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# This file is generated by make.paws. Please do not edit here. #' @importFrom paws.common populate NULL create_cloud_front_origin_access_identity_input <- function (...) { args <- c(as.list(environment()), list(...)) shape <- structure(list(CloudFrontOriginAccessIdentityConfig = structure(list(CallerReferen...
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#=============================================================================== # author: Benedicte Rhone # date: 03/2016 #------------------------------------------------------------------------------- # Description: GOterms enrichment analysis on a set of genomic region under # selection using the topGO R package ...
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#not found #source("~/repos/sim-spacemap/linmech/space_score_functions_10082011.txt") ##space.shd, and space.shd.adj load("dense_p500_adj_matrix.Rdata") true.v=vstructures(true.dir) ############################# part II: generate Guassin linear mechanism based on pancr.adj p=nrow(true.dir) n=100 nrep=10 source("~/re...
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###### 16_KAO_merging_CD3.1_results_with_Lipidex_output.R ####### ## To help identifiy some of the unknown features we searched raw files ## with extra nodes in Compound Discoverer 3.1: MZ Cloud, chemspider, ## mzvault, and formula. ## These results were further filtered down in excel to include only ## features (put...
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#!/usr/bin/env Rscript suppressPackageStartupMessages(library(RSienaTest)) suppressPackageStartupMessages(library(tcltk)) RSienaTest:::DONE(FALSE) while(!RSienaTest:::DONE()) {Sys.sleep(0.1)}
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/brood_check.R \name{brood_check} \alias{brood_check} \title{Perform quality checks on brood data} \usage{ brood_check( Brood_data, Individual_data, Capture_data, Location_data, approved_list, output, skip ) } \arguments{ \item{B...
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setwd("C:/Users/PC/Desktop/New folder1") Owls <- read.table('Owls.txt', header = TRUE,dec = ".") Owls #You should check all variables (column), it should available for analysing. names(Owls) str(Owls) #Our function: #Check how many station (tram khi tuong) in our dataset Allnests <- unique(Owls$Nest) N <- length(Alln...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/predict.R \name{predict.gp} \alias{predict.gp} \title{Predict} \usage{ \method{predict}{gp}(model, x, full = quicker(model, x)) } \arguments{ \item{model}{The gp object} \item{x}{The X data, as a matrix. Vectors will be interpreted as single...
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testlist <- list(G = numeric(0), Rn = numeric(0), atmp = numeric(0), ra = numeric(0), relh = c(-7.36599172844076e+192, 1.44942408802595e-285, -1.72131968218895e+83, -7.88781071482505e+93, 1.08231311223032e-105, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), rs = numeric(0), temp = c(8.5728629954997e-312, 1.56898...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/local_interactions.R \name{local_interactions} \alias{local_interactions} \alias{local_interactions.explainer} \alias{local_interactions.default} \title{Model Agnostic Sequential Variable Attributions with Interactions} \usage{ local_interact...
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## makeCacheMatrix creates an object that allows to cache data about the matrix ## cacheSolve solve the inverse of a makeCacheMatrix object ## it tries to find a cached inverse, if it can't it solves the inverse and cache it ## returns a list of functions to get or set the matrix ## and to get or set the Inverse of th...
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#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # # Utility script for all US and CA Census layers # # By: mike gaunt, michael.gaunt@wsp.com # # README: this script gets us census data #-------- it uses tidycensus, cancensus, and tigris packages #-------- it is not robust enough to f...
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#' @title Leslie matrix #' #' @description #' Creates a Leslie Matrix from a \code{FLBRP} object that represents a population at equilibrium #' #' @param object \code{FLBRP} #' @param fbar \code{numeric} F at whicj survival calculated #' @param numbers \code{boolean} numbers or biomass, numbers bt default #' @param ...
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#' Setup #' #' Specifies API Key and the base URL for session #' #' @param api_key Your Coinmarketcap API key. #' @param sandbox Sets the base URL for the API. If set to TRUE, the sandbox-API #' is called. The default is FALSE. #' #' @examples #' setup("xXXXXxxxXXXxx") #' get_setup() #' #' @export #' @name setup setu...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/srs.R \name{srsworJointInclusionProbabilityMatrix} \alias{srsworJointInclusionProbabilityMatrix} \title{SRS joint inclusion probability} \usage{ srsworJointInclusionProbabilityMatrix(n, N) } \arguments{ \item{n}{sample size} \item{N}{populat...
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\name{get.edges} \alias{get.edges} \title{Get Edges} \description{ List the edges in an RHugin domain. } \usage{ get.edges(domain) } \arguments{ \item{domain}{an RHugin domain.} } \value{ a list with one element for each node in \sQuote{domain}. Each element is in turn a list with a single element \sQuote{edges...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/swathDataUtils.R \name{dimnames.msexperiment} \alias{dimnames.msexperiment} \title{show colnames (it does'nt let you set the columns)} \usage{ \method{dimnames}{msexperiment}(x) } \arguments{ \item{x}{msexperiment} } \description{ show colnam...
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## GENERATE AN ALTERNATE VERSION OF FIG. 4A USING AGES 2-7 TO DEFINE CHILDREN ## SEE "ANTIGENIC_ADVANCE.R" FOR MAIN TEXT ANALYSES. ## Clear memory rm(list = ls()) #setwd('2017_AZ/') library(lubridate) library(ggplot2) library(ggpubr) library(reshape2) library(gridExtra) setwd('~/Dropbox/R/2018_seasonal_flu/Antigenic...
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# # WhoWillLeaveCompany.R, 13 Feb 19 # Data from: # Who will leave the company?: {A} large-scale industry study of developer turnover by mining monthly work report # Lingfeng Bao and Zhenchang Xing and Xin Xia and David Lo and Shanping Li # # Example from: # Evidence-based Software Engineering: based on the publicly av...
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library(leaflet) map <- leaflet() %>% addTiles() map <- map %>% addMarkers(lat=55.45, lng=37.37, popup="The Kremlin and Red Square , Moscow" ) map
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context("install()") test_that("Arguments are validated", { expect_error( install("foo", "bar"), "all '...' arguments to 'install\\(\\)' must be named" ) expect_error(install(TRUE), "is.character\\(pkgs\\) is not TRUE") expect_error(install(ask="foo"), "is.logical\\(ask\\) is not TRUE")...
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## CDS.R test case library(CDS) ## truth1 <- CDS(TDate = "2014-01-14", ## maturity = "5Y", ## parSpread = 32, ## couponRate = 100, ## recoveryRate = 0.4, ## isPriceClean = FALSE, ## notional = 1e7) ## save(truth1, file = "CDS.test.RD...
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# Process_NAM_data_step5.R - take 24-hr summaries of NAM weather data #### Clear variables and sinks; define working directory #### rm(list = ls()) # clear all variables options(warn = 2) # throw an error when there's a warning and stop the code from running further if (max(dev.cur())>1) { # make sure it isn't out...
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######################################################################################################################## ########## This scripts performs KED merging with singularity analysis ######## ##############################################################################...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/currency-pair-class.R \name{CurrencyPair} \alias{CurrencyPair} \title{CurrencyPair class} \usage{ CurrencyPair(base_ccy, quote_ccy, calendar = NULL) } \arguments{ \item{base_ccy}{a \link[=Currency]{Currency} object} \item{quote_ccy}{a \link[...
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# Load Libraries library(shiny) library(tidyverse) #dplyr and ggplot would suffice # Define server logic required to draw a histogram shinyServer(function(input, output) { # Only flip the coins when the "Let if flip!" button is pressed big_sample <- eventReactive(input$run, { # ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/htmlTable_helpers_prepareCss.R \name{prPrepareCss} \alias{prPrepareCss} \title{Prepares the cell style} \usage{ prPrepareCss( x, css, rnames, header = NULL, name = deparse(substitute(css)), style_list = NULL ) } \arguments{ \item{...
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## UI for the DBSCAN Plume Shiny App ui <- fluidPage( titlePanel("DBSCAN Plume Detection Tool"), ## Upload file button sidebarLayout( sidebarPanel( fileInput("upload", "Upload Data File"), ## Choose epsilon value numericInput("f_val","f value for MinPts estimate", v...
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\name{mlVAR0} \alias{mlVAR0} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Multilevel VAR Estimation for Multiple Time Series } \description{ The function \code{mlVAR0} computes estimates of the multivariate vector autoregression model as introduced by Bringmann et al. (2013) which can be exten...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/plots.R \name{evolution_plot} \alias{evolution_plot} \title{Evolution plot} \usage{ evolution_plot(QC_out, Sample_names = NULL) } \arguments{ \item{QC_out}{: Output from One_step_clustering} \item{Sample_names}{: character vector of the name...
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#' @title WIOD 2006 Data #' #' @description WIOD 2006 dataset #' @name wiot2006 #' @docType data #' @usage wiot2006 #' @keywords datasets NULL
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#load library dplyr library(dplyr) #create working directory setwd("E:/rasna/D drive/Datascience/GettingAndCleaningData/WorkingDir") #Section 1 - Merge the training and the testing data sets # read rain file data and test file data into data frame train.dataset <- read.table("./X_train.txt") test.dataset <- read.tabl...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{power5} \alias{power5} \title{Subset of FBS in Power Five conferences} \format{An object of class \code{data.frame} with 910 rows and 43 columns.} \usage{ power5 } \description{ Subset of FBS in Power Five conferen...
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\name{buildAnnotationStore} \alias{buildAnnotationStore} \title{Build a local annotation database for recoup} \usage{ buildAnnotationStore(organisms, sources, home = file.path(path.expand("~"), ".recoup"), forceDownload = TRUE, rc = NULL) } \arguments{ \item{organisms}{a character vector of organisms ...
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#!/usr/local/bin/Rscript library(rJava) library(Rserve) library(RHive) rhive.init(); rhive.connect(); d <- rhive.query('select * from ia') #rhive.query('load data inpath \'input/data.txt\' overwrite into table gener ') dataframe <-d; tableinformation<-rhive.query('show tables '); tableinformation class(dataframe); sum...
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#' Sample texts from a predefined text source #' #' Performs text sampling. Requires input data in the form of raw texts. #' #' @param n Number of texts to be sampled. \code{n} is an integer greater than 0. By default, \code{n} is set to 1. #' @param source Text source. A vector of characters, a \code{data.frame}, or a...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/YeoJohnson.R, R/misc.R, R/printing.R \name{yj_transform} \alias{yj_transform} \alias{estimate_yj} \alias{ellipse_check} \alias{printer} \alias{prepare} \alias{is_trained} \alias{sel2char} \alias{print_step} \title{Internal Functions} \usage{ ...
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#' Process assignment for courseworks #' #' For a single assignment, process the google spreadsheet to submit assignment grades to courseworks #' #' @param path character; path to file containing all grades #' @param assignment character; homework to process (e.g. "hw1") #' #' @import tidyverse #' @importFrom janitor c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/qsub_sing_envs.R \name{qsub_sing_envs} \alias{qsub_sing_envs} \title{Adds environmental variables to a qsub string} \usage{ qsub_sing_envs(qsub_stub, envs, image) } \arguments{ \item{qsub_stub}{A string containing the initial qsub string to w...
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##FUNCTION TSNE #loading library library(Rtsne) #tSNE function for individual series tSNE <- function(expression_results, perplexity_wanted=5){ transpose = t(expression_results) tsne_results <- Rtsne(transpose, perplexity = perplexity_wanted , check_duplicates = FALSE) }
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#' Print a short message of praise to the user #' #' @description Takes a string as input and returns a short message of praise using the string. #' #' @param praisefor The verb or subject to praise the user for, entered as a string. If blank, a generic praise message will be returned. #' #' @return A short praise mess...
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## ----setup------------------------------------------------------------------------------------------------------------------------- #set working directory path_to_code<-rstudioapi::getActiveDocumentContext()$path main_directory<-strsplit(path_to_code,"/[a-zA-Z0-9_-]*.R$")[[1]] setwd(main_directory) #Set time variable...
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## These pair functions provide the functionality of computing the ## inverse of a matrix while using caching to improve performance and ## reduce computations. ## ## The functions assumes that the matrix supplied is a ## square invertiable matrix. ## ## MakeCacheMatrix - This function creates an object of...
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/edf_api.R \name{edf.all} \alias{edf.all} \title{Load all data from EDF file} \usage{ edf.all(EDFfile, samples = FALSE, eventmask = FALSE) } \arguments{ \item{EDFfile}{path to an EDF file} \item{samples}{logical indicating whether to ...
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##[Sehra]=group ##showplots ##Layer=vector ##X=Field Layer library(ggplot2) #qplot(Layer[[X]]) plot(density(log10(Layer[[X]]). adjust=0.5))
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# 날짜 : 2021-06-29 # 이름 : 박재형 # 내용 : barplot 막대차트 - p140 # 기본 막대차트 count <- c(1, 2, 3, 4, 5) barplot(count) score <- c(50, 25, 32, 21, 66) names(score) <- c("김유신", "홍길동", "강감찬", "장보고", "김춘추") barplot(score) # 범주형 막대차트 season <- c("winter", "summer", "spring", "summer", "summer", "autumn", "summer", "autumn", "spring...
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#tar_prior: list with distr and input as elements bayesian_tvar <- function(data, P, tar_variable, max_d, tar_prior, tar_scale, tar_transform = NULL, reps = 10000, burn = reps / 2, stability = T, max_attempts = 1e4, deltas = NULL, lambda = 0.1, tau = 10 * lambda, e...
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# source("http://bioconductor.org/biocLite.R") # biocLite("monocle") library(monocle) load(file="~/desktop/PLX_Rdata/Data_RunTSNE.Rdata") head(experiment.aggregate@meta.data) # add cluster_id into meta.data cluster_id <- experiment.aggregate@ident experiment.aggregate <- AddMetaData( object = experiment.aggregat...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read_vcf.R \name{read_vcf} \alias{read_vcf} \title{Read vcf files into list of CollapsedVCF objects} \usage{ read_vcf(vcf_files, sample_names, genome = "-") } \arguments{ \item{vcf_files}{Character vector of vcf file names} \item{sample_name...
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# file: product_store_gen.r # author: Dylan R. Wagner # Desc: # Generates product store relation data for use in # the database. # library(data.table) MAX_PRICE <- 50 MAX_INV <- 1000 # Read in the source store data stores_data <- fread("../data/stores.csv")[, "Store_ID"] items_source <- c("../data/items...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/offTargetAnalysis.R \name{offTargetAnalysis} \alias{offTargetAnalysis} \title{Design target-specific guide RNAs for CRISPR-Cas9 system in one function} \usage{ offTargetAnalysis( inputFilePath, format = "fasta", header = FALSE, gRNAou...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rand_forest_partykit.R \name{details_rand_forest_partykit} \alias{details_rand_forest_partykit} \title{Random forests via partykit} \description{ \code{\link[partykit:cforest]{partykit::cforest()}} fits a model that creates a large number of ...
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# Scrape car thefts per Landkreis theft_url <- "https://www.bka.de/SharedDocs/Downloads/DE/Publikationen/PolizeilicheKriminalstatistik/2018/BKATabellen/FaelleLaenderKreiseStaedte/BKA-LKS-F-04-T01-Kreise-Fallentwicklung_csv.csv" curl::curl_download(theft_url, "data/other_data/theft.csv") # Files have been manually clean...
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library(tidyverse) dir_proj <- fs::path('08-2020_nba_playoffs_excitement_index') dir_data <- fs::path(dir_proj, 'data') fs::dir_create(dir_data) path_export <- fs::path(dir_data, 'nba_playoffs_excitement_index_2.rds') path_gif <- fs::path(dir_proj, '2020_nba_playoffs_excitement_index_20201010.gif') n_sec <- 20 fps <...
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##' .. content for \description{} (no empty lines) .. ##' ##' .. content for \details{} .. ##' ##' @title ##' @param nhanes ##' @param miss_perc make_analysis_data <- function(nhanes) { data_analysis <- nhanes[c("pop_one", "pop_two")] %>% map( ~ mutate(.x, ldl_to_impute = chol_ldl_mgdl_sampson) %>% ...
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############################################################## ## ## Functions script for aquaculture-fisheries model ## ############################################################## # r = 1.5 # p = 850 # c = 20 # q = 0.0001 # Kmax = 1000 # phi = 0.5 # A = 300 # delta = 0.05 biomassGrowth <- function(r, B, K) { b_...
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library(dplyr) # use dplyr::first and dplyr::last library(ggplot2) library(xts) # use xts::first and xts::last library(tidyr) library(lubridate) library(tibble) library(tidyquant) source("./functions/funcs_for_new_normal.R") load("./produced_data/WEOApr2017_cepal_and_others") subject_dict_co <- WEOApr2017cepal18_othe...
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library(shinyWidgets) library(shinydashboard) library(data.table) library(plotly) library(dplyr) source("load_data.R") # https://stackoverflow.com/questions/34093169/horizontal-vertical-line-in-plotly vline <- function(x = 0, color = "red") { list( type = "line", y0 = 0, y1 = 1, yref = "paper", ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cli.R \name{cli_li} \alias{cli_li} \title{CLI list item(s)} \usage{ cli_li( items = NULL, labels = names(items), id = NULL, class = NULL, .auto_close = TRUE, .envir = parent.frame() ) } \arguments{ \item{items}{Character vector of...
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/D1Node.R, R/MNode.R \docType{methods} \name{listObjects,D1Node-method} \alias{MNode,D1Node-method} \alias{MNode,character-method} \alias{MNode-class} \alias{archive,MNode,character-method} \alias{create,MNode,character-method} \alias{...
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## Plotting ## # timeline with the number of followers ggplot(twitter_friends) + theme_bw() + geom_line(aes(date, followers), stat = 'identity', color = "#F2645A", size = 1.3) + geom_area(aes(date, followers), stat = 'identity', fill = "#F2645A", alpha = .3) + geom_bar(aes(date, new_followers), stat = 'identity',...
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#' Cleanup #' #' Removes the first two rows of the data frame df. Qualtrics data has two extra rows at the top that can mess up data manipulation. #' #'@param df A data frame from qualtrics. #' #'@return A data frame #'@export cleanup <- function(df) { # this just gets rids of the extra rows qualtrics adds df <...
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#' Get the overall costs/weight of a subgraph given its edgelist. #' #' @template arg_mcGP #' @template arg_edgelist #' @return [\code{numeric(2)}] Weight vector. #' @examples #' # generate a random bi-objective graph #' g = genRandomMCGP(5) #' #' # generate a random Pruefer code, i.e., a random spanning tree of g #' p...
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`Get1G` <- function(phi,n){ p<-length(phi) x0<-sum(c(1,-phi))^2 x<-x0-rowSums(GetB(phi))-GetKappa(phi) c(x,rep(x0,n-2*p),rev(x)) }
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\name{cv.glmnet} \alias{cv.glmnet} \title{Cross-validation for glmnet} \description{Does k-fold cross-validation for glmnet, produces a plot, and returns a value for \code{lambda}} \usage{ cv.glmnet(x, y, weights, offset, lambda, type.measure, nfolds, foldid, grouped, keep, parallel, ...) } \arguments{ \item{...
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# pm25_plot3.R # This will create a plot that shows what type of source of emissions of PM2.5 decreased in # Baltimore from 1999 to 2008 # Read in the source datasets library(ggplot2) library(plyr) NEI <- readRDS("summarySCC_PM25.rds") SCC <- readRDS("Source_Classification_Code.rds") #Subset the data for Baltimore ...
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# this library provides the means to generate random p-dimensional Gaussian library(MASS) # this is a function to create an episode # arguments are # # ep.length - length of episode # mn.vec - men vector of Gaussian # cov.mat - covariance matrix of Gaussian # cut.ponts - boundaries to partition variables create.epi...
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## literature metadata library(tidyverse) lit <- read.csv("meta_lit.csv") ## downloaded per search down <- lit %>% group_by(Search) %>% summarize (num_cite = n_distinct(Title), download = n()) ## extracted data per search ext <- lit %>% filter(Data.Extracted == "yes") %>% group_by(Search) %>% summar...
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# Thom Covert, April 2019 # example use of grf to possibly classify our name pairs better #=========== # standard setup #=========== root <- getwd() while(basename(root) != "name_matching") { root <- dirname(root) } source(file.path(root, "data.R")) # TC's random forest utilities source(file.path(root, "code", "fun...
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# diretories: RMSP(with 38 746 files), Saida_Pluv(with 108 files) at workdir one # Files at workdir diretory: # cloud_script.R; navegacao_rmsp.dat; coordenadas_pluv_saisp2.dat library(knitr); library(rmarkdown);library(tidyverse) library(gridExtra); library(corrplot); library(magrittr) library(lubridate); library(para...
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# simulate datasets for additional conditions # (no deposit, burst deposit, low morphological clock rate & relaxed morphological clock) run_simulation_extended = function(save.folder) { library(FossilSim) library(phyclust) #### Fixed args for all simulations args = list( # Output parameters ntrees =...
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\name{unifrac} \alias{unifrac} \title{ Unweighted UniFrac distance between communities } \description{ Calculates unweighted UniFrac, a phylogenetic beta diversity metric of the the unique (non-shared) fraction of total phylogenetic diversity (branch-length) between two communities. } \usage{ unifrac(comm, tree) }...
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extract_sentences <- function(doc){ sent_ann <- Maxent_Sent_Token_Annotator() doc_ann <- annotate(doc, sent_ann) doc[doc_ann] } process_file <- function(doc){ sentences <- readChar(doc, file.info(doc)$size) %>% as.String() %>% extract_sentences() %>% ...
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library(readr) votes <- read_csv("~/ML Toolbox/R Scripts/caret/rfe/house-votes-84.csv") View(votes) house_votes_84[rev_house_votes_84 == '?'] <- NA is.na(votes) cleaned_votes <- na.omit(house_votes_84) View(cleaned_votes) #load library and set seed library(caret) set.seed(998) # define an 75%/25% train/test split of ...
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## Univariate Cox Template ## This program generates univariate Cox models for multiple variables and outputs the results for further analyses ## It is designed as a compromise between genericity and flexibility # 0. Preparations # Loading necessary packages library(survival) library(MASS) library(ggplot2) ...
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#' Combines the full functionality to take the raw inputs and produce data.frame of extracted weather data and dates. #' #' @param rawRasterData list of raw raster data from Arc2 weather site #' @param gpsFile GPS file, probably from data warehouse, of GPS points for which we want to extract weather values #' @param la...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/filter_bmdk.R \name{filter_bmdk} \alias{filter_bmdk} \title{Runs the BMDK features data through a series of filtering methods} \usage{ filter_bmdk(dat) } \arguments{ \item{dat}{a list containing 3 elements: case, a list of case/control status...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/load_observations.R \name{load_observations} \alias{load_observations} \title{Load AVIRIS observations into a list} \usage{ load_observations( sites, aviris_specfile = here::here("aviris/aviris.rds"), use_waves = seq(400, 1300, by = 10)...
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train_model_correction <- function(model, df, pred, type) { if ("makemodel" %in% type) { model <- train_make_model_correction( model = model, df = df, pred = pred ) } if ("city" %in% type) { model <- train_city_correction( model = model, df...
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# Load the readr package library(readr) # Import potatoes.csv with read_csv(): potatoes potatoes <- read_csv("potatoes.csv")
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# takes the list of frequency matrices <results> and flattens them for # histogram plotting gatherFMValues <- function(results,k=10){ values = c() for (i in 1:length(results)){ fm <- results[[i]] values <- c(values,as.numeric(fm[lower.tri(fm, diag=FALSE)])) } tbl <- data.frame(values=values) tbl$lab...
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## This function will cache the inverse of a matrix ## When trying to invert a matrix it will first check to see if thee is a cached verison ## if there is it will use it ## Creates the matrix in cache makeCacheMatrix <- function(x = matrix()) {##defines the function inv<- NULL set<- function(y){ x<<-...
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#Pre-requisite : create_data.R has been executed => project-data.csv exists in RWork directory #Getting & parsing data read.csv("project-data.csv",header=TRUE, stringsAsFactors = FALSE)->pdata as.Date(pdata$Date)->pdata$Date strptime(pdata$Time, format="%Y-%m-%d %H:%M:%S")->pdata$Time #Creating 1st plot hist(pdata$Gl...
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# Munge student and mailer data student_addr<-stus %>% select(first=first_name, last=last_name, grade=grade_level, address=street, lat=lat.x, long=lon.x ) %>% mutate(type="KIPPster", cohort=NA) mailer_addr_selected<-mailer_addr %>% select(first, ...
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#' Get parameters and codes for risk data from TBB #' #' @return A tibble #' #' @examples #' #' \dontrun{ #' dt <- categories_risk() #' } #' #' @export #' categories_risk <- function() { categories <- httr::POST("https://verisistemi.tbb.org.tr/api/router", body = '{"filters":[],"route":"kkbKategorilerAll"}', ...
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## This R.programm contains two main-functions and does two things: ## makeCacheMatrix: This function creates a special "matrix" object that can cache its inverse ## and cacheSolve: This function computes the inverse of the special "matrix" ## returned by makeCacheMatrix above. If the inverse has already been calcula...
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setwd("Z:/eBay/Item Delivery tpNPS/US/Coder/Allocation/12_Dec'17") library(xlsx) mydata <- read.xlsx("duplicate_removal_file.xlsx",sheetName="Sheet1") library(foreign) write.foreign(mydata, "Z:/eBay/Item Delivery tpNPS/US/Coder/Allocation/12_Dec'17/us_dec17.txt", "Z:/eBay/Item Delivery...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/package.R \docType{package} \name{GenomicDistributions} \alias{GenomicDistributions} \alias{GenomicDistributions-package} \title{Produces summaries and plots of features distributed across genomes} \description{ If you have a set of genomic r...
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ce <- read.csv("lmeCE_Trait_Files/ceMT_Traits.csv") Int <- as.data.frame(list(Var="Int", CSQ1=cor(ce$Intercept, ce$CSQ_1, use="complete.obs"), CSQ2=cor(ce$Intercept, ce$CSQ_2, use="complete.obs"), PHQAnx=cor(ce$Intercept, ce$PHQ12_Anx, use="complete.obs"), ...
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library(dplyr) d <- read.csv("household_power_consumption.txt", sep=";", stringsAsFactors=FALSE) d <- mutate(tbl_df(d[d$Date == "1/2/2007" | d$Date == "2/2/2007", ]), Global_active_power_num = as.numeric(Global_active_power)) png("Plot1.png") # Plot 1 hist(d$Global_active_power_num, main="Global Active Power...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/si_themes.R \name{si_style_nolines} \alias{si_style_nolines} \title{SI style plot with blank canvass} \usage{ si_style_nolines(...) } \arguments{ \item{...}{inherits parameters from \code{\link[=si_style]{si_style()}}} } \description{ Incorpo...
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#Create a vector called x and place values 10 to 1000. x<-10:1000 # creates x vector as specified # Create a y vector that takes the square root of the log of numbers in x. y<-sqrt(log(x)) # creates y vector as specified #y<-log(x) #NOTE : The question asks to take sqrt of log values of x. However the Graph shown i...
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server <- function(input, output, session) { output$samplesize <- renderText({ size <- sample.size.mean(input$e, input$S, N = Inf, level = 0.95) paste0('Assuming N=Inf the Sample Size needed is: ', size$n) }) } shinyApp(ui, server)
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#' Find paths on server of resources defined by urls #' #' Does not attempt to parse queries etc #' @param url Character vector of one or more urls #' @return character vector of paths #' @author jefferis #' @export #' @seealso \code{\link{parseURI}} #' @examples #' remotepath("http://cran.r-project.org/web/packages/s...
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#install.packages('caTools',dependencies = TRUE,repos="http://cran.rstudio.com/") #install.packages('moments',dependencies = TRUE,repos="http://cran.rstudio.com/") #install.packages('nortest',dependencies = TRUE,repos="http://cran.rstudio.com/") #install.packages('fitdistrplus',dependencies = TRUE,repos="http://cran.rs...
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nh fig global metanetwork.R
# Need some other packages for this ipak(c("gridExtra", "base2grob", "gplots")) # First metanetworks with and without introduced interactions ------------------ node.size <- 0.25 # Native metanetwork p1.labs <- as.data.frame(c("Americas", "Europe", "Africa", "Asia", "New Zealand", "Hawaii...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/betamle.r \name{betamle} \alias{betamle} \title{Title} \usage{ betamle(fmu, method = "BFGS", data, brange) } \arguments{ \item{fmu}{formula object} \item{method}{character string} \item{data}{dataset} \item{brange}{vector} } \description{ ...
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fileconv.R
p2n <- function(x) as.numeric(sub("%","", x))/100 err1 <- read.table("rakesh/error_rates/err_rates.delim", sep = " ", header = TRUE) View(err1) err1$TrainErr <- err1$TrainErr/100 err1$TestErr <- err1$TestErr/100 err_knn400 <- read.table("rakesh/error_rates/knn400.txt", header = FALSE) colnames(err_knn400) <- c("k", "...