| # Per-acquisition reconstruction parameters, shared by every folder's | |
| # reconstruct.py. For each acquisition: | |
| # pipeline -- which reconstruction to use: | |
| # scanline (focused linear FI, per-beam), | |
| # sector (phased/steered focused, pipeline_sector.yaml), | |
| # iq (baseband IQ, pipeline_iq.yaml), | |
| # compound (non-focused linear, pipeline.yaml). | |
| # zlims/xlims -- display window in mm (framing only). | |
| # dynamic_range -- display dynamic range in dB (default [-60, 0]). | |
| # refocus -- if true, also emit a REFoCUS variant (<name>_zea_refocus_bmode.png). | |
| # REFoCUS (Bottenus 2018) inverts the transmit-encoding matrix to | |
| # recover the multistatic (full-matrix-capture) dataset before DAS. | |
| # Enabled for every acquisition with enough encoded transmits to make | |
| # the inversion well posed (>= 8 transmit events). reconstruct.py picks | |
| # the polar pipeline_refocus_sector.yaml for `sector` acquisitions and | |
| # the linear/cartesian pipeline_refocus.yaml for everything else. | |
| # NOT enabled where REFoCUS is ill-posed or undefined: | |
| # * single/few-transmit acquisitions (plane-wave tracking with | |
| # n_tx=1, PICMUS with 5 angles), | |
| # * synthetic transmit aperture (STA) acquisitions, which are | |
| # already multistatic (nothing to decode). | |
| # A_cardiac | |
| Verasonics_P2-4_apical_four_chamber_subject_1: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 110] | |
| Verasonics_P2-4_parasternal_long_subject_1: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 110] | |
| # B_carotid | |
| L7_FI_carotid_cross_1: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_carotid_cross_2: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_carotid_cross_sub_2: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| # C_verasonics_phantom | |
| FI_P4_cysts_center: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 115] | |
| FI_P4_point_scatterers: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 115] | |
| L7_CPWC_193328: | |
| pipeline: compound | |
| refocus: true | |
| zlims: [0, 50] | |
| xlims: [-20, 20] | |
| L7_CPWC_TheGB: | |
| pipeline: compound | |
| refocus: true | |
| zlims: [3, 45] | |
| xlims: [-20, 20] | |
| L7_DW_TheGB: | |
| pipeline: compound | |
| refocus: true | |
| zlims: [3, 50] | |
| xlims: [-20, 20] | |
| L7_FI_IUS2018: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_TheGB: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_Verasonics: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_Verasonics_CIRS: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| L7_FI_Verasonics_CIRS_points: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-19, 19] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| L7_STA_TheGB: | |
| pipeline: compound | |
| zlims: [3, 45] | |
| xlims: [-20, 20] | |
| P4_FI_121444_45mm_focus: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 58] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| STAI_UFF_CIRS_phantom: | |
| pipeline: compound | |
| zlims: [10, 80] | |
| xlims: [-15, 15] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| experimental_STAI_dynamic_range: | |
| pipeline: compound | |
| zlims: [3, 55] | |
| xlims: [-19, 19] | |
| # STA (n_tx == n_el == 128, already multistatic -> REFoCUS N/A) | |
| experimental_dynamic_range_phantom: | |
| pipeline: compound | |
| zlims: [3, 58] | |
| xlims: [-19, 19] | |
| # D_alpinion_phantom | |
| Alpinion_L3-8_CPWC_hyperechoic_scatterers: | |
| pipeline: compound | |
| refocus: true | |
| zlims: [3, 55] | |
| xlims: [-19, 19] | |
| Alpinion_L3-8_CPWC_hypoechoic: | |
| pipeline: compound | |
| refocus: true | |
| zlims: [5, 50] | |
| xlims: [-19, 19] | |
| Alpinion_L3-8_FI_hyperechoic_scatterers: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [3, 55] | |
| xlims: [-19, 19] | |
| Alpinion_L3-8_FI_hypoechoic: | |
| pipeline: scanline | |
| refocus: true | |
| zlims: [0, 60] | |
| xlims: [-19, 19] | |
| dynamic_range: [-50, 0] | |
| # E_simulation | |
| # Single plane wave (n_tx=1) -> REFoCUS N/A | |
| FieldII_CPWC_point_scatterers_res_v2: | |
| pipeline: compound | |
| zlims: [35, 42] | |
| xlims: [-3, 3] | |
| # Single plane wave (n_tx=1) -> REFoCUS N/A | |
| FieldII_CPWC_simulation_v2: | |
| pipeline: compound | |
| zlims: [3, 45] | |
| xlims: [-20, 20] | |
| FieldII_P4_point_scatterers: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 110] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| FieldII_STAI_dynamic_range: | |
| pipeline: compound | |
| zlims: [5, 55] | |
| xlims: [-20, 20] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| FieldII_STAI_simulated_dynamic_range: | |
| pipeline: compound | |
| zlims: [5, 55] | |
| xlims: [-20, 20] | |
| # STA (already multistatic -> REFoCUS N/A) | |
| FieldII_STAI_uniform_fov: | |
| pipeline: compound | |
| zlims: [1, 55] | |
| xlims: [-20, 20] | |
| FieldII_speckle_DMASsimulation300000pts: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 60] | |
| xlims: [-14, 14] | |
| # Baseband IQ, only 5 plane-wave angles -> REFoCUS N/A | |
| PICMUS_numerical_calib_v2: | |
| pipeline: iq | |
| zlims: [5, 50] | |
| xlims: [-19, 19] | |
| speckle_sim_FI_P4_probe_apod_1_speckle_long_many_angles: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 120] | |
| speckle_sim_FI_P4_probe_apod_2_speckle_long_many_angles: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 120] | |
| speckle_sim_FI_P4_probe_apod_3_speckle_long_many_angles: | |
| pipeline: sector | |
| refocus: true | |
| zlims: [1, 120] | |
| # F_motion | |
| # Plane-wave tracking (n_tx=1 per frame) -> REFoCUS N/A | |
| ARFI_dataset: | |
| pipeline: compound | |
| zlims: [1, 40] | |
| xlims: [-19, 19] | |
| SWE_L7_type_I: | |
| pipeline: compound | |
| zlims: [1, 40] | |
| xlims: [-19, 19] | |
| SWE_L7_type_III: | |
| pipeline: compound | |
| zlims: [1, 40] | |
| xlims: [-19, 19] | |
| SWE_L7_type_IV: | |
| pipeline: compound | |
| zlims: [1, 40] | |
| xlims: [-19, 19] | |