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# make input file master file for ld store of each region # i.e. the master file will be a two lines file, one header, one content #!/usr/bin/env Rscript args = commandArgs(trailingOnly=TRUE) trait <- as.character(args[1]) maf <- 0.01 library(data.table) source("/fs/projects/ukbb/yu/src/BOLT2z.R") ################...
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#' @title Get max runtime of queue #' #' @description Check the input string of queue and the maximum runtime available for that queue #' #' @param queue String. User supplied queue #' #' @return a string of run-time in format \code{DD:HH:MM:SS} #' #' @export get_max_runtime_by_queue <- function(queue) { if (queue %l...
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library(data.table) library(dplyr) library(lubridate) library(stringr) gas_file <- list.files("./data", full.names = TRUE) gas_dfs_dt <- lapply(gas_file, fread) gas_dt <- rbindlist(gas_dfs_dt) gas_dt <- gas_dt[, c("State Name", "County Name", "City Name", "Local Site Name", "Date Local", "Paramete...
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library(tidyverse) library(ggalluvial) library(RColorBrewer) # Load in previously cleaned data from OHL scrape my_data <- read_csv("~/Documents/hockey/OHL_OIR/my_data.csv") # create data frame based on team and goal scorer who_contributed <- my_data %>% filter(scoring_team == "FLNT", goal.scorer == "Ty Del...
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step_winsorise_new <- function( terms = NULL, role = NA, skip = FALSE, trained = FALSE, predictor_column_names = NULL, outcome_column_name = NULL, id = NULL ) { recipes::step("winsorise", terms = terms, role = role, skip = skip, trained = trained, predictor_column_names = ...
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x = scan("u:/meth1/Rfiles/ozone2.DAT") n = length(x) y = abs(x) ly = log(y) s = sum(ly) yt0 = log(x) varyt0 = var(yt0) Lt0 = -1*s - .5*n*(log(2*pi*varyt0)+1) th = 0 Lt = 0 t = -2.01 i = 0 while(t < 2) {t = t+.001 i = i+1 th[i] = t yt = (x^t -1)/t varyt = var(yt) Lt[i] = (t-1)*s - .5*n*(log(2*pi*varyt)+1) if(abs(th[i])<...
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function(input, output, session) { output$mychart <- renderLineChart({ # Return a data frame. Each column will be a series in the line chart. data.frame( Sine = sin(1:100/10 + input$sinePhase * pi/180) * input$sineAmplitude, Cosine = 0.5 * cos(1:100/10), "Sine 2" = sin(1:100/10) * 0.25 + ...
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# Call Packages dplyr, bindrcpp & ggplot2 library(dplyr) library(bindrcpp) library(ggplot2) png("plot3.png", width=480, height=480) # Baltimore yearly emmisisons data baltYrTypEmm <- aggregate(Emissions ~ year+ type, baltdata, sum) # plot3.png chart <- ggplot(baltYrTypEmm, aes(year, Emissions, color =...
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# 1. In bn.mle compare distribution of O|A with corresponding one from querygrain junction.mle <- compile(as.grain(bn.mle)) jage.young <- setEvidence(junction.mle, "A", states="young") jage.old <- setEvidence(junction.mle, "A", states="old") # P(O) querygrain(junction.mle, nodes = "O")$O # P(O | A = young) querygrain(j...
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Renv = new.env(parent = globalenv()) FLenv = as.FL(Renv) Renv$data <- sqlQuery(connection,paste0("SELECT DataSetID,Gender,TIME_VAL,STATUS ", " FROM vwWHAS100 ORDER by 1,2")) Renv$fit <- dlply(Renv$data,c("DataSetID","Gender"), function(x) survival::...
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context("lang-expr") # expr_text() -------------------------------------------------------- test_that("always returns single string", { out <- expr_text(quote({ a + b })) expect_length(out, 1) }) test_that("can truncate lines", { out <- expr_text(quote({ a + b }), nlines = 2) expect_equal(out, "{...
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library(dplyr) library(stringr) library(ggplot2) SCC <- readRDS("Source_Classification_Code.rds") NEI <- readRDS("summarySCC_PM25.rds") # identify all coal sources coalSources <- SCC %>% filter(str_detect(EI.Sector, 'Coal')) # total emissions from coal sources grouped by year coalEmissions <- NEI %>% filter(SCC ...
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## We will make a special matrix object called CacheMatrix, which will cache the inverse of the matrix within itself ## and contain a list of functions to get and set the matrix and the inverse ## This function creates a CacheMatrix object and optionally initializes the matrix makeCacheMatrix <- function(x = matrix()...
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#Get a percentage string from a decimal #' Decimal to percent #' #' Function takes a decimal value and returns it formatted as percentage. #' #' @param x integer or list of interger that need to be formated as percentage #' @param digits Number of digits after decimal point to retain. Defaults to 2 #' @return The li...
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# File src/library/base/R/dynload.R # Part of the R package, https://www.R-project.org # # Copyright (C) 1995-2018 The R Core Team # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either ...
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#' Helper to define the contents of a pillar #' #' This function is useful if your data renders differently depending on the #' available width. In this case, implement the [pillar_shaft()] method for your #' class to return a subclass of "pillar_shaft" and have the [format()] method #' for this subclass call `new_orna...
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## These functions cache a matrix and its inverse, to avoid recalculating its inverse if it's already known. ## makeCacheMatrix() creates a special matrix object that can cache the matrix itself, ## and can cache its inverse. If "M" is an invertible matrix, and "M-1" its inverse, ## makeCacheMatrix(M) will cache M, a...
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if (require("ggplot2") == FALSE) { install.packages("ggplot2") require("ggplot2") } data(diamonds) summary(diamonds) df[sapply(df, is.factor)] print("Number of Observations: ") nrow(diamonds) print("Number of Variables: ") ncol(diamonds) i <- 0; print("Number of ordered variables") for (name in sapply(diamonds...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/activity_instance_id.R \name{activity_instance_id} \alias{activity_instance_id} \title{Activity instance classifier} \usage{ activity_instance_id(eventlog) } \arguments{ \item{eventlog}{An object of class \code{eventlog}.} } \descr...
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#deploy_MultiLabLeaderboard.R #install.packages('rsconnect') library(rsconnect) deployApp()
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{nse_BB} \alias{nse_BB} \title{Individual stocks 1 Minute Chart data} \format{A data frame with five variables: \code{id}, \code{date}, \code{time}, \code{open}, \code{high}, \code{low} , \code{close} and \code{vol}...
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stop('this function should be obtained via purl') dominates <- function(a,b){ # does a dominate b? any(a>b)&!any(a<b) } #helper function singledom <- function(p,front){ stopifnot(is.data.frame(p) & nrow(p)==1) # this also covers NULL for(i in 1:nrow(front)){ a=front[i,] if(dominates(a,p)){ retu...
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# This will be the home screen for doing several different functins using R # Sync r and github 12/1 # Clean up prox data and assign clean data set to the desktop for import source("proxClean.R") proxClean() # Most demos in a specific month for top n canvassers---- source("mostDemos.R") # Load the data into an...
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#install.packages("pheatmap") library(pheatmap) inputFile="input2.txt" groupFile="group2.txt" outFile="heatmap.pdf" setwd("E:\\Lenvatinib\\TIME") rt=read.table(inputFile,header=T,sep="\t",row.names=1,check.names=F) #读取文件 Type=read.table(groupFile, header=T, sep="\t", row.names=1, check.nam...
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ufo <- read.csv ("ufo.us.csv") ufo$DateOccurred <- as.character (ufo$DateOccurred) ufo$DateOccurred <- as.Date (ufo$DateOccurred) ufo$month <- months.Date (ufo$DateOccurred) month.occurence <- table (ufo$month) # on ré-ordonne les mis dans l'ordre de l'année # il faut un as.table() pour que l'objet demeure de classe ta...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RcppExports.R \name{order_cpp} \alias{order_cpp} \title{Order in C++} \usage{ order_cpp(x) } \arguments{ \item{x}{numeric vector} } \value{ same length vector of integers representing order of input vector } \description{ Simply finds the ord...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/aki.R \docType{data} \name{aki_stages} \alias{aki_stages} \title{AKI Stages} \format{ An object of class \code{ordered} (inherits from \code{factor}) of length 4. } \usage{ aki_stages } \description{ Ordered factor of AKI stages } \details{ S...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rich.R \name{input_rich} \alias{input_rich} \title{Rich data input} \usage{ input_rich(pdata_file, exprs_file) } \arguments{ \item{pdata_file}{character(1) The path to the phenotype data file} \item{exprs_file}{character(1) The path to the e...
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#Ebert/Rider #Created 16 April 2016 #Purpose: Create sentiment score map of LA2014 data. #load a little bit of sample data from x load(file = paste(storage.directory, "x1.RData", sep = "")) x1 = x1[x1$username != "GoldstarPgh",] #remove friggin Pittsburgh newspaper and its >3000 tweets x1 = x1[x1$username != "Gold...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/loss_functions.R \name{compute_log_lik} \alias{compute_log_lik} \title{Compute Negative Log Likelihood} \usage{ compute_log_lik(prediction, actual) } \arguments{ \item{prediction}{Numeric vector same length as actual} \item{actual}{Numeric v...
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library(xts) setwd("C:/Users/JOAO VICTOR/Desktop/env/desafio-datathon") shangai <- read.csv(file = "dado_shangai.csv", fill = FALSE) hong_kong <- read.csv(file = "dado_hongkong.csv", fill = FALSE) crypto <- read.csv(file = "dados_crypto.csv", fill = FALSE) trans_ts <- function(data_prices){ #transforma em time series...
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library(dplyr) hpc_data <- read.table("household_power_consumption.txt", header = TRUE, sep = ";") # dim(hpc_data); names(hpc_data); head(hpc_data); str(hpc_data) # length(grep("^(1/2/2007|2/2/2007)$", hpc_data$Date)) hpc <- hpc_data[grepl("^(1/2/2007|2/2/2007)$", hpc_data$Date), ] hpc$DateTime <- paste(hpc$Date, hp...
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% Copyright (c) 2012-2016 Russell V. Lenth % \name{lsmip} \alias{lsmip} \alias{lsmip.default} \alias{pmmip} \title{ Least-squares (predicted marginal) means interaction plot } \description{ This function creates an interaction plot of the least-squares means based on a fit...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/set.R \name{set} \alias{set} \title{Set} \usage{ set() } \description{ A set object. }
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## Library if(!require(tidyverse)) install.packages("tidyverse", repos = "http://cran.us.r-project.org") if(!require(caret)) install.packages("caret", repos = "http://cran.us.r-project.org") if(!require(leaflet)) install.packages("leaflet") if(!require(randomForest)) install.packages("randomForest") library(tidyvers...
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## plot3.R plots "Sub_metering_1", "Sub_metering_2" and "Sub_metering_3 from ##the "House Power Consumption" Dataset for a specified dates original_data <- # importing the data set read.table( "household_power_consumption.txt", header = TRUE, sep = ';', stringsAsFactors = F ) original_data$Date ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/shinyExplorer.R \name{shinyExplorer} \alias{shinyExplorer} \title{Run shinyMlr} \usage{ shinyExplorer(...) } \arguments{ \item{...}{[\code{any}]\cr Additional arguments passed to shiny's \code{runApp()} function.} } \description{ Run a local ...
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#' Stackloss data #' #' Observations from 21 days operation of a plant for the oxidation #' of ammonia as a stage in the production of nitric acid. #' #' Format: 21 cases and 4 continuous variables. #' Description: The columns are: #' 1. air flow #' 2. cooling water inlet temperature (C) #' 3. acid concentration (%) #'...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/abiotics_rescaling.R \name{abiotics_rescaling} \alias{abiotics_rescaling} \title{Title Rescale abiotics data to 10 or 30 arcmins} \usage{ abiotics_rescaling( flo1k_data, worldclim_data, earthenv_data, minlat, maxlat, minlong, ma...
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################################################## #randomForest ################################################## # 결정트리(Decision tree)에서 파생된 모델 # 랜덤포레스트는 앙상블 학습기법을 사용한 모델 # 앙상블 학습 : 새로운 데이터에 대해서 여러 개의 Tree로 학습한 다음, # 학습 결과들을 종합해서 예측하는 모델(PPT 참고) # DT보다 성능 향상, 과적합 문제를 해결 #분류절차 : 여러개 Tree 학습 -> 모델 -> 종합(Voti...
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#' Get historical metrics of the TRON blockchain #' #' Retrieves historical values of the blockhain statistics #' #' @param days (double): number of days to look back (defaults to 14 days). #' @param include_current_date (boolean): whether the current date's statistics #' (as of the query time) should be returned. D...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/optimize_ref_temp.R \name{optimize_refTemp} \alias{optimize_refTemp} \title{Optimization of the Reference Temperature} \usage{ optimize_refTemp(temp_ref0, lower, upper, inactivation_model, parms, temp_profile, parms_fix, n_times = 100) } \a...
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# The following script assumes the "Individual household electric power consumption Data Set" resides in your working directory. # Load data df <- read_csv2("household_power_consumption.txt", n_max = 100000) # Subset the data df$Date <- as.Date(df$Date, format = "%d/%m/%Y") new_df <- subset(df, df$Date == "2007/02...
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# Clear workspace rm(list = ls()) # Setup ################################################################################ # Packages library(raster) library(ggplot2) library(tidyverse) # Directories codedir <- "code" sppdir <- "data/species/data" outputdir <- "/Volumes/GoogleDrive/Shared drives/emlab/projects/curr...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/load_extra_iots.R \name{load_extra_iots} \alias{load_extra_iots} \title{Load extra data to multiple IOTs.} \usage{ load_extra_iots(iots, extra, directory = get("dir_data", envir = paramEnv)) } \arguments{ \item{iots:}{List of Input-Output Tab...
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#The ROCR package for various plots and performance assessments library(ROCR) library(PRROC) #The data from the attribute comparisons. ident_all <- read.csv('identity.csv') # Display the data structure. The origin and target variables identify the # two profiles involved in the comparison. The block variable identifi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/study-priors_analyze.R \name{priors_analyze} \alias{priors_analyze} \title{Function \code{priors_analyze}} \usage{ priors_analyze(from, to) } \arguments{ \item{from}{to directory to save simulations and results} \item{to}{output directory} }...
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## Execute this code after loading the data in the table "data" with values in the column name "value" library(tseries) actual<-ts(dataset$Value,frequency = 12,start = c(2014,1)) Decompose_Actual <- decompose(actual) seasonal <- Decompose_Actual$seasonal trend <- Decompose_Actual$trend deseason <- actual-seasonal...
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library(RNetCDF) source('~/Dropbox/netcdf_test/CreateNetCDF.R', chdir = TRUE) source('~/Documents/TimeSeries/createNetCDF/phaseshiftest.R', chdir = TRUE) olddir=getwd() setwd("~/Dropbox/netcdf_test/") data=open.nc("SST_Xiao.nc") lat=var.get.nc(data,'lat') lon=var.get.nc(data,'lon') sst=var.get.nc(data,'sst',collapse=F...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/davies_bouldin.R \name{davies_bouldin} \alias{davies_bouldin} \title{davies_bouldin function} \usage{ davies_bouldin(X, clust, distance = "euclidean") } \arguments{ \item{X}{data_frame or matrix of features must be numeric} \item{...
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#install.packages("Amelia") #library(Amelia) columnNames <- c( "class", "cap_shape", "cap_surface", "cap_color", "bruises", "odor", "gill_attachement", "gill_spacing", "gill_size", "gill_color", "stalk_shape", "stalk_root", "stalk_surface_above_ring", "stalk_surface_below_ring", "stalk_color_above_ring", ...
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library(leaflet) library(dplyr) webtech_berlin <- read.csv("data/webtech_located.csv", stringsAsFactors=FALSE) label <- paste(sep = "<br/>", webtech_berlin$Firma, webtech_berlin$URL) WebtechKarte <- leaflet(data = webtech_berlin) %>% addTiles() %>% # Add default OpenStreetMap map tiles addMarkers(lng= ~Lon, lat=...
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indeed_data <- read.csv("raw-data-datafest2018.csv", header = T , na.strings = c("" , "NA")) indeed_data$educationRequirement <- as.character(indeed_data$educationRequirement) indeed_data$educationRequirement[indeed_data$educationRequirement == "None"] <- "0" indeed_data$educationRequirement[indeed_data$educationRequi...
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rm(list = ls()) gc() load("trainEnsemble.RData") load("valid1Ensemble.RData") load("valid2Ensemble.RData") load("testEnsemble.RData") dt.test.ensemble[, rf:= 1 - rf] # try simple blending with rf[, 2] pred.bagging <- rowSums(dt.test.ensemble) dt.submit <- data.table(Account_ID = dt.test$ACCOUNT_ID, Prediction = pred...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sesv2_operations.R \name{sesv2_get_deliverability_test_report} \alias{sesv2_get_deliverability_test_report} \title{Retrieve the results of a predictive inbox placement test} \usage{ sesv2_get_deliverability_test_report(ReportId) } \arguments{...
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#' Executing Nonmem against supported models #' ========================================================================================= #' ========================================================================================= #' Initialisation if(!exists(".MDLIDE_WORKSPACE_PATH") || is.null(.MDLIDE_WORKSPACE_PATH...
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library(tidyverse) library(here) joinedTib <- read_tsv(here('extractedData', 'joinedTablePeaksNearGenes.annotated.tsv')) geneTib <- read_tsv(here('extractedData', 'DeSeqOutputAllConds.annotated.tsv')) peakTib <- read_tsv(here('extractedData', 'differentialAtacPeaks.annotated.tsv')) n.permutations.to.make.null.dis...
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library(quantmod) library(PerformanceAnalytics) library(RiskPortfolios) library(tidyr) library(dplyr) library(ggplot2) symbols = c('SPY', # 미국 주식 'IEV', # 유럽 주식 'EWJ', # 일본 주식 'EEM', # 이머징 주식 'TLT', # 미국 장기채 'IEF', # 미국 중기채 'IYR', # ...
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## `run.edgeR.on.simulation.R' contains scrits to run edgeR on simulated data. ## ## ## Example Usage (see command in /mnt/lustre/home/shim/multiscale_analysis/analysis/simulation/sample_size/simulation_manyQTLfinal_v1/sum/edgeR/com/): R CMD BATCH --no-save --no-restore "--args wd.path='/mnt/lustre/home/shim/multiscal...
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annotation.r
anno <- read.table("V4_transcript_annotation_0331.txt", sep = '\t', header=T, stringsAsFactors=F) bioType <- sort(table(anno[['gene_biotype']]), decreasing=T) src <- sort(table(anno[['source']]), decreasing=T) write.table(bioType, file = 'bio_type.txt', col.names=F, quote=F, sep = '\t') write.table(src, file = 'source....
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simulate_SIR.R
#' Simulate an epidemic with SIR dynamics and draw binomial samples. #' #' @param obstimes vector of observation times #' @param params vector of parameters, must be in the following order: beta, mu, #' rho, S0, I0, R0 #' @param popsize population size #' @param init_config compartment counts at t0. #' @param trim ...
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TopoS.Rd.R
library(klaR) ### Name: TopoS ### Title: Computation of criterion S of a visualization ### Aliases: TopoS ### Keywords: internal ### ** Examples # Compute S for the MDS visualization of the german business data data(B3) plot(cmdscale(dist(B3[, 2:14])), col = rainbow(4)[B3[, 1]], pch = 16) TopoS(dist(B3[, 2:14]), di...
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#### ---- Project: APHRC Wash Data ---- #### ---- Task: Simulation ---- #### ---- Complex Diagnostics ---- #### ---- By: Steve and Jonathan ---- #### ---- Date: 2019 May 06 (Mon) ---- library(dplyr) library(tidyr) library(tibble) library(ggplot2) library(gridExtra) library(lme4) library(lattice) library(dotwhisker) t...
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#read raw data x1 <- read.table(".\\UCI HAR Dataset\\train\\X_train.txt") y1 <- read.table(".\\UCI HAR Dataset\\train\\y_train.txt") s1 <- read.table(".\\UCI HAR Dataset\\train\\subject_train.txt") x2 <- read.table(".\\UCI HAR Dataset\\test\\X_test.txt") y2 <- read.table(".\\UCI HAR Dataset\\test\\y_test.txt") s2 <- r...
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sample_mean <- 871; # sample mean hypothesized_value <- 880; # hypothesized value sigma <- 21; # standard deviation sample_size <- 50; # sample size z <- round(((sample_mean - hypothesized_value)/(sigma/sqrt(sample_size))),2) z # test sta...
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#'simulation d´une chaine de markov a espace des etats fini #'@export #'@param P matrix of transition #'@param mu numeric vector of initial distrebution #'@param n numeric number of repetition SimCMk=function(P,mu,n){ m=length(mu) y=c(seq(1,m,1)) x=c(rep(0,n+1)) t=c(0:n) x[1]=rdist(y,mu) for(i in 1:n){ ...
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#Prediction using random forest model rf.test<-testingDataSet #Creating vector of target variable rf.label <- as.factor(trainingDataSet.clean.equal$y) #Changing yes and no to 1 and 0 for making lable compatible to Random forest model rf.label <- ifelse(rf.label=="yes", 1, 0) str(rf.label) table(rf.label) ...
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dot.plots.per.class.ext <- function(dat_plot, set, p_effect = 0.8, sel_effect = F, dvc = "png") { require(egg) require(grid) require(cowplot) # define variables for heatmaps vars.fc <- c("del_pl_bl","del_d_3i_0i","del_c_3i_0i","del_del_str_inf") #,"del_d3i_c3i" # define observations for heatmaps...
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############################################################################ # ############################################################################ library("aroma.seq"); organism <- "Homo_sapiens"; # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # Indexing a reference genom...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/isotope-maneuvers.R \name{group_birds_by_location} \alias{group_birds_by_location} \title{Group bird isotope data by locations} \usage{ group_birds_by_location( D, feather_isotope_col, location_col, iso_pred_col = "iso_pred", iso_sd...
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f <- function(x) { 2*x^2 + 1 } x <- c(0:10) plot(x,f(x), type="l", col="red") abline(70, 0) grid()
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/features.R \name{subsetExons} \alias{subsetExons} \title{Extract first/last exons depending on strand takes the first hit after sorting} \usage{ subsetExons(exon_dt, by, which = "first", strand = "both") } \arguments{ \item{by}{sorting criter...
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credge_data <- read.csv(file.choose(),header = T,na.strings=c(""," ","- ","_","NA")) credge_data <- read.csv(file.choose(),header = T) View(credge_data) names(credge_data) attach(credge_data) str(credge_data) #keeping copy data <-credge_data attach(data) library(gplots) library(ROCR) library(Rcpp) li...
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#################################### ### Curso R - UCE ### ### Clase 07 ### #################################### # 1. Análisis de regresión ------------------------------------------------- # Prerrequisitos paquetes <- c('tidyverse','GGally','openxlsx','MASS','hexbin','modelr','l...
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library(shiny) library(ggplot2) library(dplyr) shinyServer(function(input,output) { diamonds<-diamonds[,1:7] dat<-reactive({ data<-subset(diamonds,cut==input$cut & color==input$color & clarity==input$clarity & price %in% seq(input$price[1],input$price[2])) if(input$asc){ ...
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#' Class rateModel #' #' Class \code{rateModel} holds a rate model for a set of alleles #' #' @slot alleleData an allele data object in a locked environment #' @slot edgeGroups a data.table with four columns: parent, child, edgeGroup. All parent-child combos must be valid for alleleData object. #' @slot rateFormula A f...
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# Prashant Bhuyan # R, RStudio and PostregSQL have been properly installed and that the DMwR # package has been properly loaded and installed. # 1) What Version of R & RStudio do you have installed? # # (Answer) I have installed Version 3.0.3 (2014-03-06) of R. I have also installed # Version 0.98.501 – © 200...
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### 극단치와 이상치 제거하기 ## 07-1 빠진 데이터를 찾아라! - 결측치 정제하기 # 결측치 찾기 df <- data.frame(sex = c("M", "F", NA, "M", "F"), score = c(5, 4, 3, 4, NA)) df # 유의점 # - 문자로 구성된 변수는 NA가 <>에 감싸진 형태로 출력됨. # - NA 앞뒤에는 겹따옴표가 없다. 따옴표가 있으면 결측치가 아니라 영문자 "NA"를 의미 is.na(df) # 결측치 확인 ...
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# Solution attempt 4: Logistic Regression + Other Files # Final submission: 2018-06-14 # Submission score: 0.712 # In addition to new tweaks to the data, information from other files will be added in to try to # improve predictions. library(ROCR) library(feather) library(plyr) library(dplyr) has_NAs <- function(x){ ...
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\name{Anthropometry-package} \alias{Anthropometry-package} \docType{package} \title{ Statistical Methods for Anthropometric Data } \description{ Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Erg...
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## A script to calculate the corpus-wide frequencies of combined variables with values > 0. ## These frequencies will be used to select a subset of combined variables for further processing. require(XML) require(tidyverse) require(stringr) input.dir <- "./output_2" files.v <- dir(path=input.dir, pattern=".*xml") y...
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UnivarMixingDistribution <- function(..., Dlist, mixCoeff, withSimplify = getdistrOption("simplifyD")) { ldots <- list(...) if(!missing(Dlist)){ Dlist.L <- as(Dlist, "list") if(!is(try(do.call(UnivarDistrList,args=Dlist.L),silent=TRUE),"try-error")) ...
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#-----------------------------------------------------------# # # # make.Mondrian.planning.units.R # # # # Make a planning unit map. This is for use with th...
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# Copyright 2018-2019 Faculty Science Limited #' Copy from Faculty datasets to the local filesystem. #' #' @param datasets_path File path on Faculty datasets #' @param local_path The destination path on the local filesystem. #' @param project_id The ID of the project; by default, the current project is used. #' @expor...
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house<-read.table("~/household_power_consumption.txt",nrows=1,header=TRUE,na.strings="?",sep=";") house<-read.table("~/household_power_consumption.txt",skip=397+60*24*15,nrows=60*24*2,header=FALSE,na.strings="?",sep=";",col.names=y,colClasses=sapply(house,class)) house$index=c(1:2880) plot(house$index, house$Sub_meteri...
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#------------------------------------------------------------------ ################## #' M out of N Bootstrapped Loess Confidence Intervals ################## #' #' @param x,y coordinates #' @param breps number of bootstrap replications #' @param mfun function to define m out of n subsample #' @param confidence CI in...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mc_utils.R \name{load_ctap_mc_measurement} \alias{load_ctap_mc_measurement} \title{Load CTAP MC measurement sheet/table} \usage{ load_ctap_mc_measurement(mc_file, measurement_sheet, dateformat = "\%d.\%m.\%Y") } \arguments{ \item{mc_file}{c...
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library(data.table) library(reshape2) filename<-"Dataset.zip" ## Download and unzip the dataset if(!file.exists(filename)){ fileURL <- "https://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip" download.file(fileURL, filename, method="curl") } if (!file.exists("UCI HAR D...
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library(data.table) library(dplyr) #The dates that we will graph for this exersize begintime <- strptime("2007-02-01 00:00:00", "%Y-%m-%d %H:%M:%S") endtime <- strptime("2007-02-03 00:00:00", "%Y-%m-%d %H:%M:%S") # Read the datafile hpc.df <- read.table("household_power_consumption.txt", header = TRUE, sep=";", ...
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context("mungepiece") library(testthatsomemore) describe("errors", { test_that("it cannot run a mungepiece without arguments", { mb <- mungebit$new() mp <- mungepiece$new(mb) expect_error(mp$run(), "is missing, with no default") }) test_that("it cannot initialize a mungepiece with a non-mungebit", {...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/anti_join.r, R/full_join.r, R/inner_join.r, % R/left_join.r, R/semi_join.r \name{anti_join.disk.frame} \alias{anti_join.disk.frame} \alias{full_join.disk.frame} \alias{inner_join.disk.frame} \alias{left_join.disk.frame} \alias{semi_...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/profile_generation.R \name{normalise} \alias{normalise} \title{Normalise heart rate in profile} \usage{ normalise(profile) } \arguments{ \item{profile}{profile to be nomalised. See \code{\link{get_profile}} for a description of profile.} } \v...
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# safe version of setMethod(). tryMethod = function(f, signature, definition, generic) { # try a first time. catch = try(setMethod(f, signature, definition), silent = TRUE) if (is(catch, "try-error")) { # if it failed, create a generic function ... setGeneric(f, generic) # ... and then try again. ...
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############################################################################## #' generate data #' #' @details description, a paragraph #' @param DataObj =NULL: simulated data with given seed or a data frame with real data #' @param seed numeric value used to generate simulated data #' @param nPoints number of generate...
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library(clttools) ### Name: dice.plot ### Title: Theoretical Probability Distribution Plot of Rolling Dice ### Aliases: dice.plot ### ** Examples dice.plot(n = 4, col ='red', type = 'p') dice.plot(3, prob = c(0.3, 0.1, 0.2, 0.1, 0.1, 0.2))
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# an alternative way to plot these length weight values via nls #NOTE: I was also able to plot these values via nls (non-linear least squares) in case I need to do this again!! # nls- non-linear regression model- an alternative way to estimate parameters ####################### # i followed instructions from https://s...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/forecast_hmnc.R \name{forecast_hmnc} \alias{forecast_hmnc} \title{Forecasting via Harmonic Regression Model} \usage{ forecast_hmnc(model, par = list(season = c(7, 365.25), K = c(3, 30)), h = 30) } \arguments{ \item{model}{An object of class \...
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### twunity ---- get_trial_start_id.twunity <- function(obj, trialId){ if(trialId <= 1) return(NULL) return(get_trial_goal_id.twunity(obj, trialId - 1)) } get_trial_start.twunity <- function(obj, trialId){ #First trial is started in a center hall iStart <- get_trial_start_id.twunity(obj, trialId) if(is.null(i...