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nvidia

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OpenH-RF

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Two unrelated metadata fixes, one per folder group. The h5_diff report for each is at the bottom.

1. metadata/annotations/anatomy is missing (164 files)

Adds anatomy = "heart" to the in-vivo echocardiography files in data/Fundamental/ and data/Harmonic/.

Source: the README describes transthoracic echocardiography acquired to visualise the left atrial appendage, with standard cardiac views (apical two/four chamber, parasternal short/long axis, subxiphoid). The label names the organ imaged; the appendage was the clinical target. This matches how the rest of the corpus labels cardiac scans.

2. data/CIRS_validation/CIRS_fundamental.hdf5 says subject/type = in_vivo (1 file)

Changes it to phantom. The folder and file name indicate a CIRS phantom scan used for validation, but the file carries the same subject/type as the 164 patient files, so any analysis that groups by subject type counts it as a patient acquisition. The README does not mention this file.

Files changed: 165. Only metadata/annotations/anatomy and metadata/subject/type were written, raw_data and all other metadata are untouched.

Diff, anatomy annotation:

vanderbilt/data/Fundamental/118420_1_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
vanderbilt/data/Fundamental/118420_2_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
vanderbilt/data/Fundamental/118420_3_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
vanderbilt/data/Fundamental/126438_1_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
vanderbilt/data/Fundamental/126438_2_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
vanderbilt/data/Fundamental/126987_1_Focused_Uncoded_TX.hdf5: differs (main)
  + metadata/annotations: (group)
  + metadata/annotations/anatomy: 'heart'
... (158 more files, each the same)

Diff, CIRS subject type:

vanderbilt/data/CIRS_validation/CIRS_fundamental.hdf5: differs (main)
  ~ metadata/subject/type: 'in_vivo' -> 'phantom'

This looks great to me! Thank you Oisin!

Thanks!