stanford-murine: add hero and main images, sync card and pipelines with GitHub

#78
by tristan-deep - opened

Syncs the stanford-murine card and pipelines on the Hub with GitHub.

  • README.md: hero image with an italic caption under the title; Processing now leads with a zea process --track command; Data Validation rewritten; the "Scripts and Paths" section, which described the contributor's own repository, is removed.
  • pipeline_multifocal.yaml, pipeline_hadamard.yaml, pipeline_synthetic_aperture.yaml: the fir_filter step is removed and dynamic_range: [-60, 0] added, so zea process can run them straight from the Hub. The probe-dependent FIR now lives in reconstruct.py, which reads these same files.
  • assets/hero.png, assets/main.png: the hero figure (Rat3 liver over the ATS 549 phantom) and the main image.

The reconstruct.py changes in the same GitHub PR aren't hosted on the Hub, so they aren't part of this PR. reconstruct.py loads the pipelines from the Hub, so this PR and the GitHub PR should be merged together.

GitHub PR:

Files changed: 6.

~ stanford-murine/README.md
~ stanford-murine/pipeline_hadamard.yaml
~ stanford-murine/pipeline_multifocal.yaml
~ stanford-murine/pipeline_synthetic_aperture.yaml
+ stanford-murine/assets/hero.png
+ stanford-murine/assets/main.png
Ready to merge
This branch is ready to get merged automatically.

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