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context("loadResults") test_that("loadResults", { reg = makeTestRegistry() ids = 1:2 batchMap(reg, identity, ids) submitJobs(reg) waitForJobs(reg) ys1 = 1:2 ys2 = loadResults(reg, simplify=TRUE, use.names="none") expect_equal(ys1, ys2) ys1 = as.list(ys1) ys2 = loadResults(reg, simplify=FALSE, use.n...
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script_pdsi.R
# Load packages library(RCurl) library(raster) library(rgdal) library(maptools) library(rasterVis) # Set the directory di <- '/Users/ajpeluLap/myrepos/pdsiSpatial/' setwd(di) #### run only a time!!!!! ######## ## Raster data about scPDSI ## http://www.wrcc.dri.edu/wwdt/archive.php?folder=scpdsi ## Loop to downloa...
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library(AppliedPredictiveModeling) library(caret) data(AlzheimerDisease) adData = data.frame(diagnosis,predictors) trainIndex = createDataPartition(diagnosis, p = 0.50,list=FALSE) training = adData[trainIndex,] testing = adData[-trainIndex,]
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visualize-doy.R
visualize.doy <- function(viz = getContentInfo(viz.id = "doy-NM")){ library(svglite) library(dplyr) library(xml2) daily <- readData(viz[["depends"]][["daily"]]) zoomer <- readData(viz[["depends"]][["zoomer"]]) zoomer.xml <- read_xml(zoomer) doy_svg = svglite::xmlSVG({ par(omi=c(0,0,0,0), mai=...
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determineSynonymous.Rd.R
library(rnaseqWrapper) ### Name: determineSynonymous ### Title: Determine whether or not variants are synonomous ### Aliases: determineSynonymous ### ** Examples ## Load needed data data(varScanExample) data(fastaExample) determineSynonymous(varTable=varScanExample, refPosCol=2, ...
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Kmeans_after_PCA.R
--- title: "K-means Clustering after PCA for wine dataset" author: "Amol Deshmukh" date: "April 7, 2019" output: html_document --- ```{r} library(dplyr) library(ggplot2) ``` ```{r} wine_kaka %>% ggplot(aes(fixed.acidity, alcohol)) + geom_point() wine_kaka %>% summary() ``` ```{r} wine_kaka %>% ggplot(aes(ci...
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library(shiny) library(shinyFiles) library(jsonlite) library(tidyverse) library(DT) library(rjson) library(httr) library(stringi) library(RJSONIO) post_data <- function(resourceType, data){ POST(paste0('http://hackathon.siim.org/fhir/',resourceType), add_headers('apikey' = Sys.getenv(x='SiimApiKey'), ...
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read_fb.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read_fb.R \name{read_fb} \alias{read_fb} \title{Read and Format GPA Facebook Data} \usage{ read_fb(df_reactions_dir, df_engagement_dir) } \arguments{ \item{df_reactions_dir}{Directory to GPA Facebook post reaction types data (must contains 'p...
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varExp_Gaussian.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/supplementary_functions.R \name{varExp_Gaussian} \alias{varExp_Gaussian} \title{Compute the variation expalined raitios when Gaussian data is used} \usage{ varExp_Gaussian(X, mu, A, B, Q) } \arguments{ \item{X}{a \eqn{n*d} quantitative data s...
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akhikolla/testpackages
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Vpmiss.Rd
\name{Vpmiss} \alias{Vpmiss} \title{Partial Missing Value of a VARMA Series } \description{Assuming that the data is only partially missing, this program estimates those missing values. The model is assumed to be known. } \usage{ Vpmiss(zt, piwgt, sigma, tmiss, mdx, cnst = NULL, output = T) } \arguments{ \item{zt}{...
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ui.R
library(shiny) shinyUI(fluidPage( # Define the header for the page titlePanel("An Exciting Shiny App to Print Dates!"), # Set up the page to have a sidebar sidebarLayout( # Define the contents of the sidebar sidebarPanel( dateInput(inputId = "dateInput", label...
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ambro01/nanopore_qc_mbi
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server.R
library(IONiseR) library(minionSummaryData) library(ggplot2) library(gridExtra) library(poRe) source('global.R') source('ui.R') source('server_ioniser.R') source('server_pore.R') source('server_poretools.R') server <- function(input, output, session) { # wszystko co laczy sie z odczytywanie stanu kontrolek na wido...
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lr-ud-predictor.R
library(RWeka) library(rJava) args <- commandArgs(trailingOnly = TRUE) file_lr <- "./../../data/dataset/training.lr.arff" data_lr <- read.arff(file_lr) file_ud <- "./../../data/dataset/training.ud.arff" data_ud <- read.arff(file_ud) # load the saved models for LR and UD predictors load(file="./adaboost.rf.lr....
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v2.R
## ---- echo = FALSE, eval=TRUE, include=FALSE---------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>") options(knitr.table.format = "html", rmarkdown.html_vignette.check_title = FALSE) library(eRTG3D) set.seed(123) ## ----eval=FALSE-----------------------------------------------------...
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iteration.R
# 5 Feb 2017 # Iteration # ********************* # Iteration in R # Sometimes we need to repeat the same sequence of commands seeral times. # Whenever you need to repeat the same action more than twice try to automate it and # apply iteration. # Loops in R # 1. For loops for (i in 1:5) { print(i) } # (i in 1:5...
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cran/rstackdeque
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% Generated by roxygen2 (4.0.2): do not edit by hand \name{head.rdeque} \alias{head.rdeque} \title{Return the first n elements of an rdeque as an rdeque} \usage{ \method{head}{rdeque}(x, n = 6L, ...) } \arguments{ \item{x}{rdeque to get the head of.} \item{n}{number of elements to get.} \item{...}{arguments to be pas...
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carlopacioni/bdskytools
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plotOUProcessPriors.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PlotPrior.R \name{plotOUProcessPriors} \alias{plotOUProcessPriors} \title{Parameters may be a prior or a constant Use getPrior to quote the prior function to be passed with parameters} \usage{ plotOUProcessPriors(x0_prior, t, mu_prior, sigma_...
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\name{stock.price} \alias{stock.price} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Computing stock prices } \description{ This function computes the intrinsic stock price using the constant growth dividend discount model. } \usage{ stock.price(dividend, k = NULL, g = NULL, ROE = NULL, b = NUL...
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simulated_genefamilies_analysis.R
library(tidyverse) library(magrittr) library(rlang) source("TwoStage_Package_Code.R") dat_calls <- read_tsv("DNApolymAIII/Calls_genefamilies-cpm.tsv")[-1,] %>% dplyr::select(1, Annotation = "EstID", label = "EstEC", 4:34) %>% replace_na(list(label = "unknown")) %>% as.data.frame factors <- cbind(names(dat_calls)[4:...
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bullwhip.R
bullwhip=function(method=c("MMSE","SMA","ES"),phi,L,p,alpha) { method <- match.arg(method) if (L==0){cat("L is at least one, the review period, ...\n") } else { if (method=="MMSE"){r<-1+2*phi*(1-phi^L)*(1-phi^(L+1))/(1-phi) } else{ if (method=="SMA"){r<-1+2*(1-phi^p)*((L/p)^2...
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% Copyright 2001 by Roger S. Bivand \name{droplinks} \alias{droplinks} \title{Drop links in a neighbours list} \description{ Drops links to and from or just to a region from a neighbours list. The example corresponds to Fingleton's Table 1, p. 6, for lattices 5 to 19. } \usage{ droplinks(nb, drop, sym=TRUE) } \argume...
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# ----------------------------------------------------------------------------. # This file is tangled from tinyplyr.org. | # (https://github.com/smxshxishxad/tinyplyr/blob/master/tinyplyrjmdatar.org) | # Do not edit by hand. | ...
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### Q1 xs <- scan(file.choose()) # Load data ys <- scan(file.choose()) # plot(xs,ys) df <- data.frame(x = xs, y = ys) df_sort <- df[order(df$x),] # sort values by x_i's rownames(df_sort) <- NULL # reset indices # part (a) ### Plot the CVRSS_k(s_hat_k) versus k and an explanation ### of the chosen span. odd_values <- ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/elevation.r \name{elevation} \alias{elevation} \title{Get elevation for lat/long points from a data.frame or list of points.} \usage{ elevation(input = NULL, latitude = NULL, longitude = NULL, latlong = NULL, key, ...) } \arguments{ \item{i...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/n2w.R \name{n2w} \alias{n2w} \title{Transform parameters from natural to working scale} \usage{ n2w(beta, rdist = c("fixed", "multistate", "exp", "gamma", "weibull"), r = NULL, sigma = NULL, shape = NULL, rate = NULL, gamma = NULL, xy = N...
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################################################################ ## Skript: 4 Plot-Techniken-drei-Variablen ## Studiengang: CAS Datenanalyse 16/17 ## Modul: Graphische Datenexploration und Datenvisualisierung ## Lernziele: Techniken der Datenexploration mit R - drei Variablen ## ###################...
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##正規性の検定 #シャピロ-ウィルク検定を採用 for (i in 2:length(att)){ att.norm<-shapiro.test(att[,i]) print(att.norm) } #以下p-valueが0.05以上の変数をTRUEそうでないものをFALSEとする。
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#' @export style_base <- function(textsize=7) { list( gg_text_size = grid::convertX(grid::unit(textsize, "points"), "mm", valueOnly = TRUE), gg_max_point_size = grid::convertX(grid::unit(0.1, "npc"), "mm", valueOnly = TRUE), theme_map = function(aspect_ratio = 1) { t <- theme( panel.grid = e...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dataset.R \docType{class} \name{Dataset} \alias{Dataset} \title{Create, update, delete and certify MicroStrategy datasets} \description{ When creating a new dataset, provide a dataset name and an optional description. When updating a pre-exis...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/alexaforbusiness_operations.R \name{alexaforbusiness_disassociate_device_from_room} \alias{alexaforbusiness_disassociate_device_from_room} \title{Disassociates a device from its current room} \usage{ alexaforbusiness_disassociate_device_from_...
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# function: install new packages and their dependencies ipak <- function (pkg) { new.pkg <- pkg[!(pkg %in% installed.packages()[, "Package"])] if (length(new.pkg)) install.packages(new.pkg, dependencies = TRUE) sapply(pkg, require, character.only = TRUE) } ## new packages can be added here packages <- c("re...
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library(dplyr); library(data.table) #download the zip file if it doesn't exist file_name<-"getdata_projectfiles.zip" if(!file.exists(file_name)){ download.file("https://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip",file_name,method="curl") } #unzip the file if not already done if(...
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library(tidyverse) library(readxl) library(broom) nm <- c("goal", "pressor_avg", "osmolality", "motility_agent") df <- read_excel("data/external/regression_data.xls", col_names = nm, skip = 1) %>% dmap_at(c("goal", "motility_agent"), ~ .x == 1) mod <- glm(goal ~ pressor_avg + osmolality + motility_agent, df, fam...
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#(Clase 1) Comandos básicos, Asignación de variables, #tipo de datos y operaciones en Rstudio #Print print("Hola mundo") "hola mundo" #Help help(summary) mean() #Sombreas + FI #Instalación de paquete y activamos el paquete install.packages("car") library(car) #Para saber donde está el directorio de trabajo getwd()...
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# DIF MANTEL-HAENZEL difMH<-function (Data, group, focal.name, anchor=NULL, match="score", MHstat = "MHChisq", correct = TRUE, exact=FALSE, alpha = 0.05, purify = FALSE, nrIter = 10, p.adjust.method=NULL, save.output = FALSE, output = c("out", "default")) { if (purify & match[1] != "score") ...
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\name{mantel} \alias{mantel} \title{ Mantel test } \description{ Simple and partial Mantel tests, with options for ranked data, permutation tests, and bootstrapped confidence limits. } \usage{ mantel(formula = formula(data), data, nperm = 1000, mrank = FALSE, nboot = 500, pboot = 0.9, cboot = 0.95) } \arguments{...
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# Make sure the library for read.csv.sql is loaded library(sqldf) # Set working folder setwd ("c:/R/ExploratoryA1") # Load the two days that we are interested in hpc <- read.csv.sql("household_power_consumption.txt", sql = "select * from file where Date in ('1/2/2007', '2/2/2007')", header = TRUE, sep =";",stringsAsF...
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library(devtools) library(MCPcounter) df<-read.csv("",header=TRUE,row.names=1) #replace the first gene_id column to HUGO_symbols mcpcounter_estimates <- MCPcounter.estimate(df,"HUGO_symbols") heatmap(as.matrix(mcpcounter_estimates),col=colorRampPalette(c("blue","white","red"))(100)) write.csv(mcpcounter_estimates,"")
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library(reshape2) # Set the working Directory and unzip and extract data setwd('C:/Users/ss45360/Documents/Coursera/UCI/'); filename <- "getdata_dataset.zip" if (!file.exists(filename)){ fileURL <- "https://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip " download.f...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{mutation_gene_data_solution} \alias{mutation_gene_data_solution} \title{Produced mutation_gene_data_solution} \format{ NULL @examples } \usage{ mutation_gene_data_solution } \description{ The solution to running ...
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#' Descriptive Statistics Report #' #' Generate graphics and LaTeX with descriptive statistics #' #' \code{dReport} generates multi-panel charts, separately for categorical analysis variables and continuous ones. The Hmisc \code{summaryP} function and its plot method are used for categorical variables, and \code{bppl...
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## Coercion for deb_decimal and deb_lsd prototypes ## # Create coercion hierarchy: numeric() -> deb_decimal() -> deb_lsd() # A) deb_decimal ---------------------------------------------------------- # 1. deb_decimal and deb_decimal ------------------------------------------ #' Coercion hierarchy for deb_decimal uni...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/MariaDBDriver.R \name{mariadbClientLibraryVersions} \alias{mariadbClientLibraryVersions} \title{MariaDB Check for Compiled Versus Loaded Client Library Versions} \usage{ mariadbClientLibraryVersions() } \value{ A named integer vector of lengt...
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#' Instantaneous value data retrieval from USGS (NWIS) #' #' Imports data from NWIS web service. This function gets the data from here: \url{http://waterservices.usgs.gov/} #' A list of parameter codes can be found here: \url{http://nwis.waterdata.usgs.gov/nwis/pmcodes/} #' A list of statistic codes can be found he...
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\name{simulate.R.K} \alias{simulate.R.K} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Simulate (R,K) } \description{ Simulate a split and the number of marks in each resulting subintervals } \usage{ simulate.R.K(beta, n) } %- maybe also 'usage' for other objects documented here. \arguments{ ...
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NEI <- readRDS("summarySCC_PM25.rds") SCC <- readRDS("Source_Classification_Code.rds") #subset for Baltimore & On Road baltimore <- NEI[NEI$fips=="24510" & NEI$type=="ON-ROAD",] # Aggregate by sum Baltimore emissions by year aggtotalyearBaltimore <- aggregate(Emissions ~ year, baltimore, sum) png('plot5.png') g <- g...
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library("dplyr"); library("magrittr"); setwd("C:/Users/Hou/Desktop/Home-Value-Prediction"); rm(list = ls()); Data <- read.csv("properties_2016.csv"); ## ## fips, latitude, longitude, ## propertylandusetypeid, rawcensustractandblock, ## regionidcounty, ## are the same missing 11437# data. index <- 1:nrow(Data); Dat...
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# Funções para auxiliar a análise removeAcentos = function(vetor){ #=================================================================================== # Remove acentos de um vetor, considerando se o Encoding deste é UTF-8 ou unknown. # Outros tipos de enconding não foram considerados #====================...
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# Jake Yeung # Date of Creation: 2019-12-20 # File: ~/projects/scchic/scripts/scripts_analysis/debugging_rerun/check_LDA.R # Check LDA output rm(list=ls()) library(dplyr) library(tidyr) library(ggplot2) library(data.table) library(Matrix) library(topicmodels) library(hash) library(igraph) library(umap) library(Rts...
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# performed the task with groups help library(raster) library(rasterVis) library(rgdal) library(ggmap) library(tidyverse) library(knitr) # used groups help for performing the task # New Packages library(ncdf4) # to import data from netcdf format # Land use Land cover # Create afolder to hold the downloaded dat...
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readfiles <- function(directory, id){ filenames <- paste(directory, "/", formatC(id, width=3, flag="0"), ".csv", sep="") specdata <- list(length = length(filenames)) for (i in seq_along(filenames)){ specdata[[i]] <- read.csv(filenames[i]) } specdata } complete <- function(directory,id=1:332){ specda...
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set.seed(1) library(geoR) fields <- grf(100, cov.pars = c(1, 1), nugget = 0.1, cov.model = "exponential", kappa = 0.5, messages = FALSE) geoR_fit = likfit(fields, trend = "1st", ini.cov.pars = c(1, 1), nugget = 0.1, lik.method = "ML") cmod1 = cmod.std("exponential", psill = 1, r = 1, ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tree_rearrangement.R \name{RearrangeEdges} \alias{RearrangeEdges} \title{Rearrange edges of a phylogenetic tree} \usage{ RearrangeEdges( parent, child, dataset, TreeScorer = MorphyLength, EdgeSwapper, scoreToBeat = Tre...
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## makeCacheMatrix and cacheSolve cache the value of the inverse matrix so that when needed, the inverse ## matrix can be looked up in the cahce rather than recomputed, saving time. ## makeCacheMatrix returns a list containing functions to: ## set value of matrix ## get value of matrix ## set value of inverse ## get v...
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# Aggregate/count outbreak signals pr system, pr year results<-fullDataSVM[,.( numS=sum(s_status!="Normal"), numM=sum(msis_outbreak==T), numV=sum(vesuv_outbreak==1) ),by=.(year)] results openxlsx::write.xlsx(results,file=file.path(SHARED_FOLDER_TODAY,"signaler.xlsx")) ## Graph signals total ###### toPlot <...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/logistic_regression_multiclasses.R \name{logistic_regression_multiclasses} \alias{logistic_regression_multiclasses} \title{logistic_regression_multiclasses} \usage{ logistic_regression_multiclasses(X, Y, mu_fun, maxit = 1e+05, tol = 1e-05) } ...
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% Generated by roxygen2 (4.0.0): do not edit by hand \name{df_list2csv} \alias{df_list2csv} \title{Save a list of data.frames as seperate csv's} \usage{ df_list2csv(df_list, filename, digits = nchar(as.character(length(df_list)))) } \arguments{ \item{df_list}{A list of data.frame objects} \item{filename}{The base file...
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# author - Taiyun Kim options(shiny.maxRequestSize=5*1024^3) Sys.setlocale("LC_ALL","C") library(progress) library(htmlwidgets) library(colourpicker) library(shinyTime) library(rhandsontable) library(D3TableFilter) library(DT) library(glmnet) # source the necessary functions source("./functions/summariseFile.R") sour...
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#' Prints "Hello, world!" #' @title Some text #' @description Some other text #' #' #' @param x The name of the person to say hi to #' @return The output from \code{\link{print}} #' @examples #' hello('Foo') #' \dontrun{hello('Bar') #' } #' @export hello <- function(x){ print(paste0("Hello,",x ,", this is the world!...
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## File Name: tam_linking_extract_list.R ## File Version: 0.05 tam_linking_extract_list <- function( input, entries, names=NULL ) { if ( is.null(names) ){ names <- entries } NE <- length(entries) output <- list() for (ee in 1:NE){ output[[ names[ee] ]] <- input[[ entries[ee] ]] ...
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#load libraries library(tidyverse) library(here) library(janitor) library(corrr) library(moderndive) library(purrr) library(webchem) #rm(list=ls()) #read current release information to set parameters for download source(here::here("code", "current_release.R")) time_begin_data <- Sys.time() #These are log-fold chan...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/causal_graphs.R \name{make_data_for_figure_4_1} \alias{make_data_for_figure_4_1} \title{Simulate data that corresponds to Figure 4.1 from MgW} \usage{ make_data_for_figure_4_1(n, seed = sample.int(.Machine$integer.max, 1)) } \arguments{ \item...
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pullDataWeeklySB.R
library(plyr) library(RSQLite) library(sendmailR) drv <- dbDriver("SQLite") con <- dbConnect(drv, "/home/ec2-user/sports2015/NBA/sports.db") tables <- dbListTables(con) lDataFrames <- vector("list", length=length(tables)) ## create a data.frame for each table for (i in seq(along=tables)) { if(tables[[i]] == 'NBAH...
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multiple_linear_regressionTest.R
# Multileaner regression dataset = read.csv('50_Startups.csv') # Encoding categorical data dataset$State = factor(dataset$State, levels = c('New York', 'California', 'Florida'), labels = c(1, 2, 3)) #Spliting data in to training and test set # install package...
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rct_data_raw<-readRDS(file="M:\\Projects\\2018\\Project.RCTSubGroup\\Output\\1.StatMed\\R2\\Code&DataForReview\\macro_data.RDS") n<-dim(rct_data_raw)[1] time<-1.1-rexp(n,10) time[which(time>1)]<-1 time[which(time<0.5)]<-0.5 rct_data_raw[,'time']<-time rct_data_raw[,'tte']<-NA for(i in 1:n) { message(i) n_exac<...
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Admission Prediction Model.R
library(mlbench) library(caret) library(ModelMetrics) #load in data, change admit to factor mydata <- read.csv("https://stats.idre.ucla.edu/stat/data/binary.csv") mydata$admit <- as.factor(mydata$admit) #fit logistic regression model admit.model <- glm(admit ~ gre + gpa + rank, family = binomial(link = "logi...
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PatternCausality.R
patternCausality <- function(X,Y,E,tau,metric,h,weighted) { ################################### ### STEP 0: PREPARATORY ACTIONS ### ################################### NNSPAN = E+1 # Former NN | Reserves a minimum number of nearest neighbors CCSPAN = (E-1)*tau # This will remove the common coordinate NNs ha...
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simGwexModel.Rd.R
library(GWEX) ### Name: simGwexModel ### Title: simGwexModel ### Aliases: simGwexModel ### ** Examples # vector of dates vecDates = seq(from=as.Date("01/01/2005",format="%d/%m/%Y"), to=as.Date("31/12/2014",format="%d/%m/%Y"),by='day') ############################################################### # ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rainette.R \name{order_docs} \alias{order_docs} \title{return documents indices ordered by CA first axis coordinates} \usage{ order_docs(m) } \arguments{ \item{m}{dtm on which to compute the CA and order documents, converted to an integer mat...
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cachematrix.R
## Put comments here that give an overall description of what your ## functions do ## makeCacheMatrix - caches the inverse of a matrix ## get - returns the matrix ## set - sets env var x (i.e. the matrix) ## setInverse - sets env variable inv (i.e. the inverse) ## getInverse - returns contents of var inv ## ## cacheSol...
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2. SVM.R
### SVM model testing ### Data cc = read.csv("./data/creditcard.csv") mtsvr = mtcars[order(mtcars$mpg),] mtsvr_factor = mtsvr mtsvr_factor[,c("vs", "am", "cyl", "gear", "carb")] = lapply(mtsvr_factor[,c("vs", "am", "cyl", "gear", "carb")], as.factor) mtsvr_norm = data.frame(scale(mtsvr)) library(e1071) ### Fit mode...
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2_sampling.R
samplingTrainTestValid <- function() { set.seed(1234) load(file.path(dataPath, "dataToTranTestValid_cleaned.RData")) dataToTranTestValid_cleaned$group <- sample(c("train", "test", "valid"), size = nrow(dataToTranTestValid_cleaned), ...
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test-ops.R
context("ops") detach("package:errors", unload = TRUE) library(errors) test_that("bolean ops throw a warning once", { xval <- 1 x <- set_errors(xval, 1) expect_warning(expect_equal(!x, !xval)) expect_silent(expect_equal(!x, !xval)) options(errors.warn.bool = TRUE) expect_warning(expect_equal(x & x, xval ...
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/ggparallel.R
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2020-04-19T11:57:34.353499
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ggparallel.R
library("triangle") set.seed(0) q1_d1 <- round(rtriangle(1000, 1, 7, 5)) q1_d2 <- round(rtriangle(1000, 1, 7, 6)) q1_d3 <- round(rtriangle(1000, 1, 7, 2)) df <- data.frame(q1_d1 = factor(q1_d1), q1_d2 = factor(q1_d2), q1_d3 = factor(q1_d3)) library(dplyr) # group by combinations ...
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MRCIEU/mrever
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get_instruments.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/query.r \name{get_instruments} \alias{get_instruments} \title{<brief desc>} \usage{ get_instruments(id, graph = options()$eveneo4jg) } \arguments{ \item{graph}{= options()$eveneo4jg <what param does>} \item{id=NULL}{<what param does>} } \val...
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app.R
library(shiny) library(shinydashboard) library(plotrix) library(rlist) library(xlsx) library(markdown) library(rmarkdown) library(grDevices) library(rgl) library(htmlwidgets) library(GenSA) library(shinyjs) library(ggplot2) library(plotly) library(Bessel) options(shiny.sanitize.errors = FALSE) source('air_parameters...
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Shakespeare_data.R
# Pick info sheet for Shakespeare & Cervantes my.authors <- c("Shakespeare, William (1564-1616)", "Cervantes Saavedra, Miguel De (1547-1616)") for (my.author in my.authors) { df <- df.preprocessed %>% dplyr::filter(author %in% my.author) %>% dplyr::select(estc_control_number = control_number, title, publica...
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7_plots.R
## ----eval=FALSE---------------------------------------------------------- plot(log(subs), log(citeprice), data = Journals) rug(log(Journals$subs)) rug(log(Journals$citeprice), side = 2) ## ----eval=FALSE---------------------------------------------------------- plot(log(citeprice) ~ log(subs), data = Journals, pch =...
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/run_analysis.R
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run_analysis.R
if (!getwd() == "./temp_temp") { dir.create("./temp_temp") } library(plyr) library(data.table) library(dplyr) temp <- tempfile() download.file("http://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip",temp) unzip(temp, list = TRUE) #This provides the list of variables and I choose th...
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eshilts/handysmurf
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lds.R
#' Easy Dubug Logging #' Streamlined debug logging using sprintf. Unfortunately, #' this function is dependent on the logging package and setting #' the log level to debug. #' #' @param \dots arguments for logging using \code{sprintf} #' @author Erik Shilts #' @note Part of a suite of Opower packages #' @export lds <-...
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ckenaley/trackter
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test-kin.R
context("kin functions") test_that("kin.simple works fine", { y <- EBImage::readImage(system.file("extdata/img", "sunfish_BCF.jpg", package = "trackter")) t <-tempdir() ti <-paste0(tempdir(),"/images") tp <- paste0(tempdir(),"/processed_images") dir.create(ti) dir.create(tp) EBImage::writeImage(y,pa...
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gaelleVF/PPBstats-PPBmelange
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2023-05-10T23:33:10.101992
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server.R
# PPBstats_interface # Agro server server <- function(input, output) { data("data_GxE") data_GxE = format_data_PPBstats(data_GxE, type = "data_agro") # Design experiment ---------- # out_design_experiment = reactive( # design_experiment( # expe.type = input$design_experiment_expe.type, # ...
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transitorio.R
# tt <- tktoplevel() # tkpack(quadroinicial <- tkframe(tt), fill = "both", expand = TRUE) # telainicial <- ttknotebook(quadroinicial) # ## # paned1 <- ttkpanedwindow(telainicial, orient = "horizontal", style = "Toolbar.TPanedwindow") # paned2 <- ttkpanedwindow(telainicial, orient = "horizontal", style = "Toolbar.TPaned...
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municipios_2014.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/document_data.R \docType{data} \name{municipios_2014} \alias{municipios_2014} \title{LINDES-2014 del IGN para los municipios (LAU2-SPAIN)} \format{ A sf-data frame con 8.201 filas y 7 variables \itemize{ \item INECodMuni: Codigo INE para el ...
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crime.R
#' Find street level crime within a specified distance or area #' #' Crimes at street-level; either within a 1 mile radius of a single point, or #' within a custom area. The street-level crimes returned in the API are #' only an approximation of where the actual crimes occurred, they are not #' the exact lo...
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Heatmaps.R
library(ggplot2) library(ggmap) climate_change <- read.csv("Climate_change.csv", stringsAsFactors = FALSE) #for loop to remove columns that aren't US. Or use dplyr, one of those R/SQL packages #13866 is the magic number #try subsetting by = "US" for(i in 1:nrow(climate_change)){ if(climate_change$countryCode[i] !...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/burr.R \name{burr_plt} \alias{burr_plt} \title{Burr coefficients after power-law transformation} \usage{ burr_plt(shape1 = 2, shape2 = 1, scale = 0.5, a = 1, b = 1, inv = FALSE) } \arguments{ \item{shape1, shape2, scale}{Shape1, shape2 and sc...
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exercise_milk.R
## ## Clear R rm(list=ls()) ## load some libraries library(rethinking) library(tidyverse) library(ggfortify) library(cowplot) ## load the dataset milk <- read_csv("https://github.com/opetchey/BIO144/raw/master/3_datasets/milk_rethinking.csv") ## look at the data and we see there are NAs in the neocortex.perc var...
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myfirstscript.R
#Thisis a comment 5+ #this is the famous five 209+ #I could note that this is the CCGs in 2016 211+ #while this is the number of CCGs in 2015 6 / 3 mean 3<4 "2017-09-04" as.Date("2017-09-04") "what?" 2^2 sqrt(-1) 1:5 pi pi^2 1/0 #floating point errors 0.2<0.2 0.2==0.2 (0.8-0.6)==(0.7-0.5) all.equal(0.8-...
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Stability.R
#' Estimate stability #' #' Takes the output of \code{\link{subsetDimReduction}} and finds #' the stable low-dimension components across dimensionality reduced #' subsets of the original data. #' @param dr [list] either output of \code{\link{subsetDimReduction}} or #' manually generated list with dimensionality reduct...
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anacom3.R
library(ggplot2) library(dplyr) library(FactoMineR) # pour MCA library(missMDA) library(cluster) # pour agnes library(RColorBrewer) library(fastcluster) library(NbClust) library(sp) library(raster) library(cowplot) setwd("../") { load(file="data/ICES/Tabfin1.Rdata") Tabfin1<- titi names(Tabfin1)[5]<- "Pred1" Tabfin...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rsyntax.r \name{tCorpus$fold_rsyntax} \alias{tCorpus$fold_rsyntax} \title{Fold rsyntax annotations} \arguments{ \item{annotation}{The name of an rsyntax annotation column} \item{by_label}{The labels in this column for which you want to aggre...
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jennysFlower.R
options(repr.plot.width = 4, repr.plot.height = 4) library("ggplot2") # Make a dandelion angle <- pi*(3-(sqrt(5))) points <- 500 t <- (1:points)*angle x <- sin(t) y <- cos(t) df <- data.frame(t, x, y) p <- ggplot(df, aes(x*t, y*t)) p + geom_point(aes(size=t), alpha = 0.5, color = "black", shape=8) + theme( plot....
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rbm_train.R
##' Training a RBM(restricted Boltzmann Machine) ##' ##' Training a RBM(restricted Boltzmann Machine) ##' @param x matrix of x values for examples ##' @param hidden number of hidden units ##' @param visible_type activation function of input unit.Only support "sigm" now ##' @param hidden_type activation function o...
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KasperEinarson/Faroe-Islands
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main.R
rm(list = ls()) graphics.off() source("libs/initR.R") # initiating the R session source("libs/getData.R") # getting basic data files # --------------------------------------------------------------------------- # # Dataanalyse # source("libs/Analyse_vindhastighed.R") source("libs/Analyse_vindretning.R") s...
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Calculate Position In Race from Telemetry Segments.R
library(tidyverse) library(rvest) library(RMySQL) dbDisconnect(con) con <- dbConnect(MySQL(), host='localhost', dbname='cycling', user='jalnichols', password='braves') # # Bring in Strava Activities # all_race_activities <- dbGetQuery(con, "SELECT...
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2_amplitude_CIs.R
# 2_amplitude_CIs.R # make credible intervals for amplitude for hour of day analysis # October 2019 # get the chain estimates index = grep('^cosine.c|^sine.c', rownames(bugs.results$summary)) cnames = rownames(bugs.results$summary)[index] to.use1 = as.matrix(bugs.results$sims.array[,1,index]) # first chain to....