpenH-RF/technion/phantom/data/ph.hdf5 \ | |
| --config hf://nvidia/OpenH-RF/technion/phantom/pipeline.yaml \ | |
| --n-frames 1 | |
| ``` | |
| Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/phantom/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF). | |
| ## Dataset Format | |
| [zea v0.1.4](https://github.com/tue-bmd/zea) | |
| zea file format, a single HDF5 file `data/ph.hdf5`. Source complex samples repackaged to `float32` I/Q (`n_ch = 2`), values verbatim. Carries `metadata/subject/{id=ph, type=phantom}`, `metadata/credit`, probe model (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`). ("phantom" is recorded only as `subject.type`, not as an anatomy or label.) | |
| ## Dataset Quantification | |
| **Current OpenH-RF release:** 1 HDF5 file; 659.95 MB (659,947,520 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes. | |
| - **Frames / acquisitions:** 12 frames · 1 acquisition. | |
| - **Stored HDF5 size:** 659.95 MB (659,947,520 bytes). | |
| | Field | Shape | dtype | Units | Description | | |
| |---|---|---|---|---| | |
| | `data/raw_data` | `(12, 180, 696, 64, 2)` | float32 | a.u. | pre-BF channel IQ: frames × tx-lines × axial × elements × {I, Q} | | |
| | `scan/sampling_frequency` | scalar | float32 | Hz | 3.333 MHz | | |
| | `scan/center_frequency`, `demodulation_frequency` | scalar | float32 | Hz | 3.44 MHz | | |
| | `scan/sound_speed` | scalar | float32 | m/s | 1540 | | |
| | `scan/polar_angles` | `(180,)` | float32 | rad | ±45.13° steered lines | | |
| | `probe/probe_geometry` | `(64, 3)` | float32 | m | element positions, 0.30 mm pitch | | |
| ## Subject Metadata | |
| N/A — inanimate phantom (GAMMEX 403GS LE); `subject.type = phantom`. | |
| ## Data Validation | |
| `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline` in `pipeline.yaml` (delay-and-sum on a polar scanline grid → envelope → normalization → log compression → sector scan conversion). | |
| Reference output: `bmode.png` — frame 6 of `data/ph.hdf5`, shown above: resolvable point targets and a well-defined anechoic cyst at ~65 mm. | |
| ## Known Issues | |
| - Same scan scheme and probe as the in-vivo bladder collection (GE tissue-harmonic); acquired as its calibration reference. GAMMEX 403GS LE. | |
| ## Ethical Considerations | |
| None — inanimate phantom, no human or animal subjects. | |