Datasets:

open-athena
/

cds-bench

id stringlengths 17 39	instance_id stringlengths 12 34	task_id stringclasses 84 values	variant stringclasses 1 value	prompt stringlengths 601 4.41k	answer stringlengths 1 927	output_format stringclasses 2 values	inputs_json stringlengths 43 772
dna.reverse_complement/01/easy	dna.reverse_complement/01	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGAGCTGGCGGCTGCCGTTCGACGACTTAACGCTTTCCAGGTGA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G. Compl...	TCACCTGGAAAGCGTTAAGTCGTCGAACGGCAGCCGCCAGCTCAT	scalar	{"cds":"ATGAGCTGGCGGCTGCCGTTCGACGACTTAACGCTTTCCAGGTGA"}
dna.reverse_complement/02/easy	dna.reverse_complement/02	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGTCATTTTGCAACTGACGTTGGAACTGAACATCCTGCAATCTGCCGCTTCCGCCGGGGCGTAG" } ``` ## Reference material ### DNA reverse complement DNA complementary bases a...	CTACGCCCCGGCGGAAGCGGCAGATTGCAGGATGTTCAGTTCCAACGTCAGTTGCAAAATGACCAT	scalar	{"cds":"ATGGTCATTTTGCAACTGACGTTGGAACTGAACATCCTGCAATCTGCCGCTTCCGCCGGGGCGTAG"}
dna.reverse_complement/03/easy	dna.reverse_complement/03	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GTGGTGCTGGACGAGCACGTCCGTCCGCTGTCGGAGCGGCTCTGA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G. Compl...	TCAGAGCCGCTCCGACAGCGGACGGACGTGCTCGTCCAGCACCAC	scalar	{"cds":"GTGGTGCTGGACGAGCACGTCCGTCCGCTGTCGGAGCGGCTCTGA"}
dna.reverse_complement/04/easy	dna.reverse_complement/04	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCCTTCCGATATGGCGTTCGACAACACCACCGTCGCACTCAACCTGTAG" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G....	CTACAGGTTGAGTGCGACGGTGGTGTTGTCGAACGCCATATCGGAAGGCAT	scalar	{"cds":"ATGCCTTCCGATATGGCGTTCGACAACACCACCGTCGCACTCAACCTGTAG"}
dna.reverse_complement/05/easy	dna.reverse_complement/05	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGTCGCCGAGCCGGCCGGTCCGCCGCGGGTCTATCGATTCTTCCCCGGCGCGTGA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T an...	TCACGCGCCGGGGAAGAATCGATAGACCCGCGGCGGACCGGCCGGCTCGGCGACCAT	scalar	{"cds":"ATGGTCGCCGAGCCGGCCGGTCCGCCGCGGGTCTATCGATTCTTCCCCGGCGCGTGA"}
dna.reverse_complement/06/easy	dna.reverse_complement/06	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGTTATAGAGTTTGAAGACGTTTGTAAGAAGTACTAA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G. Complement ...	TTAGTACTTCTTACAAACGTCTTCAAACTCTATAACCAT	scalar	{"cds":"ATGGTTATAGAGTTTGAAGACGTTTGTAAGAAGTACTAA"}
dna.reverse_complement/07/easy	dna.reverse_complement/07	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "TTGGATGCAACTTATCAACATCATTCGATTCCACATGCTAGTGTCACTTAA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G....	TTAAGTGACACTAGCATGTGGAATCGAATGATGTTGATAAGTTGCATCCAA	scalar	{"cds":"TTGGATGCAACTTATCAACATCATTCGATTCCACATGCTAGTGTCACTTAA"}
dna.reverse_complement/08/easy	dna.reverse_complement/08	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGGCGACACGCCAAGGACCGACCAGTTGTTGGTCCTGCTCCTGTAA" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G. Co...	TTACAGGAGCAGGACCAACAACTGGTCGGTCCTTGGCGTGTCGCCCAT	scalar	{"cds":"ATGGGCGACACGCCAAGGACCGACCAGTTGTTGGTCCTGCTCCTGTAA"}
dna.reverse_complement/09/easy	dna.reverse_complement/09	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGCGGGTTCGCGCGGCAGCGCCTTTCCGGATGTCTAG" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are A↔T and C↔G. Complement ...	CTAGACATCCGGAAAGGCGCTGCCGCGCGAACCCGCCAT	scalar	{"cds":"ATGGCGGGTTCGCGCGGCAGCGCCTTTCCGGATGTCTAG"}
dna.reverse_complement/10/easy	dna.reverse_complement/10	dna.reverse_complement	easy	## Task Return the reverse complement of the CDS, written 5′→3′. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCCTTTTTTTCTGCTGATCAGAGCGGTTGCTTTTATTGAATACGAACTGTCGATCGGCTAG" } ``` ## Reference material ### DNA reverse complement DNA complementary bases are ...	CTAGCCGATCGACAGTTCGTATTCAATAAAAGCAACCGCTCTGATCAGCAGAAAAAAAGGCAT	scalar	{"cds":"ATGCCTTTTTTTCTGCTGATCAGAGCGGTTGCTTTTATTGAATACGAACTGTCGATCGGCTAG"}
dna.transcribe/01/easy	dna.transcribe/01	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GTGGTGCTGTTCCGCTACGGCGCCGGCATGCAGCCCGCCTGA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA to RNA ...	GUGGUGCUGUUCCGCUACGGCGCCGGCAUGCAGCCCGCCUGA	scalar	{"cds":"GTGGTGCTGTTCCGCTACGGCGCCGGCATGCAGCCCGCCTGA"}
dna.transcribe/02/easy	dna.transcribe/02	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCATGCAACCATTTCGGCCATTATTGAAACGCTCAAGTATCTAGATTTGTAA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding ...	AUGCAUGCAACCAUUUCGGCCAUUAUUGAAACGCUCAAGUAUCUAGAUUUGUAA	scalar	{"cds":"ATGCATGCAACCATTTCGGCCATTATTGAAACGCTCAAGTATCTAGATTTGTAA"}
dna.transcribe/03/easy	dna.transcribe/03	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GTGGAAAATACTGGTGTTAACCCTCCTTATGTAAACCTTTTTCGAACCTAA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA...	GUGGAAAAUACUGGUGUUAACCCUCCUUAUGUAAACCUUUUUCGAACCUAA	scalar	{"cds":"GTGGAAAATACTGGTGTTAACCCTCCTTATGTAAACCTTTTTCGAACCTAA"}
dna.transcribe/04/easy	dna.transcribe/04	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGCTCAGGTGCTCAAGGTTCCACCCCTGAGTCCCGCAAACTGA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA to RN...	AUGGCUCAGGUGCUCAAGGUUCCACCCCUGAGUCCCGCAAACUGA	scalar	{"cds":"ATGGCTCAGGTGCTCAAGGTTCCACCCCTGAGTCCCGCAAACTGA"}
dna.transcribe/05/easy	dna.transcribe/05	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCGGGCCAAGACCTGCCGCACCGACAAGTCCTTCGCCCGCGCGCTCGGCGTCTGA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Codi...	AUGCGGGCCAAGACCUGCCGCACCGACAAGUCCUUCGCCCGCGCGCUCGGCGUCUGA	scalar	{"cds":"ATGCGGGCCAAGACCTGCCGCACCGACAAGTCCTTCGCCCGCGCGCTCGGCGTCTGA"}
dna.transcribe/06/easy	dna.transcribe/06	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGATGCCGATGTTGCCCGTGACTCGAACGTATAA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA to RNA The su...	AUGGAUGCCGAUGUUGCCCGUGACUCGAACGUAUAA	scalar	{"cds":"ATGGATGCCGATGTTGCCCGTGACTCGAACGTATAA"}
dna.transcribe/07/easy	dna.transcribe/07	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGATGGCACCGGAGGAATCCCTGCTCACCGTTGTCACCCATATTGACTGCAAAGCCCTGGGTTAG" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ...	AUGAUGGCACCGGAGGAAUCCCUGCUCACCGUUGUCACCCAUAUUGACUGCAAAGCCCUGGGUUAG	scalar	{"cds":"ATGATGGCACCGGAGGAATCCCTGCTCACCGTTGTCACCCATATTGACTGCAAAGCCCTGGGTTAG"}
dna.transcribe/08/easy	dna.transcribe/08	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGATGGCCGACGCGCGCATGATGGCCTCCCATAACTTCGATTTCTAG" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA to...	AUGAUGGCCGACGCGCGCAUGAUGGCCUCCCAUAACUUCGAUUUCUAG	scalar	{"cds":"ATGATGGCCGACGCGCGCATGATGGCCTCCCATAACTTCGATTTCTAG"}
dna.transcribe/09/easy	dna.transcribe/09	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GTGACTGTGCTGCCCATCGTGGATCTCATTTCCGCCAGGGCGCTGGCGCGGCCGGGCTACGACTAA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ...	GUGACUGUGCUGCCCAUCGUGGAUCUCAUUUCCGCCAGGGCGCUGGCGCGGCCGGGCUACGACUAA	scalar	{"cds":"GTGACTGTGCTGCCCATCGTGGATCTCATTTCCGCCAGGGCGCTGGCGCGGCCGGGCTACGACTAA"}
dna.transcribe/10/easy	dna.transcribe/10	dna.transcribe	easy	## Task Return the coding RNA transcribed from this CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GTGGGCAGCCACCCCCGCCCGGTCGGCTGGTGGTAA" } ``` ## Rules - Retain the entire CDS, including the stop codon. ## Reference material ### Coding DNA to RNA The su...	GUGGGCAGCCACCCCCGCCCGGUCGGCUGGUGGUAA	scalar	{"cds":"GTGGGCAGCCACCCCCGCCCGGTCGGCTGGTGGTAA"}
cds.translate/01/easy	cds.translate/01	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGAACTGGAACCGCTGGAAGAAGGCAGCGGCGAAAGCACCGAAGCAGCCCAATGGCAGGTTGACTGA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-fr...	MELEPLEEGSGESTEAAQWQVD	scalar	{"cds":"ATGGAACTGGAACCGCTGGAAGAAGGCAGCGGCGAAAGCACCGAAGCAGCCCAATGGCAGGTTGACTGA"}
cds.translate/02/easy	cds.translate/02	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCAAAGAATTATTGATGCGTATAAAAACGGACTTTCTGCATGCGACAATTCGATCTGCCCTGTTTAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-fr...	MQRIIDAYKNGLSACDNSICPV	scalar	{"cds":"ATGCAAAGAATTATTGATGCGTATAAAAACGGACTTTCTGCATGCGACAATTCGATCTGCCCTGTTTAA"}
cds.translate/03/easy	cds.translate/03	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCACGGTGTTGACTTCAGTCTTGGTGCTGTGATGGGCAGTGCGCTGATGTTCTAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame stop and...	MHGVDFSLGAVMGSALMF	scalar	{"cds":"ATGCACGGTGTTGACTTCAGTCTTGGTGCTGTGATGGGCAGTGCGCTGATGTTCTAA"}
cds.translate/04/easy	cds.translate/04	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGCTTGAAATCGACATCGGCGTCATCAACGAGTTGATCAGGCATACCAATTAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame stop and om...	MLEIDIGVINELIRHTN	scalar	{"cds":"ATGCTTGAAATCGACATCGGCGTCATCAACGAGTTGATCAGGCATACCAATTAA"}
cds.translate/05/easy	cds.translate/05	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGGTGACTTGGATGCCTACTACCCCCAATAG" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame stop and omit its symbol. ## Re...	MGDLDAYYPQ	scalar	{"cds":"ATGGGTGACTTGGATGCCTACTACCCCCAATAG"}
cds.translate/06/easy	cds.translate/06	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGCTAAGGCCTTTGTTGACTCTGATCTTCGCGATCCATAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame stop and omit its symbo...	MAKAFVDSDLRDP	scalar	{"cds":"ATGGCTAAGGCCTTTGTTGACTCTGATCTTCGCGATCCATAA"}
cds.translate/07/easy	cds.translate/07	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGGCACCCGGGTCCTCCGACGGAGCACCTTCCAGCGCCTAGAGGCCCTGGAGCACGGGATGGAATAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-fr...	MGTRVLRRSTFQRLEALEHGME	scalar	{"cds":"ATGGGCACCCGGGTCCTCCGACGGAGCACCTTCCAGCGCCTAGAGGCCCTGGAGCACGGGATGGAATAA"}
cds.translate/08/easy	cds.translate/08	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGTTCGCGAGCGTCTCGACAACGGCGCCGCGCCGGACGGCAACTCTGGACTGGGCAGCGCCCTGTAA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-fr...	MVRERLDNGAAPDGNSGLGSAL	scalar	{"cds":"ATGGTTCGCGAGCGTCTCGACAACGGCGCCGCGCCGGACGGCAACTCTGGACTGGGCAGCGCCCTGTAA"}
cds.translate/09/easy	cds.translate/09	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGAAAGAAGGACTGGAAGAAGTAAAGATTGAGATGAACCTTGATAGAGGGCTTTCCCTCATGTGA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame...	MKEGLEEVKIEMNLDRGLSLM	scalar	{"cds":"ATGAAAGAAGGACTGGAAGAAGTAAAGATTGAGATGAACCTTGATAGAGGGCTTTCCCTCATGTGA"}
cds.translate/10/easy	cds.translate/10	cds.translate	easy	## Task Translate this CDS using NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGAAAGAACGCCGTTTTAAAACCGGCACACCTAAATGA" } ``` ## Rules - Use the annotated first codon as the initiator. Stop at the first in-frame stop and omit its symbol. ...	MKERRFKTGTPK	scalar	{"cds":"ATGAAAGAACGCCGTTTTAAAACCGGCACACCTAAATGA"}
cds.validate/01/easy	cds.validate/01	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGTGGCGCGCCCTGTGCGAAGAACAATCCTCCTGA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or its length is not divisi...	[]	scalar	{"cds":"ATGTGGCGCGCCCTGTGCGAAGAACAATCCTCCTGA"}
cds.validate/02/easy	cds.validate/02	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GCTAAAAAAGACTTTACCGATCAAATTGAGTTACTCTTGCTATTTTAG" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or its length i...	["invalid_start"]	scalar	{"cds":"GCTAAAAAAGACTTTACCGATCAAATTGAGTTACTCTTGCTATTTTAG"}
cds.validate/03/easy	cds.validate/03	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGATAGCTAATTACTGCTTTTAGTTCAACAACACCTCCTTCGTGCCTGTGTAACCTTTGTAGAATAA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 ...	["internal_stop"]	scalar	{"cds":"ATGGATAGCTAATTACTGCTTTTAGTTCAACAACACCTCCTTCGTGCCTGTGTAACCTTTGTAGAATAA"}
cds.validate/04/easy	cds.validate/04	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGAAGCGGAAGGTGCTGCAGAACAACCCCGAGCATGACGCCATGGCCCGTCTCGACGCA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or ...	["missing_terminal_stop"]	scalar	{"cds":"ATGAAGCGGAAGGTGCTGCAGAACAACCCCGAGCATGACGCCATGGCCCGTCTCGACGCA"}
cds.validate/05/easy	cds.validate/05	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GCTAACGCGTAATCGATGGGCCACCTCGGCCGCGGCACCGCA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or its length is not ...	["internal_stop","invalid_start","missing_terminal_stop"]	scalar	{"cds":"GCTAACGCGTAATCGATGGGCCACCTCGGCCGCGGCACCGCA"}
cds.validate/06/easy	cds.validate/06	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGATATTACAGAAGTCATGGCCAATGAAAATCCGTGCAAATGGGTTGCGTAA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or its le...	[]	scalar	{"cds":"ATGGATATTACAGAAGTCATGGCCAATGAAAATCCGTGCAAATGGGTTGCGTAA"}
cds.validate/07/easy	cds.validate/07	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GCTGCGCCGGTGACCCCGGTCCGCCGGCACCTGGTGTTTTTGCTGACCCTGAACTCCGGCGTGTAA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bas...	["invalid_start"]	scalar	{"cds":"GCTGCGCCGGTGACCCCGGTCCGCCGGCACCTGGTGTTTTTGCTGACCCTGAACTCCGGCGTGTAA"}
cds.validate/08/easy	cds.validate/08	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGACTCGTAAGTGACCGTGCTGCCCGTCGCCCCACGCTGA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or its length is not ...	["internal_stop"]	scalar	{"cds":"ATGGACTCGTAAGTGACCGTGCTGCCCGTCGCCCCACGCTGA"}
cds.validate/09/easy	cds.validate/09	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "ATGGGGCCGGTACCCTGGCAGGACGACCGCAGCGGCGCCGCCGGCGCGAACTTCGCCGCA" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or ...	["missing_terminal_stop"]	scalar	{"cds":"ATGGGGCCGGTACCCTGGCAGGACGACCGCAGCGGCGCCGCCGGCGCGAACTTCGCCGCA"}
cds.validate/10/easy	cds.validate/10	cds.validate	easy	## Task Validate this complete CDS under NCBI 11. Return all violation codes. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds": "GCTATCGCGTAATGGATCCCGACCTCGGGCTTCGAAGCGACCAGCCGGTTCGCGGCCGCAC" } ``` ## Rules - Report `bad_length` if the DNA has fewer than 6 bases or...	["bad_length","internal_stop","invalid_start","missing_terminal_stop"]	scalar	{"cds":"GCTATCGCGTAATGGATCCCGACCTCGGGCTTCGAAGCGACCAGCCGGTTCGCGGCCGCAC"}
coords.nt_to_codon/01/easy	coords.nt_to_codon/01	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"GTG","codon_index":1,"offset":2}	json	{"cds":"GTGGGCCATAAGTCCGATCCGGTCATCGAGGCGCCGTGA","nt_position":3}
coords.nt_to_codon/02/easy	coords.nt_to_codon/02	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"GGG","codon_index":7,"offset":1}	json	{"cds":"ATGGAAACCCTTATGTTGGGGGAAGACTATGGTTAA","nt_position":20}
coords.nt_to_codon/03/easy	coords.nt_to_codon/03	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"TAC","codon_index":6,"offset":1}	json	{"cds":"ATGGCGCCGGACGGCTACCGCTGTGAAGCACTCCAAGGGTGA","nt_position":17}
coords.nt_to_codon/04/easy	coords.nt_to_codon/04	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"CAG","codon_index":10,"offset":1}	json	{"cds":"ATGACGGGGCATGTTGGATCGCTCGACCAGGAGGCCATCGGCCTGAAGGCATGA","nt_position":29}
coords.nt_to_codon/05/easy	coords.nt_to_codon/05	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"GTT","codon_index":4,"offset":2}	json	{"cds":"ATGATCTCTGTTGGCAACTGCACGGGGCTTGGCGAGCGTGGTTACCTCACTGCATCATAA","nt_position":12}
coords.nt_to_codon/06/easy	coords.nt_to_codon/06	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"CTG","codon_index":11,"offset":2}	json	{"cds":"GTGGCCGCCACCGACGAGGCGCTGGTGTATCTGTGA","nt_position":33}
coords.nt_to_codon/07/easy	coords.nt_to_codon/07	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"ACG","codon_index":10,"offset":0}	json	{"cds":"ATGTCCAATGGTACCCCCACCGCCAAGACGATGTAA","nt_position":28}
coords.nt_to_codon/08/easy	coords.nt_to_codon/08	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"GTG","codon_index":7,"offset":2}	json	{"cds":"ATGAAAATACTCATTCCCGTGGATGAAGTAGAAATTTCTGCCCTTGAAAAGTGA","nt_position":21}
coords.nt_to_codon/09/easy	coords.nt_to_codon/09	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"CAA","codon_index":10,"offset":1}	json	{"cds":"ATGATCGTCCTCGCCGCCCGCACCCTCCAAGGCAAGGTCCTGCCGGTGGTCGCCTTCAAGGGGGAGTGA","nt_position":29}
coords.nt_to_codon/10/easy	coords.nt_to_codon/10	coords.nt_to_codon	easy	## Task For `nt_position`, report the containing codon, its index in the CDS, and the position of that nucleotide within the codon. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": ...	{"codon":"TTC","codon_index":13,"offset":0}	json	{"cds":"ATGGAGCTCAATGCGGCGCATGATCACTTCGCTCTGTTCATCGACTAA","nt_position":37}
coords.aa_to_nt/01/easy	coords.aa_to_nt/01	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGAGCGCCATCGTCCTGTTCGTCAACGAACTGGAATGA", ...	[7,15]	scalar	{"aa_interval":[3,5],"cds":"ATGAGCGCCATCGTCCTGTTCGTCAACGAACTGGAATGA"}
coords.aa_to_nt/02/easy	coords.aa_to_nt/02	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGACCATCGTTCACATCTGCGACTTAGGGTTTCGCGCCGAA...	[37,42]	scalar	{"aa_interval":[13,14],"cds":"ATGACCATCGTTCACATCTGCGACTTAGGGTTTCGCGCCGAAAAAGGACGCCGCGGCGTGCTGGAATGA"}
coords.aa_to_nt/03/easy	coords.aa_to_nt/03	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGGTAGTGCTGTGCAGAATTCCCGAGCGCCTGTACGGTGCC...	[10,15]	scalar	{"aa_interval":[4,5],"cds":"ATGGTAGTGCTGTGCAGAATTCCCGAGCGCCTGTACGGTGCCGCTGCCGCCACCTGGTGA"}
coords.aa_to_nt/04/easy	coords.aa_to_nt/04	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGGTATTATTTAGTCAAAGACGTTTCGGACTGTTTTAA", ...	[4,9]	scalar	{"aa_interval":[2,3],"cds":"ATGGTATTATTTAGTCAAAGACGTTTCGGACTGTTTTAA"}
coords.aa_to_nt/05/easy	coords.aa_to_nt/05	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGGTGAAGCGGATGTCGGTCGACAATCGCTAG", "aa_...	[22,30]	scalar	{"aa_interval":[8,10],"cds":"ATGGTGAAGCGGATGTCGGTCGACAATCGCTAG"}
coords.aa_to_nt/06/easy	coords.aa_to_nt/06	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "TTGGCCCTGGCGCAACTCATGGGGGCAGTGGCGACCACGGGC...	[31,36]	scalar	{"aa_interval":[11,12],"cds":"TTGGCCCTGGCGCAACTCATGGGGGCAGTGGCGACCACGGGCCGGCGCTGA"}
coords.aa_to_nt/07/easy	coords.aa_to_nt/07	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGCTGGAGGAGGAGGGTGGTGCCGCGCAGGCCGGCCAGTTC...	[7,15]	scalar	{"aa_interval":[3,5],"cds":"ATGCTGGAGGAGGAGGGTGGTGCCGCGCAGGCCGGCCAGTTCCACTCCGAGCGGGCCTGA"}
coords.aa_to_nt/08/easy	coords.aa_to_nt/08	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGGATTTAATTAATATGGGCCTCTGCCGGCGCCAACTGATG...	[28,39]	scalar	{"aa_interval":[10,13],"cds":"ATGGATTTAATTAATATGGGCCTCTGCCGGCGCCAACTGATGTGA"}
coords.aa_to_nt/09/easy	coords.aa_to_nt/09	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGTGGGTTCCTGAGAGGGATGGTGATTACGGTGGTGCACCG...	[16,21]	scalar	{"aa_interval":[6,7],"cds":"ATGTGGGTTCCTGAGAGGGATGGTGATTACGGTGGTGCACCGAAAGCAGAACTTTCCACAGCCCTTTAG"}
coords.aa_to_nt/10/easy	coords.aa_to_nt/10	coords.aa_to_nt	easy	## Task Find the DNA interval that encodes the requested protein interval `aa_interval`. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. ```json { "cds": "ATGCGCGATCGTTTACGTTTATCTAACGGTTCACAGTAA", ...	[25,33]	scalar	{"aa_interval":[9,11],"cds":"ATGCGCGATCGTTTACGTTTATCTAACGGTTCACAGTAA"}
variant.apply/01/easy	variant.apply/01	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGGAGGGTCCGGGGGAATTTCAATTGCTTTGAAAGAAGAATGA	scalar	{"cds":"ATGGAGCCGGGAGGAATTTCAATTGCTTTGAAAGAAGAATGA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.apply/02/easy	variant.apply/02	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGACACACTGGCCAAATCATAGTCTTGATGACACTTAA	scalar	{"cds":"ATGACAACTGGTCCAAATCATAGTCTTGATGACACTTAA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.apply/03/easy	variant.apply/03	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGGTTGGTGAGCTCCAGATGGAAAGAACTGGGGACTCGTGATTTAA	scalar	{"cds":"ATGGTTGAGCTCCCAGATGGAAAGAACTGGGGACTCGTGATTTAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.apply/04/easy	variant.apply/04	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGGTGCGGGGCCAGGCCGTCAAGTCCGGCCTGGGAAACGCCCATGGCTGA	scalar	{"cds":"ATGGTGGGGGCTCAGGCCGTCAAGTCCGGCCTGGGAAACGCCCATGGCTGA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.apply/05/easy	variant.apply/05	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGATCGGTGCGCGCGCAAGCGTCGCGCCGACGAGGCCCAAGCCGACTTGATCAAGGCGGGCGCCCTCTAA	scalar	{"cds":"ATGATCGCGCGGCGCAAGCGTCGCGCCGACGAGGCCCAAGCCGACTTGATCAAGGCGGGCGCCCTCTAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.apply/06/easy	variant.apply/06	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGTTCCGGCGAGTATTAGGTTTTATCTATGATGCGCTGCATGCGATGCTTACCTTAATTGCCGCATAA	scalar	{"cds":"ATGTTCGGCGAGGTATTAGGTTTTATCTATGATGCGCTGCATGCGATGCTTACCTTAATTGCCGCATAA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.apply/07/easy	variant.apply/07	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGCGTGGTCGTTTTTTGTACTTAGAAATGAACGTATCCATCTAGAGTTAGAGAAGTAA	scalar	{"cds":"ATGCGTCGTTTGTTTGTACTTAGAAATGAACGTATCCATCTAGAGTTAGAGAAGTAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.apply/08/easy	variant.apply/08	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGATCCCCCGAATGGGCGGCGTGCGCCTGGAATTCCTGGACTACGACAATTTCGGCTGA	scalar	{"cds":"ATGATCCCCGAGATGGGCGGCGTGCGCCTGGAATTCCTGGACTACGACAATTTCGGCTGA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.apply/09/easy	variant.apply/09	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	GTGTATGGTGTGCGCTGGACCTGCCCGAGGTGCCCGCCCCCGGCGGCGCGCGCTGGGCGTAG	scalar	{"cds":"GTGTATGTGCGCCTGGACCTGCCCGAGGTGCCCGCCCCCGGCGGCGCGCGCTGGGCGTAG","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.apply/10/easy	variant.apply/10	variant.apply	easy	## Task Apply the supplied DNA edits and return the edited CDS. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_base, last_base, new_text]`; an empty `new_text...	ATGGGCCTTAGTGGCTTCCTGACCAGTAAATCTCTCGCGTCCAGTGGCCGCTGCGTCTAG	scalar	{"cds":"ATGGGCTTAGTCGGCTTCCTGACCAGTAAATCTCTCGCGTCCAGTGGCCGCTGCGTCTAG","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.protein_effect/01/easy	variant.protein_effect/01	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	synonymous	scalar	{"cds":"ATGTCCTATCGGCTCGCTGTATTCGTCTCTTATGAAGTGTGA","replacement":[22,24,"TTT"]}
variant.protein_effect/02/easy	variant.protein_effect/02	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	missense	scalar	{"cds":"ATGGACGTGGACCTCTCCCCCTTCATCATGCGGGGCCACCCCGACTAA","replacement":[4,6,"AGA"]}
variant.protein_effect/03/easy	variant.protein_effect/03	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	stop_gained	scalar	{"cds":"ATGTCACATATATTAGCTGCTAATTATCCTTATAAACGTTAA","replacement":[16,18,"TGA"]}
variant.protein_effect/04/easy	variant.protein_effect/04	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	synonymous	scalar	{"cds":"ATGCGCATCCTCGGGCTCGAGGAATATCACATCCGGCCGCCGTGA","replacement":[28,30,"CAT"]}
variant.protein_effect/05/easy	variant.protein_effect/05	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	missense	scalar	{"cds":"ATGCTGCGTGTCGTGCCACTGTTCGCCTTGTGA","replacement":[13,15,"GAT"]}
variant.protein_effect/06/easy	variant.protein_effect/06	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	stop_gained	scalar	{"cds":"ATGCTAGTAACTGTCGGAATTGGTTTTAGTGGTTGGGTTGTTTAA","replacement":[34,36,"TGA"]}
variant.protein_effect/07/easy	variant.protein_effect/07	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	synonymous	scalar	{"cds":"ATGATTGTAAAAGGCCGAGAAATGAAATCCTGCCATCCCAATGATAATGGTTTTACACCAGTTTAA","replacement":[55,57,"ACT"]}
variant.protein_effect/08/easy	variant.protein_effect/08	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	missense	scalar	{"cds":"ATGGCCGAGCTGTTCGACAGTTCGGGCACCTACATGTGA","replacement":[4,6,"GTA"]}
variant.protein_effect/09/easy	variant.protein_effect/09	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	stop_gained	scalar	{"cds":"ATGTATGAGTGGCAACTCGACGTGTCGGGGGCTTTCCTGTTTCAGAACGTGCGCCTCTGA","replacement":[55,57,"TGA"]}
variant.protein_effect/10/easy	variant.protein_effect/10	variant.protein_effect	easy	## Task Classify the supplied CDS substitution as `synonymous`, `missense`, or `stop_gained` under NCBI genetic code 11. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. `replacement` is `[first_base,...	synonymous	scalar	{"cds":"ATGCACGTCTGCGCCAAGGCCGCCGCGTTCCCGTTCGCTATCCTGGAAGCCTGA","replacement":[37,39,"GCG"]}
variant.frame_status/01/easy	variant.frame_status/01	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":0},{"edit_index":2,"phase":2}],"final_phase":2}	json	{"cds":"GTGGAAGCGACAGACCAGGGCTGTGGCCCTGAACACCTTGTTTAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.frame_status/02/easy	variant.frame_status/02	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":1},{"edit_index":2,"phase":0}],"final_phase":0}	json	{"cds":"ATGGGTGGCACGCAGTCGGTCGATTTTCCCTGGGAAGCCAAGGTGTGA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.frame_status/03/easy	variant.frame_status/03	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":0},{"edit_index":2,"phase":2}],"final_phase":2}	json	{"cds":"ATGCACCACATGATTCATGCTTCCGGCGACGTCGACTGA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.frame_status/04/easy	variant.frame_status/04	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":1},{"edit_index":2,"phase":0}],"final_phase":0}	json	{"cds":"TTGGCCGTGGGGGTGGTCTACAAGCTCCTGGTCCAGGCCCTGATTTTTGAGGTCCTGGAGTAG","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.frame_status/05/easy	variant.frame_status/05	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":0},{"edit_index":2,"phase":2}],"final_phase":2}	json	{"cds":"ATGGTCAAGAACGAGAGTCCGGGTTTGCGCCAGTACTGGCAAGGCGCCAGAGATTTTTGA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.frame_status/06/easy	variant.frame_status/06	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":1},{"edit_index":2,"phase":0}],"final_phase":0}	json	{"cds":"ATGAATCAGAATACACAAGTTGGGTACCATAAAAAGTTTGGGTCTGACTAA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.frame_status/07/easy	variant.frame_status/07	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":0},{"edit_index":2,"phase":2}],"final_phase":2}	json	{"cds":"ATGACTACCGATAATAAGCTTGCCAGAAGCTTAGCGCAATAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.frame_status/08/easy	variant.frame_status/08	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":1},{"edit_index":2,"phase":0}],"final_phase":0}	json	{"cds":"ATGAGGATGGAGGGTGACCTCATCATGCCGGTTCCGTCGCTCATGCGCAGTGGCGAGAGGTGA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
variant.frame_status/09/easy	variant.frame_status/09	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":0},{"edit_index":2,"phase":2}],"final_phase":2}	json	{"cds":"ATGGAGAGGGTGCCCGTGGAGGCCCTGGAGCTTTCCGGCACCCTCTCCTTAGGGGGGGCCTAA","edits":[{"insert_after":6,"sequence":"GGT"},{"replace":[12,12,""]}]}
variant.frame_status/10/easy	variant.frame_status/10	variant.frame_status	easy	## Task Track the change in reading-frame phase after each insertion or deletion, and report the final phase. ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. Coordinates and intervals are 1-based and inclusive unless a rule states otherwise. In an edit object, `replace` is `[first_b...	{"edits":[{"edit_index":1,"phase":1},{"edit_index":2,"phase":0}],"final_phase":0}	json	{"cds":"ATGCTCATTCTGCTCCAGCGCCACTACATTGGCGTGGTGTCGTGA","edits":[{"insert_after":6,"sequence":"C"},{"replace":[12,12,""]}]}
cds.protein_equivalence/01/easy	cds.protein_equivalence/01	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGTACCTGCGCGTGGAAGACACCCTGGAAAACCCGGGTCTGAAGACCTACCGTCCCTTCTGCCTGTGA", "cds_b": "ATGTACCTGCGCGTGGAAGACACCCTGGAAAACCCGGGTCTGAAGACCTACCGTCCCTTCTGC...	true	scalar	{"cds_a":"ATGTACCTGCGCGTGGAAGACACCCTGGAAAACCCGGGTCTGAAGACCTACCGTCCCTTCTGCCTGTGA","cds_b":"ATGTACCTGCGCGTGGAAGACACCCTGGAAAACCCGGGTCTGAAGACCTACCGTCCCTTCTGCCTTTGA"}
cds.protein_equivalence/02/easy	cds.protein_equivalence/02	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGGTGGGGACGGCCAGCTATCGATTGCGTGCGTAA", "cds_b": "ATGGTGGGGACGCAAAGCTATCGATTGCGTGCGTAA" } ``` ## Rules - Translate both complete CDSs under NCBI...	false	scalar	{"cds_a":"ATGGTGGGGACGGCCAGCTATCGATTGCGTGCGTAA","cds_b":"ATGGTGGGGACGCAAAGCTATCGATTGCGTGCGTAA"}
cds.protein_equivalence/03/easy	cds.protein_equivalence/03	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGGCGAGCCTGTACTTCCTCGATGAATTTACCGGCGTCGAAATCACCTGA", "cds_b": "ATGGCGAGCCTGTACTTCCTCGACGAATTTACCGGCGTCGAAATCACCTGA" } ``` ## Rules - Translate...	true	scalar	{"cds_a":"ATGGCGAGCCTGTACTTCCTCGATGAATTTACCGGCGTCGAAATCACCTGA","cds_b":"ATGGCGAGCCTGTACTTCCTCGACGAATTTACCGGCGTCGAAATCACCTGA"}
cds.protein_equivalence/04/easy	cds.protein_equivalence/04	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGTATGTGGCATTTATTGTCAGTGTTGCTGTTGAAGTGTAA", "cds_b": "ATGTATCTTGCATTTATTGTCAGTGTTGCTGTTGAAGTGTAA" } ``` ## Rules - Translate both complete CDS...	false	scalar	{"cds_a":"ATGTATGTGGCATTTATTGTCAGTGTTGCTGTTGAAGTGTAA","cds_b":"ATGTATCTTGCATTTATTGTCAGTGTTGCTGTTGAAGTGTAA"}
cds.protein_equivalence/05/easy	cds.protein_equivalence/05	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGTTTCGCTTGACCGAGAGCTGCTACCTGGCGGCAGCGTCGGCCCTGGTCGAACAAGGCTACTGA", "cds_b": "ATGTTTCGCTTGACCGAGAGCTGCTACCTGGCGGCAGCGTCGGCCCTGGTCGAACAAGGCTATTGA...	true	scalar	{"cds_a":"ATGTTTCGCTTGACCGAGAGCTGCTACCTGGCGGCAGCGTCGGCCCTGGTCGAACAAGGCTACTGA","cds_b":"ATGTTTCGCTTGACCGAGAGCTGCTACCTGGCGGCAGCGTCGGCCCTGGTCGAACAAGGCTATTGA"}
cds.protein_equivalence/06/easy	cds.protein_equivalence/06	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "GTGTCCACCGCCTGGGGCAAACCGAAGAACCTCCAGCGGATCGACGGCGACGGACGCTGCTGA", "cds_b": "GTGTCCACCGCCTGGGGCAAACCGAAGAACTCACAGCGGATCGACGGCGACGGACGCTGCTGA" } ``...	false	scalar	{"cds_a":"GTGTCCACCGCCTGGGGCAAACCGAAGAACCTCCAGCGGATCGACGGCGACGGACGCTGCTGA","cds_b":"GTGTCCACCGCCTGGGGCAAACCGAAGAACTCACAGCGGATCGACGGCGACGGACGCTGCTGA"}
cds.protein_equivalence/07/easy	cds.protein_equivalence/07	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGTTCGACTGGGCCAAGACGCTGACCGGCTGA", "cds_b": "ATGTTCGACTGGGCAAAGACGCTGACCGGCTGA" } ``` ## Rules - Translate both complete CDSs under NCBI genet...	true	scalar	{"cds_a":"ATGTTCGACTGGGCCAAGACGCTGACCGGCTGA","cds_b":"ATGTTCGACTGGGCAAAGACGCTGACCGGCTGA"}
cds.protein_equivalence/08/easy	cds.protein_equivalence/08	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGGCGGAGGTGGAGGAGGAAGCCATCGTCCAGTAG", "cds_b": "ATGGCGGAGGTGGAGGAGGAAGCCACTGTCCAGTAG" } ``` ## Rules - Translate both complete CDSs under NCBI...	false	scalar	{"cds_a":"ATGGCGGAGGTGGAGGAGGAAGCCATCGTCCAGTAG","cds_b":"ATGGCGGAGGTGGAGGAGGAAGCCACTGTCCAGTAG"}
cds.protein_equivalence/09/easy	cds.protein_equivalence/09	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGGCCGGAGTCATGACTACTCTCACGCTGCTCCGCCTTTAA", "cds_b": "ATGGCCGGAGTCATGACTACTCTCACGCTGCTCCGCCTGTAA" } ``` ## Rules - Translate both complete CDS...	true	scalar	{"cds_a":"ATGGCCGGAGTCATGACTACTCTCACGCTGCTCCGCCTTTAA","cds_b":"ATGGCCGGAGTCATGACTACTCTCACGCTGCTCCGCCTGTAA"}
cds.protein_equivalence/10/easy	cds.protein_equivalence/10	cds.protein_equivalence	easy	## Task Do these two CDSs encode identical proteins under NCBI 11? ## Inputs DNA inputs are 5′→3′ coding strands. Ignore whitespace between bases. ```json { "cds_a": "ATGGCCATGATCCTCGGGATGCAACCCTTCAAGCGCGAAGACCCGTGA", "cds_b": "ATGGCCATGATCCTCGGGATGCAACCCTTCAAGGCGGAAGACCCGTGA" } ``` ## Rules - Translate both ...	false	scalar	{"cds_a":"ATGGCCATGATCCTCGGGATGCAACCCTTCAAGCGCGAAGACCCGTGA","cds_b":"ATGGCCATGATCCTCGGGATGCAACCCTTCAAGGCGGAAGACCCGTGA"}

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CDS-bench

Synthetic evaluation data for CDS-bench. See the benchmark site for task definitions, prompt variants, and scoring.

This release has 840 instances across 84 task types: 840 rows in easy and 790 rows in hard. Easy and hard differ in supplied biological reference material, with the same inputs and answer. When those prompts would be identical, only the easy copy is retained. Paired easy/hard comparisons should use the 79 task types present in both splits.

The Answer sections use task-specific final-answer instructions. The original prompts remain available for reproducing the existing evaluations. Wording changes and reproduction script are included.

The mass convention was updated on 2 November 2026. Both variants now supply exact isotope constants; easy prompts also supply the derived residue masses. This changes 60 prompts and corrects protein.monoisotopic_mass/10 in both variants from 1375.7130 to 1375.7129. All inputs and other answers are preserved. Constants, provenance, and checksums and the reproduction script document the revision. The matching spec and solver update is published on GitHub. Source attribution and retrieval dates are kept outside prompts.

All fields are strings. answer is the final answer payload, without the Final answer: marker or an explanation. Structured answers are JSON text. inputs_json contains the complete task input object.

Field	Meaning
`id`	Unique prompt identifier, including its variant.
`instance_id`	Question identifier shared by its variants, when both exist.
`task_id`	Published individual or composition task identifier.
`variant`	`easy` or `hard`, indicating supplied reference support. Tasks with identical variants appear only in `easy`.
`prompt`	Complete model-visible task prompt.
`answer`	Canonical final answer payload.
`output_format`	`scalar` or `json`, as defined by the task.
`inputs_json`	The task's complete input object serialized as JSON.

Acquisition and generation code records the source accessions, checksums, sampling rules, and fixed seed. The sources/ directory preserves the original CDS FASTA snapshot for regeneration.

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