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import os
import logging
from pathlib import Path
from typing import Optional, Tuple
import cv2
import h5py
import numpy as np
import tyro
from rich.logging import RichHandler
from tqdm import tqdm
from utils.sync_timestamps import (
synchronize_timestamps_3way,
save_sync_csv,
_pick_latest_file,
_pick_latest_file_multi_ext,
SyncResult3Way,
)
from utils.extract_camera_data import extract_camera_data
from utils.extract_dji_data import extract_dji_rgb
from utils.extract_radar_data import process_single_frame
from utils.extract_max_data import extract_max30105_for_sequence
from utils.extract_pcd import extract_point_cloud_from_frame
def setup_logging(name):
logging.basicConfig(
level=logging.INFO,
format=f"%(name)-12s %(message)s",
datefmt="[%H:%M:%S]",
handlers=[RichHandler()]
)
return logging.getLogger(name)
def load_radar_frames(radar_h5_path: str, frame_indices: np.ndarray) -> np.ndarray:
"""
Load selected radar frames from HDF5.
Returns:
- radar_frames: shape (N, doppler, tx, rx, range), dtype from file (typically int16)
"""
with h5py.File(radar_h5_path, "r") as f:
if "radar_data" not in f:
raise ValueError(f"Dataset 'radar_data' not found in {radar_h5_path}")
num_frames_attr = f.attrs.get("num_frames")
if isinstance(num_frames_attr, (int, np.integer)):
num_frames_attr = int(num_frames_attr)
else:
num_frames_attr = f["radar_data"].shape[0]
# Load only the specified indices
frames = []
for idx in frame_indices:
if idx < 0 or idx >= num_frames_attr:
continue
frames.append(f["radar_data"][int(idx)])
if not frames:
return np.empty((0, 0, 0, 0, 0), dtype=np.int16)
return np.stack(frames, axis=0)
def _resize_rgb_to(
frames: np.ndarray,
target_size: Tuple[int, int],
interpolation: int = cv2.INTER_LINEAR,
log=None,
) -> np.ndarray:
"""
Resize RGB frames (N, H, W, 3) uint8 to (N, target_h, target_w, 3).
target_size: (width, height) for cv2 convention, e.g. (512, 288).
"""
N, H, W, C = frames.shape
assert C == 3 and frames.dtype == np.uint8
w, h = target_size
if (W, H) == (w, h):
return frames
out = np.empty((N, h, w, 3), dtype=np.uint8)
if log:
log.info(f" Resizing RGB {frames.shape} -> (N, {h}, {w}, 3)...")
for i in range(N):
out[i] = cv2.resize(frames[i], (w, h), interpolation=interpolation)
return out
def save_processed_optimized(
output_dir: str,
radar_cube: Optional[np.ndarray] = None,
zed_rgb: Optional[np.ndarray] = None,
zed_depth_mm: Optional[np.ndarray] = None,
dji_rgb: Optional[np.ndarray] = None,
radar_timestamps: Optional[np.ndarray] = None,
zed_timestamps: Optional[np.ndarray] = None,
dji_timestamps: Optional[np.ndarray] = None,
sync_result=None,
metadata: dict = None,
rgb_codec: str = "mjpeg",
radar_filename: str = "radar.npy",
log=None,
):
"""
Save processed multimodal data using optimized formats for fast loading.
File structure:
- radar.npy: Radar data (complex64)
- dji_rgb.npy: DJI RGB (N, 504, 896, 3) uint8, resized from 1920x1080
- zed_rgb.npy: ZED RGB (N, 504, 896, 3) uint8, resized from original
- zed_depth.npy: ZED depth (uint16 millimeters)
- metadata.json: Shapes, dtypes, timestamps, sync indices, and other metadata
rgb_codec: Unused (kept for backward compatibility).
Args:
output_dir: Directory path to save files and metadata JSON
radar_cube: (N, doppler, elevation, azimuth, range) complex64
zed_rgb: (N, H, W, 3) uint8
zed_depth_mm: (N, H, W) float32
dji_rgb: (N, H, W, 3) uint8
radar_timestamps: (N,) float64 - milliseconds
zed_timestamps: (N,) float64 - milliseconds
dji_timestamps: (N,) float64 - milliseconds
sync_result: SyncResult or SyncResult3Way object
metadata: Optional dict of additional metadata
log: Logger instance
"""
import json
if log:
log.info(f"Saving to optimized format in directory: {output_dir}")
# Prepare metadata dictionary
meta_dict = {}
# Save radar data as NPY
if radar_cube is not None:
radar_path = os.path.join(output_dir, radar_filename)
np.save(radar_path, radar_cube)
meta_dict['radar'] = {
'shape': list(radar_cube.shape),
'dtype': str(radar_cube.dtype),
'shape_info': '(N, doppler, elevation, azimuth, range)',
'num_frames': int(radar_cube.shape[0]),
'file': radar_filename
}
if radar_timestamps is not None:
meta_dict['radar']['timestamps_ms'] = [float(t) for t in radar_timestamps]
if log:
log.info(f" Radar: {radar_cube.shape} {radar_cube.dtype} -> {radar_filename}")
# Save DJI RGB: resize 1920x1080 -> 896x504, then save as NPY for fast loading
if dji_rgb is not None:
dji_rgb_resized = _resize_rgb_to(dji_rgb, (896, 504), log=log)
dji_path = os.path.join(output_dir, "dji_rgb.npy")
np.save(dji_path, dji_rgb_resized)
meta_dict["dji_rgb"] = {
"shape": list(dji_rgb_resized.shape),
"dtype": str(dji_rgb_resized.dtype),
"num_frames": int(dji_rgb_resized.shape[0]),
"file": "dji_rgb.npy",
"resolution": [896, 504],
"original_resolution": [dji_rgb.shape[2], dji_rgb.shape[1]],
}
if dji_timestamps is not None:
meta_dict["dji_rgb"]["timestamps_ms"] = [float(t) for t in dji_timestamps]
if log:
log.info(
f" DJI RGB: {dji_rgb.shape} -> resized {dji_rgb_resized.shape} -> dji_rgb.npy"
)
# Save ZED RGB as NPY: resize to 896x504
if zed_rgb is not None:
zed_rgb_resized = _resize_rgb_to(zed_rgb, (896, 504), log=log)
zed_rgb_path = os.path.join(output_dir, "zed_rgb.npy")
np.save(zed_rgb_path, zed_rgb_resized)
meta_dict["zed_rgb"] = {
"shape": list(zed_rgb_resized.shape),
"dtype": str(zed_rgb_resized.dtype),
"num_frames": int(zed_rgb_resized.shape[0]),
"file": "zed_rgb.npy",
"resolution": [896, 504],
"original_resolution": [zed_rgb.shape[2], zed_rgb.shape[1]],
}
if zed_timestamps is not None:
meta_dict["zed_rgb"]["timestamps_ms"] = [float(t) for t in zed_timestamps]
if log:
log.info(f" ZED RGB: {zed_rgb.shape} {zed_rgb.dtype} ({rgb_codec.upper()} codec)")
# Save ZED depth as uint16 npy
if zed_depth_mm is not None:
zed_depth_path = os.path.join(output_dir, 'zed_depth.npy')
depth_uint16 = np.clip(zed_depth_mm, 0, 65535).astype(np.uint16)
np.save(zed_depth_path, depth_uint16)
meta_dict['zed_depth'] = {
'shape': list(zed_depth_mm.shape),
'dtype': 'uint16',
'original_dtype': str(zed_depth_mm.dtype),
'num_frames': int(zed_depth_mm.shape[0]),
'depth_units': 'millimeters',
'depth_mode': 'NEURAL_PLUS',
'file': 'zed_depth.npy'
}
if zed_timestamps is not None:
meta_dict['zed_depth']['timestamps_ms'] = [float(t) for t in zed_timestamps]
if log:
log.info(f" ZED Depth: {zed_depth_mm.shape} -> uint16 zed_depth.npy")
# Add synchronization info to metadata
if sync_result is not None:
sync_meta = {
'tolerance_ms': float(sync_result.tolerance_ms)
}
if hasattr(sync_result, 'triples'): # 3-way sync
radar_idx = [int(t[0]) for t in sync_result.triples]
zed_idx = [int(t[1]) for t in sync_result.triples]
dji_idx = [int(t[2]) for t in sync_result.triples]
sync_meta['sync_type'] = '3-way'
sync_meta['radar_indices'] = radar_idx
sync_meta['zed_indices'] = zed_idx
sync_meta['dji_indices'] = dji_idx
sync_meta['diffs_radar_zed_ms'] = [float(d) for d in sync_result.diffs_radar_zed_ms]
sync_meta['diffs_radar_dji_ms'] = [float(d) for d in sync_result.diffs_radar_dji_ms]
else: # 2-way sync
camera_idx = [int(p[0]) for p in sync_result.pairs]
radar_idx = [int(p[1]) for p in sync_result.pairs]
sync_meta['sync_type'] = '2-way'
sync_meta['camera_indices'] = camera_idx
sync_meta['radar_indices'] = radar_idx
sync_meta['diffs_ms'] = [float(d) for d in sync_result.diffs_ms]
meta_dict['sync'] = sync_meta
# Add optional metadata
if metadata:
meta_dict['metadata'] = metadata
# Save metadata to JSON
metadata_path = os.path.join(output_dir, 'metadata.json')
with open(metadata_path, 'w') as f:
json.dump(meta_dict, f, indent=2)
if log:
log.info(f"Metadata saved to: metadata.json")
log.info(f"Optimized files saved successfully in: {output_dir}")
def process_sequence(
sequence_dir: str,
no_radar: bool,
no_camera: bool,
no_dji: bool,
rgb_codec: str = "mjpeg",
no_doppler: bool = False,
pcd: bool = True,
base_output_dir: str = "processed",
log=None,
):
"""
Process a single sequence directory.
Args:
sequence_dir: Path to sequence directory containing sensor data files
no_radar: Skip radar processing
no_camera: Skip ZED camera (RGB + depth) processing
no_dji: Skip DJI RGB processing
log: Logger instance
"""
# Fixed parameters
tolerance_ms = 50.0
enforce_one_to_one = True
depth_confidence = 100
depth_texture_confidence = 100
log.info("="*80)
log.info(f"Processing sequence: {sequence_dir}")
log.info("="*80)
# Validate options
if no_radar and no_camera and no_dji and not pcd:
log.error("Cannot skip all modalities. At least one must be processed.")
return False, 0, "all modalities skipped"
# Log processing mode
processing_modes = []
if not no_radar:
processing_modes.append("radar")
if not no_camera:
processing_modes.append("ZED RGB+depth")
if not no_dji:
processing_modes.append("DJI RGB")
if pcd:
processing_modes.append("canonical 3-D radar point clouds")
log.info(f"Processing modes: {', '.join(processing_modes)}")
log.info(f"Synchronization: 3-way (radar + ZED + DJI), tolerance={tolerance_ms}ms")
# Auto-detect files
log.info(f"Scanning directory: {sequence_dir}")
radar_h5 = _pick_latest_file(sequence_dir, "radar_*.h5")
zed_timestamps_h5 = _pick_latest_file(sequence_dir, "camera_timestamps_*.h5")
svo_path = _pick_latest_file(sequence_dir, "zed_*.svo2")
dji_timestamps_h5 = _pick_latest_file(sequence_dir, "dji_timestamps_*.h5")
dji_video_path = _pick_latest_file_multi_ext(sequence_dir, ["dji_*.mkv", "dji_*.mp4"])
log.info(f"Radar H5: {radar_h5}")
log.info(f"ZED timestamps: {zed_timestamps_h5}")
log.info(f"ZED SVO2: {svo_path}")
log.info(f"DJI timestamps: {dji_timestamps_h5}")
log.info(f"DJI video: {dji_video_path}")
# Create output directory
sequence_basename = os.path.basename(os.path.normpath(sequence_dir))
output_dir = os.path.join(base_output_dir, sequence_basename)
os.makedirs(output_dir, exist_ok=True)
log.info(f"Output directory: {output_dir}")
# Step 1: Synchronize timestamps (3-way)
log.info("Synchronizing timestamps (3-way: radar + ZED + DJI)...")
sync_result = None
try:
sync_result = synchronize_timestamps_3way(
radar_h5=radar_h5,
zed_timestamps_h5=zed_timestamps_h5,
dji_timestamps_h5=dji_timestamps_h5,
tolerance_ms=tolerance_ms,
enforce_one_to_one=enforce_one_to_one,
svo_path=svo_path,
dji_video_path=dji_video_path,
)
except (OSError, ValueError) as e:
err = f"Timestamp file corrupt or truncated: {e}"
log.error(err)
return False, 0, err
log.info(f"Synchronized {len(sync_result.triples)} triples")
if len(sync_result.triples) == 0:
log.warning("No synchronized triples found. Skipping this sequence.")
return False, 0, "no synchronized triples"
# Special handling for Razor-1 sequence: filter out frames with ZED index > 10000
sequence_name = os.path.basename(os.path.normpath(sequence_dir))
if sequence_name == "Razor-1":
zed_indices = np.array([t[1] for t in sync_result.triples], dtype=np.int64)
original_count = len(zed_indices)
valid_mask = zed_indices <= 10000
filtered_count = int(valid_mask.sum())
if filtered_count < original_count:
log.warning(f"Razor-1 sequence: Filtered out {original_count - filtered_count} frames with ZED index > 10000")
log.info(f"Remaining frames: {filtered_count}")
# Create new SyncResult3Way with filtered data
filtered_triples = [t for t, valid in zip(sync_result.triples, valid_mask) if valid]
filtered_diffs_radar_zed = np.array(sync_result.diffs_radar_zed_ms)[valid_mask]
filtered_diffs_radar_dji = np.array(sync_result.diffs_radar_dji_ms)[valid_mask]
sync_result = SyncResult3Way(
triples=filtered_triples,
diffs_radar_zed_ms=filtered_diffs_radar_zed,
diffs_radar_dji_ms=filtered_diffs_radar_dji,
radar_count=sync_result.radar_count,
zed_count=sync_result.zed_count,
dji_count=sync_result.dji_count,
tolerance_ms=sync_result.tolerance_ms
)
if len(sync_result.triples) == 0:
log.warning("Razor-1 sequence: No frames left after filtering. Skipping this sequence.")
return False, 0, "Razor-1: no frames after filter"
sync_csv_path = os.path.join(output_dir, "sync_triples.csv")
save_sync_csv(sync_csv_path, sync_result)
log.info(f"Saved sync triples: {sync_csv_path}")
radar_indices = np.array([t[0] for t in sync_result.triples], dtype=np.int64)
zed_indices = np.array([t[1] for t in sync_result.triples], dtype=np.int64)
dji_indices = np.array([t[2] for t in sync_result.triples], dtype=np.int64)
# Load timestamps for metadata
log.info("Loading timestamps for metadata...")
try:
with h5py.File(radar_h5, 'r') as f:
radar_timestamps = f['timestamps_ms'][:][radar_indices]
with h5py.File(zed_timestamps_h5, 'r') as f:
zed_timestamps = f['timestamps_ms'][:][zed_indices]
with h5py.File(dji_timestamps_h5, 'r') as f:
dji_timestamps = f['timestamps_ms'][:][dji_indices]
except (OSError, ValueError) as e:
err = f"Failed to load timestamps for metadata: {e}"
log.error(err)
return False, 0, err
if any(Path(sequence_dir).glob("max30105_*.h5")):
extract_max30105_for_sequence(
sequence_dir, radar_indices, radar_timestamps, output_dir,
max_tolerance_ms=tolerance_ms, enforce_one_to_one=enforce_one_to_one, log=log,
)
else:
log.info("No MAX30105 file; skipping optional sensor")
# Initialize data holders
radar_cube_arr = None
zed_rgb = None
zed_depth_mm = None
dji_rgb = None
# Step 2: Process radar data
if not no_radar or pcd:
log.info(f"Loading {len(radar_indices)} radar frames...")
radar_raw_frames = load_radar_frames(radar_h5, radar_indices)
log.info(f"Radar raw shape: {radar_raw_frames.shape}, dtype: {radar_raw_frames.dtype}")
radar_cubes = []
pcd_dir = os.path.join(output_dir, "pcd")
if pcd:
os.makedirs(pcd_dir, exist_ok=True)
with tqdm(total=len(radar_raw_frames), desc="Radar processing", unit="frame") as pbar:
for frame_index, frame in enumerate(radar_raw_frames):
if not no_radar:
radar_cubes.append(process_single_frame(frame, no_doppler=no_doppler))
if pcd:
np.save(os.path.join(pcd_dir, f"pcd_{frame_index}.npy"), extract_point_cloud_from_frame(frame))
pbar.update(1)
if not no_radar:
radar_cube_arr = np.stack(radar_cubes, axis=0)
log.info(f"Radar cube shape: {radar_cube_arr.shape}, dtype: {radar_cube_arr.dtype}")
else:
log.info("Skipping radar processing (--no-radar)")
# Step 3: Extract ZED RGB and depth
if not no_camera:
log.info(f"Extracting {len(zed_indices)} ZED RGB+depth frames from SVO...")
zed_rgb, zed_depth_mm, _intrinsics = extract_camera_data(
svo_path=svo_path,
frame_indices=zed_indices,
depth_mode="NEURAL_PLUS",
confidence_threshold=depth_confidence,
texture_confidence_threshold=depth_texture_confidence,
)
log.info(f"ZED RGB shape: {zed_rgb.shape}, dtype: {zed_rgb.dtype}")
log.info(f"ZED depth shape: {zed_depth_mm.shape}, dtype: {zed_depth_mm.dtype}")
else:
log.info("Skipping ZED RGB/depth extraction (--no-camera)")
# Step 4: Extract DJI RGB
if not no_dji:
log.info(f"Extracting {len(dji_indices)} DJI RGB frames from video...")
dji_rgb = extract_dji_rgb(
video_path=dji_video_path,
frame_indices=dji_indices,
)
log.info(f"DJI RGB shape: {dji_rgb.shape}, dtype: {dji_rgb.dtype}")
else:
log.info("Skipping DJI RGB extraction (--no-dji)")
# Step 5: Save output using optimized format
log.info("Saving to optimized format...")
metadata = {
'sequence_dir': sequence_dir,
'tolerance_ms': tolerance_ms,
'enforce_one_to_one': enforce_one_to_one,
'depth_confidence': depth_confidence,
'depth_texture_confidence': depth_texture_confidence,
'no_doppler': no_doppler,
}
save_processed_optimized(
output_dir=output_dir,
radar_cube=radar_cube_arr,
zed_rgb=zed_rgb,
zed_depth_mm=zed_depth_mm,
dji_rgb=dji_rgb,
radar_timestamps=radar_timestamps,
zed_timestamps=zed_timestamps,
dji_timestamps=dji_timestamps,
sync_result=sync_result,
metadata=metadata,
rgb_codec=rgb_codec,
radar_filename="radar_no_doppler.npy" if no_doppler else "radar.npy",
log=log,
)
log.info("Sequence processing complete.")
log.info(f"Output directory: {os.path.abspath(output_dir)}")
# Return success status and number of synced frames
num_synced_frames = len(sync_result.triples)
return True, num_synced_frames, ""
def main(
dataset: str,
sequences: Optional[list[str]] = None,
no_radar: bool = False,
no_camera: bool = False,
no_dji: bool = False,
list_unprocessed: bool = False,
rgb_codec: str = "mjpeg",
no_doppler: bool = False,
pcd: bool = True,
output_dir: str = "processed",
):
"""
Process multimodal sensor data from a dataset containing multiple sequences.
Pipeline for each sequence:
1. Auto-detect files in sequence directory:
- radar_*.h5 (AWR1843 MIMO radar)
- camera_timestamps_*.h5 (ZED camera timestamps)
- zed_*.svo2 (ZED video with depth)
- dji_timestamps_*.h5 (DJI action camera timestamps)
- dji_*.mkv or dji_*.mp4 (DJI video)
2. Synchronize timestamps (3-way: radar + ZED + DJI)
- tolerance_ms: 50ms (fixed)
- enforce_one_to_one: True (fixed)
3. Extract and process synchronized frames:
- Radar: Process AWR1843 raw data to Range-Doppler-Azimuth-Elevation cube
- ZED: Extract RGB (LEFT camera) + depth maps (millimeters, confidence=100)
- DJI: Extract RGB frames
Output saved to: <output_dir>/<sequence_name>/
- radar.npy: Full Range-Doppler-Angle radar data (complex64)
- radar_no_doppler.npy: First-chirp Range-Angle data (--no-doppler)
- dji_rgb.npy: DJI RGB (N, 504, 896, 3) uint8, resized from 1920x1080
- zed_rgb.npy: ZED RGB (N, 504, 896, 3) uint8, resized from original
- zed_depth.npy: ZED depth (uint16 millimeters)
- max30105.npy: MAX30105 samples_uint32 aligned to radar timestamps
- metadata.json: Shapes, dtypes, timestamps, sync indices
- sync_triples.csv: Frame index mapping (radar, ZED, DJI)
- pcd/pcd_<index>.npy: Canonical 3-D radar points (default)
rgb_codec: Unused (kept for backward compatibility).
Args:
dataset: Path to dataset directory containing sequence subdirectories (required)
sequences: List of specific sequence names to process. If not provided, processes all
sequences found in the dataset directory. If provided, processes only the
specified sequences.
no_radar: Skip radar processing
no_camera: Skip ZED camera (RGB + depth) processing
no_dji: Skip DJI RGB processing
no_doppler: Keep only chirp 0 and skip the Doppler FFT.
pcd: Save a canonical 3-D point cloud for every synchronized radar frame (default: True).
list_unprocessed: If True, only list dataset sequences not yet in output_dir and exit
rgb_codec: "ffv1" or "mjpeg" for RGB video encoding (mjpeg = faster loading)
output_dir: Base directory where processed sequences are written
Examples:
# Process all sequences in Data directory
python processor.py --dataset Data
# Process specific sequences only
python processor.py --dataset Data --sequences seq1 seq2 seq3
# Process without radar
python processor.py --dataset Data --no-radar
# Process only camera data
python processor.py --dataset Data --no-radar --no-dji
# Skip point clouds if only array outputs are needed
python processor.py --dataset Data --no-pcd
"""
log = setup_logging("Processor")
log.info("=" * 80)
log.info("MobiCom Multimodal Dataset Processor")
log.info("=" * 80)
log.info(f"Dataset path: {dataset}")
log.info("Output format: Optimized (NPY for radar and RGB, ZED depth uint16)")
log.info(f"Base output directory: {output_dir}")
# Validate dataset path
if not os.path.isdir(dataset):
log.error(f"Dataset directory not found: {dataset}")
return
# Validate options
if no_radar and no_camera and no_dji and not pcd and not list_unprocessed:
log.error("Cannot skip all modalities. At least one must be processed.")
return
# Get list of sequences to process
if sequences is None or len(sequences) == 0:
# Process all subdirectories in dataset
sequences = [d for d in os.listdir(dataset)
if os.path.isdir(os.path.join(dataset, d))]
sequences.sort()
log.info(f"Found {len(sequences)} sequences in dataset: {sequences}")
else:
log.info(f"Processing {len(sequences)} specified sequences: {sequences}")
if list_unprocessed:
processed_dir = output_dir
done = set()
if os.path.isdir(processed_dir):
for name in os.listdir(processed_dir):
meta = os.path.join(processed_dir, name, "metadata.json")
if os.path.isfile(meta):
done.add(name)
unprocessed = [s for s in sequences if s not in done]
log.info(f"Sequences not yet processed ({len(unprocessed)}): {unprocessed}")
return
# Process each sequence
success_count = 0
total_synced_frames = 0
failed_sequences = []
for i, seq_name in enumerate(sequences, 1):
seq_path = os.path.join(dataset, seq_name)
if not os.path.isdir(seq_path):
log.warning(f"Sequence directory not found, skipping: {seq_path}")
failed_sequences.append((seq_name, "directory not found", 0))
continue
log.info(f"\n[{i}/{len(sequences)}] Processing sequence: {seq_name}")
success, num_frames, reason = process_sequence(
sequence_dir=seq_path,
no_radar=no_radar,
no_camera=no_camera,
no_dji=no_dji,
rgb_codec=rgb_codec,
no_doppler=no_doppler,
pcd=pcd,
base_output_dir=output_dir,
log=log,
)
if success:
success_count += 1
total_synced_frames += num_frames
log.info(f"✓ Successfully processed: {seq_name} ({num_frames} synced frames)")
else:
failed_sequences.append((seq_name, reason or "processing failed", num_frames))
log.warning(f"✗ Failed to process: {seq_name}")
# Summary
log.info("\n" + "="*80)
log.info("Processing Summary")
log.info("="*80)
log.info(f"Total sequences: {len(sequences)}")
log.info(f"Successfully processed: {success_count}")
log.info(f"Failed: {len(failed_sequences)}")
log.info(f"Total synced frames saved: {total_synced_frames}")
if failed_sequences:
log.warning("\nFailed sequences:")
for seq_name, reason, _ in failed_sequences:
log.warning(f" - {seq_name}: {reason}")
log.info(f"\nOutput directory: {os.path.abspath(output_dir)}")
if __name__ == "__main__":
tyro.cli(main)