Update completed CodeQL benchmark results

CODEQL.md

@@ -4,12 +4,19 @@ This track compares CodeQL with the saved Jev run on the same public method
 pairs. CodeQL analyzes each repository snapshot. Jev's saved decision for each
 method is read from `predictions/current/`.
 
-The cohort is listed in [`codeql-cohort.json`](codeql-cohort.json). A pair is
-counted only if both source states can be recreated, CodeQL extracts both
-target files, and the method text matches the recorded lines. Failed or
-unavailable snapshots are excluded from both models' counts. This is a subset
-of the public bug and security benchmarks, so its results are separate from
-the full-set model tables.
+CodeQL evaluated 682 bug pairs and 305 security pairs. It scanned Python,
+JavaScript, TypeScript, C and C++ repositories listed in
+[`codeql-cohort.json`](codeql-cohort.json). Each counted pair has both source
+versions available, both target files extracted, and method text matching
+the benchmark's recorded lines.
+
+Of the 937 eligible bug pairs, 159 lacked recoverable source files, 72 failed
+source verification, and 24 had failed CodeQL analysis. Of the 323 eligible
+security pairs, 18 had failed analysis. Each database-creation or analysis
+stage had a 30-minute timeout. Unscored pairs are excluded from the counts.
+The main benchmark tables mark CodeQL's coverage with an asterisk.
+[`results.json`](codeql-comparison/results.json) includes the exclusions and
+Jev's results on the same successfully scored pairs.
 
 Input revisions for this run: `bug-pairs-public@80cc6cbcf4b44e140706bcef3d40336ae81e7a05`,
 `security-pairs-public@0b3312a609892f4383e8252841ea94fdf74b2935`, and
@@ -45,12 +52,14 @@ python3 codeql_compare.py scan \
   --data /path/to/public \
   --predictions predictions/current \
   --codeql /path/to/codeql \
-  --rebench-parquet /path/to/swe-rebench-train.parquet
+  --rebench-parquet /path/to/swe-rebench-train.parquet \
+  --all-supported --jobs 4 --scan-timeout 1800
 
 python3 codeql_compare.py score \
   --root /path/to/codeql-work \
   --data /path/to/public \
-  --predictions predictions/current
+  --predictions predictions/current \
+  --all-supported
 ```
 
 The runner writes per-pair decisions and aggregate counts under the work

README.md

@@ -21,6 +21,7 @@ Pairs come from open-source projects in Rust, JavaScript, TypeScript, Python, Go
 | [Span-01](https://www.respan.ai/docs/documentation/span-01/concept) | [Respan scoring API](https://api.respan.ai/api/v1/scores) (`span-01-pro`) |
 | [Liquid d1](https://docs.liquid.ai/lfm/models/decision-models) | [Liquid decision API](https://api.liquid.ai/decisions/v1/systemone) (`d1:free`) |
 | [TypeLLM](https://typellm.ai/docs) | [TypeLLM API](https://api.typellm.ai/v1/generate) (`typellm-latest`) |
+| [CodeQL](https://codeql.github.com/) | Local CPU run in Docker; CodeQL CLI 2.27.1 |
 | [GLiNER-2.5-Decide](https://huggingface.co/fastino/GLiNER2.5-Decide) | [Fastino classification API](https://api.fastino.ai/v1/chat/completions) (`fastino/GLiNER-2.5-Decide`) |
 
 <!-- BEGIN TRADEOFF_RESULTS -->
@@ -49,11 +50,11 @@ Failed requests count as incorrect decisions: a failed issue is a miss; a failed
 | [TypeLLM](https://typellm.ai/docs) | 8.3% | 5.5% | 2.7% | **0** | $0.576 |
 | [Span-01](https://www.respan.ai/docs/documentation/span-01/concept) | 25.3% | 22.6% | 2.7% | **0** | $0.182 |
 | [Liquid d1](https://docs.liquid.ai/lfm/models/decision-models) | 4.1% | 2.5% | 1.6% | **0** | Free tier |
+| [CodeQL](https://codeql.github.com/)* | 5.3% | 4.2% | 1.1% | — | — |
 | [CLM-v0.1-8B](https://huggingface.co/Contrastive-LM/CLM-v0.1-8B) | **81.9%** | 80.9% | 1.0% | **0** | ~$0.210 |
 | [GLiNER-2.5-Decide](https://huggingface.co/fastino/GLiNER2.5-Decide) | 2.3% | **2.1%** | 0.2% | **0** | **$0.175** |
-| [CodeQL](https://codeql.github.com/) (52 pairs) | 0.0% | 0.0% | 0.0% | — | — |
 
-CodeQL scored 52 of the 2,220 public pairs; other models scored all pairs. Its [method decisions](codeql-comparison/) and [evaluation protocol](CODEQL.md) are available here.
+\* CodeQL scored 682 pairs in Python, JavaScript, TypeScript, C and C++; 255 additional pairs could not be scored because source recovery, source verification or analysis failed. [Details](CODEQL.md) · [Method decisions](codeql-comparison/)
 
 ### Private — 498 pairs
 
@@ -83,12 +84,12 @@ CodeQL scored 52 of the 2,220 public pairs; other models scored all pairs. Its [
 | [Liquid d1](https://docs.liquid.ai/lfm/models/decision-models) | 55.6% | 46.8% | 8.8% | **0** | Free tier |
 | [DiffusionGemma Jev](https://github.com/razorback16/openjev) | 33.1% | 25.8% | 7.3% | **0** | **$0.208** |
 | [Span-01](https://www.respan.ai/docs/documentation/span-01/concept) | 21.0% | 17.2% | 3.9% | **0** | $0.251 |
-| [CodeQL](https://codeql.github.com/) (70 pairs) | 3.7% | 0.0% | 3.7% | — | — |
+| [CodeQL](https://codeql.github.com/)* | 4.8% | 1.5% | 3.3% | — | — |
 | [GLiNER-2.5-Decide](https://huggingface.co/fastino/GLiNER2.5-Decide) | 2.1% | **1.6%** | 0.5% | 6 | $0.434 |
 | [SemiF](https://github.com/TheoLeeCJ/SemIf) | **100.0%** | 99.9% | 0.1% | **0** | **$0.208** |
 | [CLM-v0.1-8B](https://huggingface.co/Contrastive-LM/CLM-v0.1-8B) | **100.0%** | 100.0% | 0.0% | **0** | ~$1.432 |
 
-CodeQL scored 70 of the 1,311 public pairs; other models scored all pairs. Its [method decisions](codeql-comparison/) and [evaluation protocol](CODEQL.md) are available here.
+\* CodeQL scored 305 pairs in Python, JavaScript, TypeScript, C and C++; 18 additional pairs could not be scored because source recovery, source verification or analysis failed. [Details](CODEQL.md) · [Method decisions](codeql-comparison/)
 
 ### Private — 439 pairs
 

codeql-cohort.json

@@ -1,38 +1,635 @@
 {
-  "description": "Public CodeQL comparison cohort with pinned Python, JavaScript, TypeScript, C, and C++ method pairs.",
+  "description": "Public Python, JavaScript, TypeScript, C and C++ repositories selected for the CodeQL benchmark.",
   "bug": [
+    "11ty/eleventy",
+    "8398a7/action-slack",
+    "DataDog/integrations-core",
     "Kludex/starlette",
-    "pallets/flask",
-    "pytest-dev/pluggy",
-    "tox-dev/tox",
-    "mcollina/autocannon",
-    "mswjs/msw",
+    "Lightning-AI/lightning",
+    "Qiskit/qiskit",
+    "aaugustin/websockets",
+    "ably/ably-python",
+    "accenture/sfmc-devtools",
+    "acloudguru/serverless-plugin-aws-alerts",
+    "actions/stale",
+    "aeon-toolkit/aeon",
+    "aeye-lab/pymovements",
+    "agnostiqhq/covalent",
+    "alangpierce/sucrase",
+    "algolia/algoliasearch-helper-js",
+    "alloy-framework/alloy",
+    "alteryx/evalml",
+    "ambv/black",
+    "amoffat/sh",
+    "amplify-education/serverless-domain-manager",
+    "amzn/ion-js",
+    "ansible/tower-cli",
+    "ant-design-blazor/ant-design-blazor",
+    "ant-design/ant-design-mobile",
+    "apache/mxnet",
+    "apollographql/apollo-codegen",
+    "apollographql/apollo-server",
+    "artusjs/core",
+    "arve0/markdown-it-attrs",
+    "asottile/add-trailing-comma",
+    "astanin/python-tabulate",
+    "astropy/pyvo",
+    "astropy/specutils",
+    "atlassian/changesets",
+    "auth0/node-auth0",
+    "aws-actions/configure-aws-credentials",
+    "aws-quickstart/taskcat",
+    "awslabs/aws-embedded-metrics-node",
+    "awslabs/cfn-python-lint",
+    "axios/axios",
+    "azat-io/eslint-plugin-perfectionist",
+    "azure/azure-sdk-for-cpp",
+    "azuread/microsoft-authentication-library-for-python",
+    "babel/babel-eslint",
+    "babel/babili",
+    "babel/minify",
+    "badgateway/oauth2-client",
+    "bashtage/arch",
+    "bimmerconnected/bimmer_connected",
+    "biocore/biom-format",
+    "biotite-dev/biotite",
+    "bluesky/bluesky",
+    "boardgameio/boardgame.io",
+    "borgbackup/borg",
+    "bradymholt/cronstrue",
+    "braintree/braintree-web-drop-in",
+    "brettcannon/gidgethub",
+    "brian-team/brian2",
+    "brikev/express-jsdoc-swagger",
+    "buxlabs/boxwood",
     "canjs/can-zone",
+    "caolan/async",
+    "capricorn86/happy-dom",
+    "cdent/gabbi",
+    "cdk8s-team/cdk8s-plus",
+    "cdklabs/cdk-pipelines-github",
+    "celery/celery",
+    "chaijs/chai",
+    "chartjs/chartjs-plugin-zoom",
+    "chezou/tabula-py",
+    "christophebougere/asl-validator",
+    "cloudant/couchbackup",
+    "cloudant/nodejs-cloudant",
+    "cloudpipe/cloudpickle",
+    "cloudreach/sceptre",
+    "cloudtools/troposphere",
     "codemanki/cloudscraper",
+    "collective/icalendar",
+    "compiler-explorer/compiler-explorer",
+    "conan-io/conan",
+    "conda-incubator/grayskull",
+    "conda/conda",
+    "cookiecutter/cookiecutter",
+    "cool-RR/PySnooper",
+    "copier-org/copier",
+    "corteva/rioxarray",
+    "couds/react-bulma-components",
+    "crazy-max/ghaction-docker-meta",
+    "ctfd/ctfd",
+    "cveproject/cve-services",
+    "cyclonedx/cdxgen",
+    "d3/d3-array",
+    "dadi/api",
+    "dagster-io/dagster",
+    "dai-lab/copulas",
+    "danielb2/purdy.js",
+    "dask/dask",
+    "datadog/datadogpy",
+    "dataversioncontrol/dvc",
+    "dbt-labs/dbt-redshift",
+    "dbt-labs/dbt-snowflake",
+    "defi-wonderland/smock",
+    "delgan/loguru",
+    "depcheck/depcheck",
+    "dermotduffy/frigate-hass-card",
+    "deshaw/pyflyby",
+    "detachhead/basedpyright",
+    "devexpress/devextreme-vue",
+    "devpi/devpi",
+    "digdir/designsystemet",
+    "discordjs/voice",
+    "djrobstep/sqlakeyset",
+    "dmitrysoshnikov/regexp-tree",
+    "dvanoni/notero",
+    "e2niee/pandapower",
+    "eclipse/thingweb.node-wot",
+    "edvardchen/eslint-plugin-i18next",
+    "eemeli/yaml",
+    "electron/fiddle",
+    "elm-tooling/elm-language-server",
+    "ember-cli/ember-cli",
+    "ember-template-lint/ember-template-lint",
+    "emdgroup-liquid/liquid",
+    "encode/django-rest-framework",
+    "ericmjl/pyjanitor",
+    "eslint-community/eslint-plugin-eslint-plugin",
+    "eslint/doctrine",
+    "ethereum/web3.py",
+    "evan-liu/karabiner.ts",
+    "eventlet/eventlet",
+    "executablebooks/myst-parser",
+    "explosion/spaCy",
+    "fabien0102/ts-to-zod",
+    "fabricjs/fabric.js",
+    "facebookexperimental/usort",
+    "facebookresearch/hydra",
+    "factoryboy/factory_boy",
+    "fastify/fast-json-stringify",
+    "fastify/fastify-autoload",
+    "fastify/fastify-cors",
+    "fastify/fastify-reply-from",
+    "fastify/fastify-swagger",
+    "fastify/github-action-merge-dependabot",
+    "fatiando/harmonica",
+    "feathersjs/feathers-hooks",
+    "feature-engine/feature_engine",
+    "fhir/sushi",
+    "filerjs/filer",
+    "firebase/firebase-tools",
+    "fontoxml/fontoxpath",
+    "formidablelabs/spectacle",
+    "formidablelabs/urql",
+    "francoismassart/eslint-plugin-tailwindcss",
+    "fraserxu/electron-pdf",
+    "frictionlessdata/datapackage-py",
+    "fsspec/gcsfs",
+    "galileo-galilei/kedro-mlflow",
+    "garmeeh/next-seo",
+    "geofileops/geofileops",
+    "geopandas/geopandas",
+    "getsentry/responses",
+    "getsentry/sentry-capacitor",
+    "getslash/slash",
+    "gitify-app/gitify",
+    "gitpython-developers/gitpython",
+    "gkjohnson/three-mesh-bvh",
+    "glayzzle/php-parser",
+    "glennjones/hapi-swagger",
+    "globus/globus-sdk-python",
+    "goldibex/targaryen",
+    "google/googletest",
+    "google/jax",
+    "googleapis/python-bigquery",
+    "googlechrome/sw-precache",
+    "googlemaps/js-api-loader",
+    "gravity-ui/uikit",
     "gtalarico/pyairtable",
+    "h5py/h5py",
+    "handsontable/hyperformula",
+    "hapijs/code",
+    "hapijs/joi",
+    "hapijs/wreck",
+    "harrisiirak/cron-parser",
+    "harttle/liquidjs",
+    "heroku/react-refetch",
+    "hideoo/starlight-links-validator",
+    "hoburg/gpkit",
+    "horiuchi/dtsgenerator",
+    "huggingface/transformers",
+    "huozhi/bunchee",
+    "huozhi/sugar-high",
+    "hyperbrain/serverless-aws-alias",
+    "hyperjumptech/monika",
+    "iamconsortium/pyam",
+    "iamkun/dayjs",
+    "iamolegga/nestjs-pino",
+    "ianvs/prettier-plugin-sort-imports",
     "illinois/queue",
+    "imgix/react-imgix",
+    "immerjs/immer",
+    "immutable-js/immutable-js",
+    "import-js/eslint-plugin-import",
+    "infernojs/inferno",
+    "influxdata/influxdb-client-js",
+    "intuit/auto",
+    "ioos/compliance-checker",
+    "ipython/ipython",
+    "ishepard/pydriller",
+    "istanbuljs/istanbuljs",
+    "istanbuljs/nyc",
     "jamesramsay/hercule",
-    "rstudio/vetiver-python",
+    "jax-ml/jax",
+    "jazzband/django-axes",
+    "jazzband/pip-tools",
+    "jazzband/tablib",
+    "jcrist/msgspec",
+    "jedwatson/react-select",
+    "jelmer/dulwich",
+    "jira-node/node-jira-client",
+    "jlfwong/speedscope",
+    "jmcgeheeiv/pyfakefs",
+    "jonathanj/eliottree",
+    "joshuakgoldberg/bingo",
+    "joshuakgoldberg/create-typescript-app",
+    "joshuakgoldberg/eslint-plugin-package-json",
+    "joshuakgoldberg/template-typescript-node-package",
+    "joshuakgoldberg/tslint-to-eslint-config",
+    "jprichardson/node-fs-extra",
+    "jquense/yup",
+    "js-data/js-data",
+    "jsonata-js/jsonata",
+    "keithamus/sort-package-json",
+    "kelektiv/node-cron",
+    "khan/flow-to-ts",
+    "kiegroup/github-action-build-chain",
+    "kinto/kinto",
+    "kmyk/online-judge-tools",
+    "kubeflow/pipelines",
+    "kubernetes-client/python",
+    "kyeotic/raviger",
+    "labgrid-project/labgrid",
+    "laspy/laspy",
+    "lektor/lektor",
+    "lesshint/lesshint",
+    "liampauling/flumine",
+    "lingui/js-lingui",
+    "liskhq/lisk-core",
+    "lucasbento/create-graphql",
+    "luin/ioredis",
+    "manusa/electronim",
+    "marp-team/marp-vscode",
+    "martinthoma/flake8-simplify",
+    "matchms/matchms",
+    "materials-consortia/optimade-python-tools",
+    "matplotlib/matplotlib",
+    "mattn/go-sqlite3",
+    "mavlink/mavsdk",
+    "mcollina/autocannon",
+    "mdx-js/mdx-analyzer",
+    "melt-ui/melt-ui",
+    "mesonbuild/meson",
+    "microsoft/fluent-ui-react",
+    "microsoft/tsyringe",
+    "microsoft/vscode-edge-devtools",
+    "microsoft/vscode-vsce",
+    "minetest/minetest",
+    "minio/minio-js",
+    "mirumee/ariadne-codegen",
+    "mitmproxy/pdoc",
+    "moment/luxon",
+    "more-itertools/more-itertools",
+    "mozilla/nunjucks",
+    "mswjs/msw",
+    "mzgoddard/preact-render-spy",
+    "nanomsg/nng",
+    "napalm-automation/napalm",
+    "nasa-ammos/3dtilesrendererjs",
+    "natcap/pygeoprocessing",
+    "naturalcrit/homebrewery",
+    "ncar/geocat-comp",
+    "nearform/fast-jwt",
+    "neet/masto.js",
+    "nestjs/nest",
+    "nestjs/swagger",
+    "netlify/build",
+    "newrelic/newrelic-node-apollo-server-plugin",
+    "nginx/nginx",
+    "ngtcp2/ngtcp2",
+    "nipy/nibabel",
+    "nock/nock",
+    "node-fetch/node-fetch",
+    "node-influx/node-influx",
+    "node-nock/nock",
     "nodejs/llhttp",
+    "nodejs/nodejs.dev",
+    "nomicfoundation/hardhat-ignition",
+    "not-an-aardvark/eslint-plugin-eslint-plugin",
+    "ntnu-ihb/pythonfmu",
+    "numpy/numpy",
+    "nuxt-community/nuxt-i18n",
+    "oasis-open/cti-stix-validator",
+    "oceanprotocol/market",
+    "octokit/oauth-app.js",
+    "octokit/webhooks.js",
+    "okonet/lint-staged",
+    "open-feature/js-sdk",
+    "open-mmlab/mmdetection",
+    "opencybersecurityalliance/stix-shifter",
+    "openmdao/aviary",
+    "openmdao/dymos",
+    "opennmt/opennmt-tf",
+    "opensearch-project/opensearch-py",
+    "openwisp/netjsonconfig",
+    "oscal-compass/compliance-trestle",
+    "owasp/threat-dragon",
+    "pallets/click",
+    "pallets/flask",
+    "pandas-dev/pandas",
+    "pantsbuild/pants",
+    "parmed/parmed",
+    "patrick-kidger/equinox",
+    "paularmstrong/build-tracker",
+    "paustint/soql-parser-js",
+    "payloadcms/payload",
+    "pdm-project/pdm",
+    "perry-mitchell/webdav-client",
+    "pmcelhaney/counterfact",
+    "pmeal/openpnm",
+    "pmndrs/valtio",
+    "postcss/autoprefixer",
+    "postcss/postcss-import",
+    "preactjs/preact-render-to-string",
+    "prefecthq/prefect-aws",
+    "prettier/plugin-pug",
+    "prettier/prettier-eslint",
+    "probmods/webppl",
+    "projectevergreen/greenwood",
+    "projectevergreen/wcc",
+    "projectmesa/mesa",
+    "prometheus/client_python",
+    "pulumi/actions",
+    "pulumi/pulumi-awsx",
+    "py-cov-action/python-coverage-comment-action",
+    "pyca/cryptography",
+    "pycqa/flake8",
+    "pydata/sparse",
+    "pyg-team/pytorch_geometric",
+    "pyjanitor-devs/pyjanitor",
+    "pylons/waitress",
+    "pypa/virtualenv",
+    "pyro-ppl/numpyro",
+    "pysmt/pysmt",
+    "pytest-dev/pluggy",
+    "pythainlp/pythainlp",
+    "python-pendulum/pendulum",
+    "python-semver/python-semver",
+    "python-trio/trio",
+    "python/bedevere",
+    "python/typeshed",
+    "pyvrp/pyvrp",
+    "qpdf/qpdf",
+    "quantum-tii/qibo",
+    "quora/pyanalyze",
+    "quramy/prisma-fabbrica",
+    "qutip/qutip",
+    "rackt/react-router",
+    "randombit/botan",
+    "rasbt/mlxtend",
+    "ray-project/ray",
+    "react-materialize/react-materialize",
+    "reakit/reakit",
+    "redis/redis",
+    "redocly/openapi-cli",
+    "reduxjs/react-redux",
+    "reduxjs/redux-toolkit",
+    "relekang/python-semantic-release",
+    "remarkablemark/html-react-parser",
+    "retroachievements/raintegration",
+    "rhayes777/pyautofit",
+    "rich-harris/buble",
+    "rigetticomputing/pyquil",
+    "robotframework/seleniumlibrary",
+    "robotpy/cxxheaderparser",
+    "rochacbruno/dynaconf",
+    "rock-learning/pytransform3d",
+    "rokucommunity/brighterscript",
+    "rooseveltframework/roosevelt",
+    "ropdebee/mb-userscripts",
+    "rq/rq",
+    "rrd108/vue-mess-detector",
+    "rstudio/vetiver-python",
+    "rwjblue/ember-template-lint",
+    "ryanfitz/vogels",
+    "ryanluker/vscode-coverage-gutters",
+    "salesforce/policy_sentry",
+    "samtools/htslib",
+    "sarugaku/requirementslib",
+    "scikit-build/scikit-build-core",
+    "scikit-optimize/scikit-optimize",
+    "scimmyjs/scimmy",
+    "scipy/scipy",
+    "scitools/cartopy",
+    "scitools/iris",
+    "scrapy/scrapy",
+    "sdispater/tomlkit",
+    "semantic-release/github",
+    "serverless-operations/serverless-step-functions",
+    "serverless/serverless",
+    "sfdo-tooling/cumulusci",
+    "shazow/whatsabi",
+    "shellscape/postcss-less",
+    "shikijs/shiki",
+    "shufo/blade-formatter",
+    "sid88in/serverless-appsync-plugin",
+    "sigoden/dufs",
+    "sindresorhus/dot-prop",
+    "sindresorhus/normalize-url",
+    "sindresorhus/query-string",
+    "slackapi/python-slackclient",
+    "softlayer/softlayer-python",
+    "software-mansion/typegpu",
+    "solid/community-server",
+    "solidjs-community/solid-primitives",
+    "source-academy/js-slang",
+    "sparkpost/node-sparkpost",
+    "spaship/spaship",
+    "spotify/luigi",
+    "stac-utils/pystac-client",
+    "stardog-union/stardog.js",
+    "statelyai/xstate",
+    "stellar/django-polaris",
+    "stephenh/ts-proto",
+    "stfc/fparser",
+    "stingraysoftware/stingray",
+    "stoplightio/spectral",
+    "streamich/memfs",
+    "streamich/react-use",
+    "strongloop/loopback-datasource-juggler",
+    "styled-components/stylelint-processor-styled-components",
+    "styled-system/styled-system",
+    "stylelint-scss/stylelint-scss",
+    "stylelint/vscode-stylelint",
+    "surveyjs/survey-analytics",
+    "swagger-api/swagger-ui",
+    "swarmion/swarmion",
+    "symfony/ux",
+    "syuilo/aiscript",
+    "tailwindlabs/headlessui",
+    "tailwindlabs/tailwindcss",
+    "tailwindlabs/tailwindcss-jit",
+    "takluyver/flit",
+    "tannerlinsley/react-query",
+    "tanstack/query",
+    "tartiflette/tartiflette",
+    "tatethurston/nextjs-routes",
+    "tatuylonen/wiktextract",
+    "tediousjs/node-mssql",
+    "theislab/scanpy",
+    "theupdateframework/python-tuf",
+    "tiangolo/fastapi",
+    "timothycrosley/isort",
+    "tivac/modular-css",
+    "tobikodata/sqlmesh",
+    "tornadoweb/tornado",
+    "tox-dev/sphinx-autodoc-typehints",
+    "tox-dev/tox",
+    "tradingview/lightweight-charts",
     "transmission/transmission",
-    "nginx/nginx",
-    "qpdf/qpdf"
+    "true-myth/true-myth",
+    "twisted/pydoctor",
+    "twitch-apis/twitch-js",
+    "typedorm/typedorm",
+    "ubilabs/react-geosuggest",
+    "un-ts/eslint-plugin-import-x",
+    "unidata/netcdf-c",
+    "unidata/siphon",
+    "unjs/h3",
+    "unjs/ufo",
+    "urql-graphql/urql",
+    "userfront/userfront-core",
+    "vazco/uniforms",
+    "vega/ts-json-schema-generator",
+    "vega/vega-lite",
+    "vgteam/sequencetubemap",
+    "viacominc/data-point",
+    "virtuslab/git-machete",
+    "volkovlabs/volkovlabs-dynamictext-panel",
+    "vue-a11y/eslint-plugin-vuejs-accessibility",
+    "vuejs/composition-api",
+    "w3c/browser-specs",
+    "wagtail/wagtail",
+    "wakujs/waku",
+    "web-push-libs/web-push",
+    "webpack-contrib/css-loader",
+    "webpack-contrib/uglifyjs-webpack-plugin",
+    "webpack/enhanced-resolve",
+    "wheresrhys/fetch-mock",
+    "wtforms/wtforms",
+    "xgcm/xgcm",
+    "xknx/xknx",
+    "xlsform/pyxform",
+    "yannickcr/eslint-plugin-react",
+    "yelp/bravado-core",
+    "ytdl-org/youtube-dl",
+    "yukinarit/pyserde",
+    "zalando/zappr",
+    "zeek/zeek",
+    "zulko/moviepy"
   ],
   "security": [
-    "akshudev/pheonixappapi",
-    "authlib/joserfc",
-    "aio-libs/aiohttp-session",
-    "authlib/authlib",
-    "cole/aiosmtplib",
-    "jasmine/jasmine",
+    "Effect-TS/effect",
+    "FFmpeg/FFmpeg",
+    "GNOME/gdk-pixbuf",
+    "RIOT-OS/RIOT",
+    "SIPp/sipp",
+    "abhinavsingh/proxy.py",
+    "abseil/abseil-cpp",
     "agronholm/anyio",
+    "aio-libs/aiohttp",
+    "aio-libs/aiohttp-session",
+    "akshudev/pheonixappapi",
+    "allegro/bigflow",
+    "altcha-org/altcha-lib",
+    "ankitects/anki",
+    "ansible-collections/community.general",
+    "ansible/ansible-modules-core",
+    "ansible/ansible-runner",
+    "ansibleguy/webui",
+    "anthropics/anthropic-sdk-python",
+    "apache/libcloud",
     "apragacz/django-rest-registration",
-    "executablebooks/markdown-it-py",
+    "arcadeai/arcade-mcp",
+    "archesproject/arches",
+    "arjunsharda/searchor",
+    "arthurkatcher/google-maps-mcp",
+    "artifexsoftware/ghostpdl",
+    "astropy/astropy",
+    "auth0/express-jwt",
+    "authlib/authlib",
+    "authlib/joserfc",
+    "avaiga/taipy",
+    "aws/aws-dynamodb-encryption-python",
+    "aws/sagemaker-training-toolkit",
     "axios/axios",
-    "nlnetlabs/unbound",
+    "bentoml/bentoml",
+    "bndr/pipreqs",
+    "bokeh/bokeh",
+    "bottlepy/bottle",
+    "buildbot/buildbot",
     "catchorg/Catch2",
+    "clearml/clearml",
+    "clinical-genomics/cg",
+    "cog-creators/red-discordbot",
+    "cole/aiosmtplib",
+    "colinhacks/zod",
+    "collerek/ormar",
+    "comfy-org/comfyui-manager",
+    "crossbario/autobahn-python",
+    "curl/curl",
+    "cyberdrop-dl/cyberdrop-dl",
+    "dagster-io/dagster",
+    "danbloomberg/leptonica",
+    "deeplook/svglib",
+    "django-helpdesk/django-helpdesk",
+    "django/django",
+    "dpkp/kafka-python",
+    "dun/munge",
+    "ericsson/codechecker",
+    "erikd/libsndfile",
+    "espressif/esp-idf",
+    "executablebooks/markdown-it-py",
+    "exiv2/exiv2",
+    "expressjs/express",
+    "facebook/hhvm",
+    "ffmpeg/ffmpeg",
+    "freerdp/freerdp",
+    "furlongm/openvpn-monitor",
+    "geopandas/geopandas",
+    "git/git",
+    "gnome/gimp",
+    "gnome/libxml2",
+    "google/googletest",
+    "gramps-project/gramps-web-api",
+    "heartexlabs/label-studio",
+    "hkuds/lightrag",
+    "jamesturk/django-markupfield",
+    "jasmine/jasmine",
+    "jugmac00/flask-reuploaded",
+    "jupyterhub/jupyter-remote-desktop-proxy",
+    "keras-team/keras",
+    "keycloak/keycloak-nodejs-connect",
+    "kkos/oniguruma",
+    "krb5/krb5",
+    "libgit2/libgit2",
+    "libvnc/libvncserver",
+    "marshmallow-code/marshmallow",
+    "matthewwithanm/python-markdownify",
+    "mayuri-chan/pyrofork",
+    "mdadams/jasper",
+    "microsoft/tsyringe",
+    "modoboa/modoboa",
+    "moonlight-stream/moonlight-common-c",
+    "muttmua/mutt",
+    "neomutt/neomutt",
+    "neutrinolabs/xrdp",
     "nginx/nginx",
+    "nicotine-plus/nicotine-plus",
+    "nlnetlabs/unbound",
+    "ntp-project/ntp",
+    "open-quantum-safe/oqs-provider",
+    "opensc/opensc",
+    "openssl/openssl",
+    "openstack/glance",
+    "paulusmack/ppp",
+    "pjsip/pjproject",
+    "python-pillow/Pillow",
     "rdesktop/rdesktop",
-    "uclouvain/openjpeg"
+    "react-hook-form/react-hook-form",
+    "redis/redis",
+    "samba-team/samba",
+    "spdk/spdk",
+    "the-tcpdump-group/tcpdump",
+    "torvalds/linux",
+    "uclouvain/openjpeg",
+    "ultrajson/ultrajson",
+    "vim/vim",
+    "webmproject/libwebp",
+    "wooey/wooey",
+    "zephyrproject-rtos/zephyr"
   ]
 }

codeql-comparison/results.json

@@ -7,50 +7,1325 @@
         "role": "before"
       },
       {
-        "pair_id": "swe-rebench:mcollina__autocannon-332:549c7e4f7eaa",
+        "pair_id": "benign-bug:7a07b0ce9f8cfd4f1ff9d4ee",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "benign-bug:fbed815fa34be32537b9b235",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:ant-design-blazor__ant-design-blazor-4619:5ce69d09c792",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:ant-design-blazor__ant-design-blazor-4619:d11edceafb6f",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:3bcea9a5e0c5",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:4aa3c33f3789",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:5c9b022da1ad",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:738e14b033f2",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:9957690cf2c3",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:bff1572af665",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:c8e944ccb3fe",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:azure__azure-sdk-for-cpp-5189:e68587dc38ee",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:mattn__go-sqlite3-454:41a666f290cc",
+        "reason": "target source not verified in CodeQL database",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:minetest__minetest-15691:2a57442166c1",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:randombit__botan-3594:13b7736d145a",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "swe-rebench:redis__redis-12082:6201e5bb2a54",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:redis__redis-12301:ffabf8a1ebc5",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:redis__redis-13958:d807346a8105",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:tornadoweb__tornado-3488:0164a834c980",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:transmission__transmission-5889:e7ed2acdc784",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:transmission__transmission-6177:10de829bf14c",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "swe-rebench:wakujs__waku-1427:0084a534a10e",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:zeek__zeek-1110:7a430970cab9",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swe-rebench:zeek__zeek-1732:3e5de7341744",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "swe-rebench:zeek__zeek-2512:5f870cc4c27a",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:0006d5a0055355b3164493aa",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:001435e5278eee44273e9328",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:0018c2ddf33864d390319c34",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00269a742c1c4b1e63482ad5",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:002a458c346314238d249390",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:002b8f850754cd2389e52e52",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:003380d471c3c505070bfc5e",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:003b15f6054e93d4fc937725",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:0040ae802539fdf1ef7fd74e",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:0053ba0bea69d64aeac46c41",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:005589e831206dbd8f356fed",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:005ffe279daeea9813ffc0ab",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:006a7a463f2623aec2eab161",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:006ab2462b8faa5106ad31d4",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:007ff49742946990fb40bb01",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00826d2acdd8d01121d5d215",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00864cfc885ea60730c2569f",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00aafb93e3b754b844e5fb86",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00af12f9fe9d35460879e919",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00be185448ab7c661a203b57",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:00be5c239005745a68d1ff83",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:00c4e9aa51349bb33862c89a",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
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+        "reason": "source snapshot unavailable",
+        "role": "before"
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+        "reason": "source snapshot unavailable",
+        "role": "before"
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+      },
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+        "role": "before"
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+        "reason": "source snapshot unavailable",
+        "role": "before"
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+        "role": "after"
+      },
+      {
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+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
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+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
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+        "reason": "source snapshot unavailable",
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+        "role": "before"
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+      {
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+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
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+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
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+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:015f56c029f3dd0f5cf21453",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:017aefb2fac352161d0c281a",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:017c9c8bae7d624809b6fe53",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
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+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
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+        "role": "before"
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+        "role": "before"
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+        "reason": "source snapshot unavailable",
+        "role": "before"
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+        "reason": "source snapshot unavailable",
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+        "role": "before"
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+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
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+      {
+        "pair_id": "swebench-v1:0256fbcfa44e5a10ebaa7c91",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
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+      {
+        "pair_id": "swebench-v1:0268be45c309e5b6b36e3d7d",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
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+        "pair_id": "swebench-v1:19e980bb530863af30946596",
+        "reason": "source snapshot unavailable",
         "role": "before"
       },
       {
-        "pair_id": "swe-rebench:transmission__transmission-6177:10de829bf14c",
-        "reason": "CodeQL analysis unavailable",
+        "pair_id": "swebench-v1:1a28ffa2c47476ef285a4994",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:1a7313d32681753f61c2dc7a",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1a9190835b8873cc8fd5a248",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1bf7fa9b706d7c70165dbc78",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1cbceed848b5f20da1908990",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:1cdbb793168cbaa7a8581ab9",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:1cee468ecf123803f58b2dbf",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1dacb0192ef149514e3fa828",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1db75bc5f74906a6d2df7c69",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:1e43cb1fb7c0ad9da32ee0bd",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1ea4b4abe63dbaabfb4a46a8",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:1ead4295846998ca1010be13",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:225c51a45180178b21a88fbd",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:2264ab36b22ac23f10c258e8",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2428275be4302ec77e64eee2",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:24ccc60876c85d1c5e4234c6",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2698666a67c4e0e8ceb66b59",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:293d6ee4d26f72e6a5378aee",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:296fb2b205f8057e49edec71",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:29d3546c1b78af9c2b81e419",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2a5724241efc8673a4d2a8d4",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:2a579c98f28384dbe079467c",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2e5ba7366f8303a0e4099eac",
+        "reason": "target source not verified in CodeQL database",
+        "role": "after"
+      },
+      {
+        "pair_id": "swebench-v1:2ec69126a75b5be13f395bbb",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2ed1a079603017f8a5e94000",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:2f58c6ffcf5035bf94e757b3",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:304f643f8d428093874b10c9",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:3293c52230d70037a2d6d342",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:32ec963fce99b517f7700f1a",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:364b3a15d06b970667b584a9",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:3993aa245b1795591bfe5457",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:3d4c960296c23c65b6cddff1",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:3df9afb10b07630f29e06e50",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:3e16b0348af178431e1d4423",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:41877aeb044af6d43094484f",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:4bbb1d425a848a0b062a1d7b",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:50eabf9c97f1dbbdde392a03",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:57ff187eced72e983a79c510",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:6059c96a03196d02e889a893",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:67a31d7f4a42c0dd14ac81b3",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:6e96998eb776e4b7f049237a",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:705f40131fe6cebfed699207",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:7591d2835649c4e56de0008b",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:77b24d0b3735254f8923fd51",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:84bf50c0e0445ad0fc06993b",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:951cc1ab9d83feba5fd9ced8",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:a4f78359cfc1305d7ec1fa86",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:b382f112450ded9e6981516c",
+        "reason": "source snapshot unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "swebench-v1:cd66b66d66f1412c4a14209a",
+        "reason": "source snapshot unavailable",
         "role": "before"
       }
     ],
     "models": {
       "codeql": {
-        "f1": 0.0,
-        "fn": 21,
-        "fp": 0,
-        "fpr": 0.0,
-        "precision": null,
-        "recall": 0.0,
-        "recall_minus_fpr": 0.0,
-        "tn": 83,
-        "tp": 0
+        "f1": 0.09612403100775195,
+        "fn": 550,
+        "fp": 33,
+        "fpr": 0.0421455938697318,
+        "precision": 0.484375,
+        "recall": 0.05335628227194492,
+        "recall_minus_fpr": 0.01121068840221312,
+        "tn": 750,
+        "tp": 31
       },
       "jev": {
-        "f1": 0.34285714285714286,
-        "fn": 15,
-        "fp": 8,
-        "fpr": 0.0963855421686747,
-        "precision": 0.42857142857142855,
-        "recall": 0.2857142857142857,
-        "recall_minus_fpr": 0.189328743545611,
-        "tn": 75,
-        "tp": 6
+        "f1": 0.319047619047619,
+        "fn": 447,
+        "fp": 125,
+        "fpr": 0.15964240102171137,
+        "precision": 0.5173745173745173,
+        "recall": 0.2306368330464716,
+        "recall_minus_fpr": 0.07099443202476022,
+        "tn": 658,
+        "tp": 134
       }
     },
-    "pairs": 52,
-    "requested_pairs": 56
+    "pairs": 682,
+    "requested_pairs": 937
   },
   "security": {
     "missing_sides": [
+      {
+        "pair_id": "009ffed856a8788e2837bdaa",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "2e1ed03341b81618774be08b",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "78abe56a2d260a1c8f3f5176",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "a8cb4e80fac6926be114f107",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
       {
         "pair_id": "benign-multilang:92f8c1dd3d04cf1d36a9399f",
         "reason": "CodeQL analysis unavailable",
@@ -65,33 +1340,88 @@
         "pair_id": "benign-multilang:fcdedd456a15c760f122a8a3",
         "reason": "CodeQL analysis unavailable",
         "role": "after"
+      },
+      {
+        "pair_id": "benign-security:bd479f434cd5d3d6ef652eb3",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "d890752301f782d48d3bef65",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "f21089afd7149b7b2f15bd2a",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "native-cwe120-exp-v1:7e7983a281c8561a",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "native-cwe120-exp-v1:a98788b2e99f453a",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "torvalds_linux__719d3e71691d__emac_rx_packet",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "torvalds_linux__96c5c6e6a5b6__predicate_parse",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "torvalds_linux__9cac69912052__cachefiles_add_cache",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "vim_vim__a9336b476fd1__prop_add_one",
+        "reason": "CodeQL analysis unavailable",
+        "role": "after"
+      },
+      {
+        "pair_id": "zephyrproject-rtos_zephyr__59cf34bf212e__unschedule_locked",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
+      },
+      {
+        "pair_id": "zephyrproject-rtos_zephyr__8dc7a37bc754__z_vrfy_k_poll",
+        "reason": "CodeQL analysis unavailable",
+        "role": "before"
       }
     ],
     "models": {
       "codeql": {
-        "f1": 0.07142857142857142,
-        "fn": 26,
-        "fp": 0,
-        "fpr": 0.0,
-        "precision": 1.0,
-        "recall": 0.037037037037037035,
-        "recall_minus_fpr": 0.037037037037037035,
-        "tn": 113,
-        "tp": 1
+        "f1": 0.08849557522123892,
+        "fn": 200,
+        "fp": 6,
+        "fpr": 0.015,
+        "precision": 0.625,
+        "recall": 0.047619047619047616,
+        "recall_minus_fpr": 0.03261904761904762,
+        "tn": 394,
+        "tp": 10
       },
       "jev": {
-        "f1": 0.3404255319148936,
-        "fn": 19,
-        "fp": 12,
-        "fpr": 0.10619469026548672,
-        "precision": 0.4,
-        "recall": 0.2962962962962963,
-        "recall_minus_fpr": 0.19010160603080956,
-        "tn": 101,
-        "tp": 8
+        "f1": 0.5610859728506787,
+        "fn": 86,
+        "fp": 108,
+        "fpr": 0.27,
+        "precision": 0.5344827586206896,
+        "recall": 0.5904761904761905,
+        "recall_minus_fpr": 0.32047619047619047,
+        "tn": 292,
+        "tp": 124
       }
     },
-    "pairs": 70,
-    "requested_pairs": 73
+    "pairs": 305,
+    "requested_pairs": 323
   }
 }

codeql_compare.py

@@ -32,15 +32,17 @@ def rows(path):
 
 
 def selected_pairs(args):
-    cohort = json.loads(Path(args.cohort).read_text())
+    cohort = None if args.all_supported else json.loads(Path(args.cohort).read_text())
     selected = {}
     for domain in ("bug", "security"):
-        repos = set(cohort[domain])
+        repos = set(cohort[domain]) if cohort else None
         selected[domain] = [
             pair for pair in rows(Path(args.data) / domain / "benchmark.jsonl")
-            if pair["repository"] in repos
+            if (repos is None or pair["repository"] in repos)
             and pair["language"].lower() in LANGUAGES
-            and all(pair[role].get("revision") for role in ("before", "after"))
+            and all(isinstance(pair[role].get("revision"), str)
+                    and re.fullmatch(r"[0-9a-f]{40}", pair[role]["revision"])
+                    for role in ("before", "after"))
         ]
     return selected
 
@@ -390,6 +392,8 @@ def main():
     parser.add_argument("--data", required=True, help="directory with bug/security/benchmark.jsonl")
     parser.add_argument("--predictions", required=True, help="directory with bug/security/jev.jsonl")
     parser.add_argument("--cohort", default=str(Path(__file__).with_name("codeql-cohort.json")))
+    parser.add_argument("--all-supported", action="store_true",
+                        help="scan every pair in supported languages with two Git revisions")
     parser.add_argument("--codeql", help="unpacked CodeQL CLI directory")
     parser.add_argument("--rebench-parquet", help="SWE-rebench-V2 source Parquet with gold patches")
     parser.add_argument("--image", default="node:22-bookworm")

test_codeql_compare.py

@@ -3,11 +3,33 @@ import sys
 import tempfile
 import unittest
 from pathlib import Path
+from types import SimpleNamespace
 
-from codeql_compare import codeql_alert, method_span, metrics, run
+from codeql_compare import codeql_alert, method_span, metrics, run, selected_pairs
 
 
 class CodeQLComparisonTests(unittest.TestCase):
+    def test_all_supported_selects_every_eligible_repository(self):
+        revision = "a" * 40
+        eligible = {"pair_id": "eligible", "repository": "other/repo", "language": "python",
+                    "before": {"revision": revision}, "after": {"revision": revision}}
+        unsupported = {**eligible, "pair_id": "unsupported", "language": "php"}
+        missing_revision = {**eligible, "pair_id": "missing",
+                            "after": {"revision": None}}
+        with tempfile.TemporaryDirectory() as directory:
+            root = Path(directory)
+            for domain in ("bug", "security"):
+                path = root / domain / "benchmark.jsonl"
+                path.parent.mkdir()
+                path.write_text("".join(json.dumps(row) + "\n" for row in
+                                        (eligible, unsupported, missing_revision)))
+            cohort = root / "cohort.json"
+            cohort.write_text(json.dumps({"bug": ["selected/repo"],
+                                          "security": ["selected/repo"]}))
+            args = SimpleNamespace(data=str(root), cohort=str(cohort), all_supported=True)
+            self.assertEqual([row["pair_id"] for row in selected_pairs(args)["bug"]],
+                             ["eligible"])
+
     def test_alert_requires_primary_location_inside_method_and_relevant_tag(self):
         side = {
             "path": "src/example.py",

tradeoff.py

@@ -151,7 +151,7 @@ def results_table(rows: list[dict]) -> str:
         is_codeql = row["model_id"] == "codeql"
         name = model_link(row["model_id"])
         if is_codeql:
-            name += f" ({row['benchmark_pairs']:,} pairs)"
+            name += "*"
         table.append("| " + " | ".join((
             name,
             mark(percent(recall), not is_codeql and round(recall * 100, 1) == best_recall),
@@ -244,8 +244,10 @@ def render_sections(results: list[dict], curves_by_domain: dict[str, dict], outp
                      f"### Public — {public[0]['benchmark_pairs']:,} pairs", "",
                      results_table(public), ""]
         if domain in ("bug", "security"):
-            sections += [f"CodeQL scored {comparison['pairs']:,} of the {public[0]['benchmark_pairs']:,} public pairs; other models scored all pairs. "
-                         "Its [method decisions](codeql-comparison/) and [evaluation protocol](CODEQL.md) are available here.", ""]
+            missing = comparison["requested_pairs"] - comparison["pairs"]
+            sections += [f"\\* CodeQL scored {comparison['pairs']:,} pairs in Python, JavaScript, TypeScript, C and C++; "
+                         f"{missing:,} additional pairs could not be scored because source recovery, source verification or analysis failed. "
+                         "[Details](CODEQL.md) · [Method decisions](codeql-comparison/)", ""]
         sections += [f"### Private — {private[0]['benchmark_pairs']:,} pairs", "",
                      results_table(private), ""]
     return "\n".join(sections)